Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09555

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,007,959	+				-0.2
2,007,960	-				-1.1
2,007,990	+				+0.7
2,007,991	-				+0.5
2,008,092	+				+0.3
2,008,092	+				-1.3
2,008,141	-		DZA65_RS09550	0.12	-0.2
2,008,295	+		DZA65_RS09550	0.39	-0.5
2,008,296	-		DZA65_RS09550	0.39	-1.4
2,008,296	-		DZA65_RS09550	0.39	+0.1
2,008,327	+		DZA65_RS09550	0.44	-0.3
2,008,328	-		DZA65_RS09550	0.45	+0.9
2,008,366	+		DZA65_RS09550	0.51	-0.9
2,008,366	+		DZA65_RS09550	0.51	-1.9
2,008,366	+		DZA65_RS09550	0.51	-0.6
2,008,366	+		DZA65_RS09550	0.51	-0.3
2,008,367	-		DZA65_RS09550	0.51	+1.6
2,008,367	-		DZA65_RS09550	0.51	+0.0
2,008,367	-		DZA65_RS09550	0.51	-0.4
2,008,368	+		DZA65_RS09550	0.51	+0.9
2,008,368	+		DZA65_RS09550	0.51	+0.5
2,008,368	+		DZA65_RS09550	0.51	-0.7
2,008,368	+		DZA65_RS09550	0.51	+0.1
2,008,369	-		DZA65_RS09550	0.52	+0.5
2,008,377	+		DZA65_RS09550	0.53	+0.5
2,008,377	+		DZA65_RS09550	0.53	+0.1
2,008,377	+		DZA65_RS09550	0.53	+0.7
2,008,377	+		DZA65_RS09550	0.53	-2.7
2,008,377	+		DZA65_RS09550	0.53	-0.5
2,008,378	-		DZA65_RS09550	0.53	-0.8
2,008,378	-		DZA65_RS09550	0.53	-0.7
2,008,378	-		DZA65_RS09550	0.53	-0.8
2,008,378	-		DZA65_RS09550	0.53	+0.1
2,008,393	+		DZA65_RS09550	0.56	+0.4
2,008,394	-		DZA65_RS09550	0.56	-0.5
2,008,401	+		DZA65_RS09550	0.57	+0.7
2,008,401	+		DZA65_RS09550	0.57	+1.2
2,008,401	+		DZA65_RS09550	0.57	+0.6
2,008,401	+		DZA65_RS09550	0.57	-0.3
2,008,401	+		DZA65_RS09550	0.57	-0.9
2,008,401	+		DZA65_RS09550	0.57	-0.0
2,008,401	+		DZA65_RS09550	0.57	-0.2
2,008,401	+		DZA65_RS09550	0.57	-1.9
2,008,401	+		DZA65_RS09550	0.57	+0.1
2,008,401	+		DZA65_RS09550	0.57	+0.6
2,008,401	+		DZA65_RS09550	0.57	-0.6
2,008,402	-		DZA65_RS09550	0.57	+0.3
2,008,402	-		DZA65_RS09550	0.57	+0.2
2,008,402	-		DZA65_RS09550	0.57	+0.0
2,008,402	-		DZA65_RS09550	0.57	+1.2
2,008,402	-		DZA65_RS09550	0.57	-0.8
2,008,402	-		DZA65_RS09550	0.57	+0.0
2,008,402	-		DZA65_RS09550	0.57	+0.4
2,008,417	+		DZA65_RS09550	0.60	-1.7
2,008,417	+		DZA65_RS09550	0.60	+1.7
2,008,418	-		DZA65_RS09550	0.60	-1.5
2,008,418	-		DZA65_RS09550	0.60	-0.7
2,008,419	+		DZA65_RS09550	0.60	-1.9
2,008,419	+		DZA65_RS09550	0.60	+0.1
2,008,419	+		DZA65_RS09550	0.60	+1.5
2,008,419	+		DZA65_RS09550	0.60	-0.5
2,008,419	+		DZA65_RS09550	0.60	-0.4
2,008,419	+		DZA65_RS09550	0.60	-1.3
2,008,420	-		DZA65_RS09550	0.61	+0.2
2,008,420	-		DZA65_RS09550	0.61	+1.0
2,008,420	-		DZA65_RS09550	0.61	-0.8
2,008,429	+		DZA65_RS09550	0.62	+0.5
2,008,430	-		DZA65_RS09550	0.62	-0.6
2,008,466	-		DZA65_RS09550	0.69	-0.1
2,008,490	+		DZA65_RS09550	0.73	+0.5
2,008,490	+		DZA65_RS09550	0.73	+0.9
2,008,490	+		DZA65_RS09550	0.73	-0.2
2,008,490	+		DZA65_RS09550	0.73	-0.3
2,008,491	-		DZA65_RS09550	0.73	+2.4
2,008,530	+		DZA65_RS09550	0.80	+0.2
2,008,530	+		DZA65_RS09550	0.80	+0.9
2,008,530	+		DZA65_RS09550	0.80	-0.2
2,008,531	-		DZA65_RS09550	0.80	+0.5
2,008,531	-		DZA65_RS09550	0.80	-1.3
2,008,531	-		DZA65_RS09550	0.80	-0.1
