Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13225

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,828,924	-				+0.7
2,828,934	+				+0.1
2,828,943	+				-1.0
2,829,058	-				-2.2
2,829,058	-				-0.2
2,829,063	+				+0.9
2,829,063	+				-0.7
2,829,063	+				-0.5
2,829,063	+				+0.0
2,829,063	+				+0.9
2,829,064	-				-0.7
2,829,064	-				+2.3
2,829,064	-				-0.4
2,829,064	-				-0.4
2,829,064	-				-0.1
2,829,064	-				+1.1
2,829,064	-				+0.0
2,829,068	+				-1.2
2,829,069	-				-1.2
2,829,103	+				+0.5
2,829,104	-				+0.1
2,829,104	-				-2.4
2,829,132	+				-0.4
2,829,158	-				-1.4
2,829,169	+				-0.7
2,829,169	+				-0.7
2,829,169	+				-0.4
2,829,170	-				+1.2
2,829,170	-				+0.2
2,829,170	-				+0.5
2,829,170	-				-0.3
2,829,170	-				-0.2
2,829,176	-				-0.7
2,829,184	+				-0.2
2,829,227	-				-2.2
2,829,232	+				-0.1
2,829,232	+				+1.3
2,829,233	-				+0.3
2,829,233	-				+1.9
2,829,239	+				-0.2
2,829,240	-				-0.7
2,829,240	-				+1.1
2,829,240	-				+0.1
2,829,240	-				+1.6
2,829,244	-				+0.4
2,829,244	-				-0.9
2,829,333	-				-0.2
2,829,393	+		DZA65_RS13220	0.13	+0.1
2,829,393	+		DZA65_RS13220	0.13	+0.1
2,829,393	+		DZA65_RS13220	0.13	-1.6
2,829,395	+		DZA65_RS13220	0.13	-0.0
2,829,395	+		DZA65_RS13220	0.13	-1.9
2,829,396	-		DZA65_RS13220	0.14	+0.1
2,829,396	-		DZA65_RS13220	0.14	-0.6
2,829,396	-		DZA65_RS13220	0.14	-0.3
2,829,413	+		DZA65_RS13220	0.20	-0.3
2,829,414	-		DZA65_RS13220	0.20	-2.9
2,829,414	-		DZA65_RS13220	0.20	-0.2
2,829,451	-		DZA65_RS13220	0.32	-0.3
2,829,471	+		DZA65_RS13220	0.39	+0.1
2,829,471	+		DZA65_RS13220	0.39	+1.7
2,829,472	-		DZA65_RS13220	0.39	-0.5
2,829,472	-		DZA65_RS13220	0.39	-0.3
2,829,472	-		DZA65_RS13220	0.39	+0.3
2,829,472	-		DZA65_RS13220	0.39	+1.6
2,829,472	-		DZA65_RS13220	0.39	-0.2
2,829,472	-		DZA65_RS13220	0.39	-0.3
2,829,472	-		DZA65_RS13220	0.39	+0.0
2,829,472	-		DZA65_RS13220	0.39	+0.2
2,829,473	+		DZA65_RS13220	0.40	-0.3
2,829,473	+		DZA65_RS13220	0.40	-1.2
2,829,473	+		DZA65_RS13220	0.40	+0.7
2,829,473	+		DZA65_RS13220	0.40	-0.8
2,829,474	-		DZA65_RS13220	0.40	-1.4
2,829,474	-		DZA65_RS13220	0.40	-1.0
2,829,474	-		DZA65_RS13220	0.40	+0.1
2,829,502	+		DZA65_RS13220	0.49	+0.2
2,829,502	+		DZA65_RS13220	0.49	-1.2
2,829,502	+		DZA65_RS13220	0.49	+1.4
2,829,536	+		DZA65_RS13220	0.61	-0.1
2,829,536	+		DZA65_RS13220	0.61	+1.2
2,829,537	-		DZA65_RS13220	0.61	+0.9
2,829,582	-		DZA65_RS13220	0.76	+0.8
2,829,608	-		DZA65_RS13220	0.85	-0.4
2,829,645	+				-0.3
2,829,651	+				-1.2
2,829,651	+				-0.4
2,829,652	-				+0.5
2,829,652	-				-1.0
2,829,652	-				+0.7
2,829,654	+				+0.1
2,829,655	-				+0.1
2,829,655	-				-0.9
2,829,655	-				+0.4
2,829,655	-				+0.3
2,829,655	-				-0.5
2,829,658	+				-1.3
2,829,666	-				-0.3
2,829,711	-				+0.7
2,829,766	+				-1.7
2,829,767	-				+1.1
2,829,767	-				+0.0
2,829,786	-				-1.1
2,829,869	+				-1.9
2,829,869	+				+1.7
2,829,869	+				+2.0
2,829,870	-				-1.2
2,829,870	-				+0.4
2,829,870	-				+1.1
2,829,870	-				+0.3
2,829,923	+				+1.4
2,829,923	+				+0.4
2,829,923	+				+0.1
2,829,924	-				-0.4
2,829,927	+				-0.7
2,829,943	+				-0.3
2,829,944	-				+0.8
2,829,944	-				+0.3
2,829,944	-				+0.3
2,829,945	+				+1.1
2,829,945	+				-1.9
2,829,946	-				+2.7
2,829,946	-				-0.4
2,829,963	+				-1.9
2,830,003	+		DZA65_RS13225	0.10	+0.4
2,830,142	+		DZA65_RS13225	0.28	-1.4
