Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11340

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,410,592	+		DZA65_RS11335	0.64	+0.3
2,410,592	+		DZA65_RS11335	0.64	-0.6
2,410,592	+		DZA65_RS11335	0.64	-0.5
2,410,594	+		DZA65_RS11335	0.64	+0.9
2,410,594	+		DZA65_RS11335	0.64	+0.2
2,410,595	-		DZA65_RS11335	0.64	+0.8
2,410,595	-		DZA65_RS11335	0.64	+0.7
2,410,599	+		DZA65_RS11335	0.64	+0.2
2,410,613	+		DZA65_RS11335	0.65	-0.4
2,410,614	-		DZA65_RS11335	0.65	-0.2
2,410,615	+		DZA65_RS11335	0.65	+0.5
2,410,615	+		DZA65_RS11335	0.65	-0.3
2,410,615	+		DZA65_RS11335	0.65	+0.7
2,410,615	+		DZA65_RS11335	0.65	-0.8
2,410,616	-		DZA65_RS11335	0.65	-1.2
2,410,616	-		DZA65_RS11335	0.65	-0.4
2,410,655	+		DZA65_RS11335	0.67	+0.6
2,410,779	+		DZA65_RS11335	0.73	-2.8
2,410,789	+		DZA65_RS11335	0.74	-2.0
2,410,789	+		DZA65_RS11335	0.74	-0.4
2,410,789	+		DZA65_RS11335	0.74	-0.2
2,410,789	+		DZA65_RS11335	0.74	-0.0
2,410,789	+		DZA65_RS11335	0.74	-0.3
2,410,790	-		DZA65_RS11335	0.74	-0.0
2,410,790	-		DZA65_RS11335	0.74	-0.4
2,410,790	-		DZA65_RS11335	0.74	+0.3
2,410,790	-		DZA65_RS11335	0.74	+1.4
2,410,790	-		DZA65_RS11335	0.74	-0.7
2,410,799	+		DZA65_RS11335	0.74	-0.0
2,410,799	+		DZA65_RS11335	0.74	+1.1
2,410,799	+		DZA65_RS11335	0.74	+0.2
2,410,800	-		DZA65_RS11335	0.74	+1.0
2,410,800	-		DZA65_RS11335	0.74	-0.8
2,410,800	-		DZA65_RS11335	0.74	-0.4
2,410,800	-		DZA65_RS11335	0.74	+0.4
2,410,800	-		DZA65_RS11335	0.74	+0.1
2,410,810	+		DZA65_RS11335	0.75	+0.3
2,410,811	-		DZA65_RS11335	0.75	-0.4
2,410,952	-		DZA65_RS11335	0.82	-0.2
2,410,952	-		DZA65_RS11335	0.82	-0.0
2,410,958	+				+1.3
2,410,993	+		DZA65_RS11335	0.84	+0.1
2,410,993	+		DZA65_RS11335	0.84	+0.6
2,410,993	+		DZA65_RS11335	0.84	+0.7
2,410,993	+		DZA65_RS11335	0.84	-0.3
2,411,031	+		DZA65_RS11335	0.86	-0.0
2,411,053	+		DZA65_RS11335	0.87	-2.6
2,411,053	+		DZA65_RS11335	0.87	-0.1
2,411,053	+		DZA65_RS11335	0.87	+0.3
2,411,082	-		DZA65_RS11335	0.89	-1.0
2,411,090	+		DZA65_RS11335	0.89	-0.0
2,411,090	+		DZA65_RS11335	0.89	+1.7
2,411,090	+		DZA65_RS11335	0.89	+0.7
2,411,090	+		DZA65_RS11335	0.89	-0.3
2,411,091	-		DZA65_RS11335	0.89	-0.3
2,411,091	-		DZA65_RS11335	0.89	+0.4
2,411,091	-		DZA65_RS11335	0.89	-0.7
2,411,091	-		DZA65_RS11335	0.89	-0.0
2,411,091	-		DZA65_RS11335	0.89	-0.0
2,411,091	-		DZA65_RS11335	0.89	+1.3
2,411,092	+		DZA65_RS11335	0.89	+0.5
2,411,093	-		DZA65_RS11335	0.89	-3.0
2,411,093	-		DZA65_RS11335	0.89	+1.0
2,411,093	-		DZA65_RS11335	0.89	+0.6
2,411,093	-		DZA65_RS11335	0.89	-0.6
2,411,154	-				-2.8
2,411,162	+				-0.3
2,411,167	+				+1.0
2,411,167	+				+0.1