2,008,574	-		DZA65_RS09550	0.87	-2.9
2,008,602	+				-0.4
2,008,603	-				+0.1
2,008,603	-				-0.7
2,008,603	-				+0.1
2,008,652	+				+0.1
2,008,652	+				-1.0
2,008,652	+				+0.9
2,008,652	+				+0.7
2,008,652	+				-0.5
2,008,652	+				-1.4
2,008,653	-				-0.3
2,008,653	-				-0.3
2,008,653	-				+0.1
2,008,653	-				-0.8
2,008,653	-				+0.6
2,008,653	-				+0.1
2,008,653	-				+2.1
2,008,658	-				+0.3
2,008,658	-				+0.5
2,008,661	-				+0.8
2,008,702	+				-1.5
2,008,702	+				+0.7
2,008,702	+				+0.5
2,008,758	+				+0.5
2,008,785	-				-0.3
2,008,827	-				-0.0
2,008,827	-				-0.1
2,008,865	+		DZA65_RS09555	0.13	-0.6
2,008,877	+		DZA65_RS09555	0.17	-0.4
2,008,877	+		DZA65_RS09555	0.17	+2.1
2,008,877	+		DZA65_RS09555	0.17	+0.4
2,008,877	+		DZA65_RS09555	0.17	-0.7
2,008,878	-		DZA65_RS09555	0.18	-0.7
2,008,878	-		DZA65_RS09555	0.18	-0.9
2,008,878	-		DZA65_RS09555	0.18	-0.5
2,008,922	+		DZA65_RS09555	0.35	+0.3
2,008,923	-		DZA65_RS09555	0.35	+0.4
2,008,949	+		DZA65_RS09555	0.45	-0.9
2,008,949	+		DZA65_RS09555	0.45	-0.8
2,008,950	-		DZA65_RS09555	0.46	-0.7
2,008,950	-		DZA65_RS09555	0.46	-0.8
2,009,052	+		DZA65_RS09555	0.86	-0.9
2,009,052	+		DZA65_RS09555	0.86	-2.1
2,009,057	+		DZA65_RS09555	0.88	-0.6
2,009,058	-		DZA65_RS09555	0.88	+0.6
2,009,058	-		DZA65_RS09555	0.88	-0.5
2,009,066	-				-0.1
2,009,170	-				+1.1
2,009,213	-		DZA65_RS09560	0.10	+0.6
2,009,213	-		DZA65_RS09560	0.10	-1.3
2,009,290	-		DZA65_RS09560	0.17	+0.6
2,009,290	-		DZA65_RS09560	0.17	-0.7
2,009,389	-		DZA65_RS09560	0.25	+0.7
2,009,434	+		DZA65_RS09560	0.29	-1.9
2,009,434	+		DZA65_RS09560	0.29	-0.2
2,009,435	-				+0.5
2,009,435	-		DZA65_RS09560	0.29	+0.0
2,009,438	+		DZA65_RS09560	0.29	-1.7
2,009,438	+		DZA65_RS09560	0.29	-0.0
2,009,439	-		DZA65_RS09560	0.29	-0.3
2,009,508	-		DZA65_RS09560	0.35	+1.0
2,009,528	+		DZA65_RS09560	0.37	-0.8
2,009,550	+		DZA65_RS09560	0.39	-0.1
2,009,551	-		DZA65_RS09560	0.39	+0.7
2,009,551	-		DZA65_RS09560	0.39	-0.9
2,009,561	-		DZA65_RS09560	0.40	-1.7
2,009,571	+		DZA65_RS09560	0.40	+0.1
2,009,572	-		DZA65_RS09560	0.41	+0.1
2,009,572	-		DZA65_RS09560	0.41	+1.1
2,009,572	-		DZA65_RS09560	0.41	-0.3
2,009,576	-		DZA65_RS09560	0.41	-0.2
2,009,599	+		DZA65_RS09560	0.43	+1.0
2,009,600	-		DZA65_RS09560	0.43	+0.3
2,009,608	+		DZA65_RS09560	0.44	+0.2
2,009,609	-		DZA65_RS09560	0.44	-1.1
2,009,623	+		DZA65_RS09560	0.45	-0.9
2,009,668	+		DZA65_RS09560	0.49	+0.7
2,009,669	-		DZA65_RS09560	0.49	-0.3
2,009,696	+		DZA65_RS09560	0.51	+1.1
2,009,729	+		DZA65_RS09560	0.54	+0.4
2,009,749	-		DZA65_RS09560	0.55	+0.1
2,009,749	-		DZA65_RS09560	0.55	-0.7
2,009,961	+		DZA65_RS09560	0.73	+0.5
2,009,962	-		DZA65_RS09560	0.74	-0.8
2,009,962	-		DZA65_RS09560	0.74	+0.2
2,009,962	-		DZA65_RS09560	0.74	-0.2
2,009,965	+		DZA65_RS09560	0.74	-1.5
2,009,965	+		DZA65_RS09560	0.74	-0.6
2,009,966	-		DZA65_RS09560	0.74	+2.1
2,009,980	-		DZA65_RS09560	0.75	-0.9
2,009,980	-		DZA65_RS09560	0.75	-0.5
2,010,020	+		DZA65_RS09560	0.78	-0.6
2,010,021	-		DZA65_RS09560	0.79	-1.1
2,010,055	-		DZA65_RS09560	0.81	+0.2