2,830,143	-		DZA65_RS13225	0.28	-1.0
2,830,187	+				+0.1
2,830,187	+		DZA65_RS13225	0.34	-2.0
2,830,188	-		DZA65_RS13225	0.34	-0.5
2,830,188	-		DZA65_RS13225	0.34	-0.9
2,830,188	-		DZA65_RS13225	0.34	+0.1
2,830,189	+		DZA65_RS13225	0.34	-2.9
2,830,189	+		DZA65_RS13225	0.34	+0.5
2,830,189	+		DZA65_RS13225	0.34	+0.7
2,830,189	+		DZA65_RS13225	0.34	+1.1
2,830,189	+		DZA65_RS13225	0.34	-1.0
2,830,189	+		DZA65_RS13225	0.34	+0.3
2,830,189	+		DZA65_RS13225	0.34	-1.9
2,830,189	+		DZA65_RS13225	0.34	+0.8
2,830,189	+		DZA65_RS13225	0.34	+0.5
2,830,189	+		DZA65_RS13225	0.34	+0.3
2,830,190	-		DZA65_RS13225	0.35	+0.4
2,830,190	-		DZA65_RS13225	0.35	+0.1
2,830,190	-		DZA65_RS13225	0.35	-1.1
2,830,190	-		DZA65_RS13225	0.35	+0.5
2,830,190	-		DZA65_RS13225	0.35	-1.2
2,830,190	-		DZA65_RS13225	0.35	+1.1
2,830,190	-		DZA65_RS13225	0.35	+0.2
2,830,364	+		DZA65_RS13225	0.57	-0.4
2,830,364	+		DZA65_RS13225	0.57	+0.3
2,830,409	+		DZA65_RS13225	0.63	-0.0
2,830,409	+		DZA65_RS13225	0.63	-0.0
2,830,409	+		DZA65_RS13225	0.63	-1.1
2,830,410	-		DZA65_RS13225	0.63	+0.6
2,830,410	-		DZA65_RS13225	0.63	-0.1
2,830,410	-		DZA65_RS13225	0.63	-1.0
2,830,410	-		DZA65_RS13225	0.63	-1.9
2,830,425	-		DZA65_RS13225	0.65	-0.1
2,830,425	-		DZA65_RS13225	0.65	+0.9
2,830,472	+		DZA65_RS13225	0.71	-0.2
2,830,473	-		DZA65_RS13225	0.71	+0.4
2,830,488	+		DZA65_RS13225	0.73	+2.4
2,830,489	-		DZA65_RS13225	0.73	+0.8
2,830,517	+		DZA65_RS13225	0.77	-0.4
2,830,518	-		DZA65_RS13225	0.77	+0.1
2,830,562	+		DZA65_RS13225	0.82	+1.1
2,830,563	-		DZA65_RS13225	0.83	-0.7
2,830,563	-		DZA65_RS13225	0.83	-1.9
2,830,586	+		DZA65_RS13225	0.86	+0.2
2,830,587	-				+1.6
2,830,602	-		DZA65_RS13225	0.88	+0.9
2,830,605	+		DZA65_RS13225	0.88	-0.2
2,830,605	+		DZA65_RS13225	0.88	+1.4
2,830,605	+		DZA65_RS13225	0.88	-1.0
2,830,605	+		DZA65_RS13225	0.88	+0.1
2,830,605	+		DZA65_RS13225	0.88	+0.5
2,830,605	+		DZA65_RS13225	0.88	+0.6
2,830,606	-		DZA65_RS13225	0.88	+0.6
2,830,606	-		DZA65_RS13225	0.88	-1.1
2,830,606	-		DZA65_RS13225	0.88	-0.2
2,830,671	+				+0.6
2,830,672	-				+0.1
2,830,682	+				+0.1
2,830,698	+				-1.3
2,830,698	+				+0.2
2,830,699	-				+1.0
2,830,699	-				+1.0
2,830,719	+				+0.2
2,830,719	+				-1.0
2,830,720	-				+1.0
2,830,720	-				+0.1
2,830,730	-				-0.7
2,830,732	+				+0.2
2,830,733	-				-0.5
2,830,733	-				-0.5
2,830,733	-				+1.1
2,830,756	-				-0.7
2,830,779	+				-0.2
2,830,814	-				+0.7
2,830,814	-				-0.6
2,830,869	-				-1.2
2,830,887	+				-0.4
2,830,887	+				+0.1
2,830,887	+				-2.0
2,830,888	-				+0.4
2,830,940	-				-1.3
2,831,022	-				-0.2
2,831,050	+				-1.7
2,831,054	+				+0.1
2,831,054	+				-0.7
2,831,074	-				+1.1
2,831,093	-		DZA65_RS13230	0.15	-0.5
2,831,132	-		DZA65_RS13230	0.43	+0.4
2,831,172	-		DZA65_RS13230	0.72	-1.9
2,831,216	-				+0.4
2,831,400	+		DZA65_RS13235	0.34	-0.6
2,831,401	-		DZA65_RS13235	0.34	-0.2
2,831,401	-		DZA65_RS13235	0.34	+0.0
2,831,401	-		DZA65_RS13235	0.34	-0.0
2,831,462	+		DZA65_RS13235	0.46	-0.1
2,831,463	-		DZA65_RS13235	0.46	+0.1
2,831,545	+		DZA65_RS13235	0.62	+0.1
2,831,546	-		DZA65_RS13235	0.62	+0.5
2,831,546	-		DZA65_RS13235	0.62	+0.9
2,831,546	-		DZA65_RS13235	0.62	+0.8
2,831,546	-		DZA65_RS13235	0.62	+0.1
2,831,587	+		DZA65_RS13235	0.70	+0.7
2,831,588	-		DZA65_RS13235	0.70	-0.3
2,831,643	-		DZA65_RS13235	0.81	+0.1
2,831,695	-				-0.2