2,411,167	+				+0.5
2,411,167	+				+1.2
2,411,167	+				+1.3
2,411,167	+				+1.0
2,411,167	+				-0.0
2,411,168	-				+1.0
2,411,168	-				-1.6
2,411,168	-				+1.6
2,411,168	-				-1.2
2,411,168	-				-1.6
2,411,168	-				+0.4
2,411,168	-				+0.6
2,411,168	-				+0.4
2,411,168	-				-0.6
2,411,251	+				+0.1
2,411,252	-				-0.8
2,411,284	+				-1.2
2,411,285	-				+0.1
2,411,352	-				+0.6
2,411,357	+				+0.1
2,411,358	-				+0.8
2,411,358	-				-1.6
2,411,486	-				-0.0
2,411,486	-				+1.6
2,411,486	-				+1.0
2,411,532	+				-1.4
2,411,533	-				-0.3
2,411,533	-				+0.2
2,411,533	-				-0.6
2,411,533	-				+0.9
2,411,538	+				-1.4
2,411,538	+				+0.9
2,411,538	+				+0.6
2,411,539	-				-0.4
2,411,539	-				-0.3
2,411,539	-				+0.0
2,411,539	-				+0.3
2,411,539	-				+0.4
2,411,578	+				-0.0
2,411,651	-		DZA65_RS11340	0.19	-0.8
2,411,767	+		DZA65_RS11340	0.39	-0.3
2,411,860	+		DZA65_RS11340	0.55	+1.9
2,411,860	+		DZA65_RS11340	0.55	-2.0
2,411,860	+		DZA65_RS11340	0.55	-0.7
2,411,862	+		DZA65_RS11340	0.56	-0.2
2,411,862	+		DZA65_RS11340	0.56	+0.3
2,411,862	+		DZA65_RS11340	0.56	-0.7
2,411,862	+		DZA65_RS11340	0.56	-0.8
2,411,862	+		DZA65_RS11340	0.56	-0.1
2,411,862	+		DZA65_RS11340	0.56	-0.8
2,411,862	+		DZA65_RS11340	0.56	-0.4
2,411,862	+		DZA65_RS11340	0.56	-1.0
2,411,862	+		DZA65_RS11340	0.56	+0.2
2,411,863	-		DZA65_RS11340	0.56	+0.2
2,411,863	-		DZA65_RS11340	0.56	+0.6
2,411,863	-		DZA65_RS11340	0.56	-0.2
2,411,863	-		DZA65_RS11340	0.56	-1.3
2,411,863	-		DZA65_RS11340	0.56	-0.0
2,411,871	-		DZA65_RS11340	0.57	+0.8
2,411,882	-		DZA65_RS11340	0.59	-0.0
2,411,882	-		DZA65_RS11340	0.59	+0.3
2,411,904	+		DZA65_RS11340	0.63	-1.4
2,411,904	+		DZA65_RS11340	0.63	-0.4
2,411,904	+		DZA65_RS11340	0.63	+0.1
2,411,904	+		DZA65_RS11340	0.63	-1.3
2,411,904	+		DZA65_RS11340	0.63	-0.6
2,411,904	+		DZA65_RS11340	0.63	-0.0
2,411,904	+		DZA65_RS11340	0.63	-1.3
2,411,904	+		DZA65_RS11340	0.63	-0.6
2,411,904	+		DZA65_RS11340	0.63	-0.7
2,411,904	+		DZA65_RS11340	0.63	-0.4
2,411,905	-		DZA65_RS11340	0.63	-2.3
2,411,905	-		DZA65_RS11340	0.63	-0.6
2,411,905	-		DZA65_RS11340	0.63	+0.3
2,411,905	-		DZA65_RS11340	0.63	-0.4
2,411,905	-		DZA65_RS11340	0.63	-0.8
2,412,004	+		DZA65_RS11340	0.80	-0.0
2,412,004	+		DZA65_RS11340	0.80	+1.1
2,412,005	-		DZA65_RS11340	0.80	+0.2
2,412,007	-		DZA65_RS11340	0.80	+0.3
2,412,028	+		DZA65_RS11340	0.84	-0.4
2,412,028	+		DZA65_RS11340	0.84	+0.2
2,412,028	+		DZA65_RS11340	0.84	-0.0
2,412,028	+		DZA65_RS11340	0.84	-0.0
2,412,028	+		DZA65_RS11340	0.84	-1.0
2,412,029	-		DZA65_RS11340	0.84	-0.1
2,412,115	+				-1.3
2,412,116	-				-1.4
2,412,121	+				-0.7
2,412,121	+				+1.0
2,412,121	+				-1.5
2,412,121	+				-0.4
2,412,122	-				+0.2
2,412,122	-				-0.6
2,412,122	-				-1.3
2,412,122	-				+0.9
2,412,135	+				-1.6
2,412,136	-				-0.0
2,412,139	+				-0.7
2,412,139	+				+0.7
2,412,140	-				-2.0
2,412,140	-				-1.1
2,412,140	-				-0.8
2,412,140	-				+0.1
2,412,157	-				-0.2
2,412,174	-				-0.6
2,412,179	+				+0.3
2,412,179	+				-0.3
2,412,179	+				-1.2
2,412,179	+				+0.4
2,412,179	+				+0.3
2,412,179	+				+0.7
2,412,180	-				-0.3
2,412,180	-				+0.2
2,412,180	-				+0.4
2,412,180	-				-1.0
2,412,180	-				+1.2
2,412,180	-				-0.2
2,412,180	-				-0.0
2,412,180	-				-0.8
2,412,180	-				-1.3
2,412,181	+				+0.7
2,412,184	-				+0.1
2,412,338	-				+0.4
2,412,385	-				-1.2
2,412,385	-				+1.0
2,412,385	-				+0.4
2,412,386	+				-3.3
2,412,386	+				-1.0
2,412,455	+				-1.2
2,412,456	-				-1.3
2,412,456	-				-0.6
2,412,482	-				-2.0
2,412,596	-		DZA65_RS11345	0.15	+0.8
2,412,626	+		DZA65_RS11345	0.20	-0.6
2,412,626	+		DZA65_RS11345	0.20	-0.0
2,412,626	+		DZA65_RS11345	0.20	-0.9
2,412,626	+		DZA65_RS11345	0.20	+1.3
2,412,627	-		DZA65_RS11345	0.21	-0.8
2,412,660	+		DZA65_RS11345	0.27	-0.4
2,412,661	-		DZA65_RS11345	0.27	-0.6
2,412,661	-		DZA65_RS11345	0.27	-0.2
2,412,661	-		DZA65_RS11345	0.27	+0.3
2,412,721	+		DZA65_RS11345	0.38	-0.4
2,412,721	+		DZA65_RS11345	0.38	-1.2
2,412,721	+		DZA65_RS11345	0.38	+0.6
2,412,721	+		DZA65_RS11345	0.38	-0.3
2,412,722	-		DZA65_RS11345	0.39	+1.2
2,412,722	-		DZA65_RS11345	0.39	-1.2
2,412,722	-		DZA65_RS11345	0.39	-0.2
2,412,722	-		DZA65_RS11345	0.39	+1.5
2,412,722	-		DZA65_RS11345	0.39	+0.3
2,412,722	-		DZA65_RS11345	0.39	+0.2
2,412,722	-		DZA65_RS11345	0.39	+0.8
2,412,722	-				+2.3
2,412,722	-		DZA65_RS11345	0.39	-1.2
2,412,831	+		DZA65_RS11345	0.59	-1.0
2,412,831	+		DZA65_RS11345	0.59	-0.4
2,412,831	+		DZA65_RS11345	0.59	-1.6
2,412,831	+		DZA65_RS11345	0.59	-1.3
2,412,831	+		DZA65_RS11345	0.59	+0.9
2,412,831	+		DZA65_RS11345	0.59	-0.1
2,412,832	-		DZA65_RS11345	0.60	-0.3
2,412,832	-		DZA65_RS11345	0.60	-0.7
2,412,832	-		DZA65_RS11345	0.60	-0.8
2,412,832	-		DZA65_RS11345	0.60	+0.9
2,412,898	-		DZA65_RS11345	0.72	-0.0
2,412,920	-		DZA65_RS11345	0.76	-0.6
2,412,929	-		DZA65_RS11345	0.78	-0.4
2,412,963	-		DZA65_RS11345	0.85	-0.8
2,412,963	-		DZA65_RS11345	0.85	-2.0
2,412,978	+		DZA65_RS11345	0.87	+1.0
2,412,979	-		DZA65_RS11345	0.88	-0.9
2,412,979	-		DZA65_RS11345	0.88	-2.3
2,412,979	-		DZA65_RS11345	0.88	-0.5
2,412,979	-		DZA65_RS11345	0.88	-0.4
2,412,979	-		DZA65_RS11345	0.88	+0.8
2,413,034	+				-0.0
2,413,090	+				+1.0
2,413,091	-				-0.1
2,413,091	-				-0.6
2,413,095	+				+0.7
2,413,096	-				-1.6