Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09435

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,983,927	-				-0.6
1,983,976	+		DZA65_RS22845	0.23	-0.2
1,983,977	-		DZA65_RS22845	0.23	-1.3
1,983,977	-		DZA65_RS22845	0.23	-0.7
1,984,028	+		DZA65_RS22845	0.54	+0.3
1,984,029	-		DZA65_RS22845	0.54	+1.1
1,984,044	+		DZA65_RS22845	0.63	-0.1
1,984,044	+		DZA65_RS22845	0.63	+1.7
1,984,044	+		DZA65_RS22845	0.63	-0.3
1,984,044	+				-0.5
1,984,045	-		DZA65_RS22845	0.64	-1.3
1,984,097	-				+0.1
1,984,148	+		DZA65_RS09425	0.25	-0.3
1,984,148	+		DZA65_RS09425	0.25	+0.4
1,984,220	+		DZA65_RS09425	0.61	-0.2
1,984,220	+		DZA65_RS09425	0.61	+0.5
1,984,220	+		DZA65_RS09425	0.61	+0.0
1,984,220	+		DZA65_RS09425	0.61	+0.6
1,984,220	+		DZA65_RS09425	0.61	-0.4
1,984,220	+		DZA65_RS09425	0.61	+0.7
1,984,220	+		DZA65_RS09425	0.61	-0.8
1,984,220	+		DZA65_RS09425	0.61	+0.7
1,984,220	+		DZA65_RS09425	0.61	+0.4
1,984,220	+		DZA65_RS09425	0.61	-0.6
1,984,220	+		DZA65_RS09425	0.61	-0.1
1,984,221	-		DZA65_RS09425	0.61	+0.1
1,984,221	-		DZA65_RS09425	0.61	-0.3
1,984,221	-		DZA65_RS09425	0.61	+0.1
1,984,221	-		DZA65_RS09425	0.61	-0.6
1,984,221	-		DZA65_RS09425	0.61	-1.9
1,984,221	-		DZA65_RS09425	0.61	-0.7
1,984,221	-		DZA65_RS09425	0.61	-0.1
1,984,221	-		DZA65_RS09425	0.61	+0.9
1,984,221	-		DZA65_RS09425	0.61	+1.7
1,984,221	-		DZA65_RS09425	0.61	-0.4
1,984,256	-		DZA65_RS09425	0.79	-0.9
1,984,287	+				-0.4
1,984,313	+				+0.4
1,984,313	+				+1.0
1,984,336	+				+0.5
1,984,337	-				-1.5
1,984,337	-				-0.7
1,984,344	-				-0.0
1,984,344	-				+0.7
1,984,344	-				-0.1
1,984,344	-				-0.0
1,984,344	-				-0.7
1,984,364	+				-2.6
1,984,365	-				+0.7
1,984,365	-				-0.2
1,984,365	-				-0.0
1,984,435	+				-0.3
1,984,435	+				-0.9
1,984,436	-				+0.4
1,984,454	+				+0.1
1,984,454	+				-0.1
1,984,454	+				+1.9
1,984,454	+				+1.0
1,984,454	+				-0.2
1,984,454	+				+0.9
1,984,454	+				+1.1
1,984,455	-				+0.7
1,984,456	+				+0.1
1,984,456	+				-0.7
1,984,456	+				+0.1
1,984,456	+				+0.3
1,984,456	+				+0.9
1,984,456	+				+1.1
1,984,456	+				+0.3
1,984,756	+				+0.1
1,984,757	-				+1.3
1,984,763	+				+0.3
1,984,770	-				+0.3
1,984,770	-				-1.4
1,984,808	+				+0.1
1,984,824	+				-0.1
1,984,824	+				+1.7
1,984,824	+				-0.9
1,984,824	+				+0.4
1,984,824	+				-0.7
1,984,825	-				-0.7
1,984,825	-				-0.0
1,984,825	-				-0.7
1,984,825	-				+0.4
1,984,826	+				-0.2
1,984,826	+				+0.5
1,984,826	+				-0.3
1,984,827	-				-0.4
1,984,827	-				-0.5
1,984,833	+				+0.7
1,984,834	-				+0.1
1,984,859	+				-0.7
1,984,859	+				-0.5
1,984,862	-				-0.7
1,984,862	-				-0.6
1,984,891	+				+1.5
1,984,891	+				-1.2
1,984,892	-				+0.7
1,984,898	+				+0.4
1,984,898	+				-0.3
1,984,899	-				+0.6
1,984,901	-				-1.2
1,984,901	-				+0.6
1,984,901	-				-0.9
1,984,953	+		DZA65_RS09435	0.17	-0.1
1,984,953	+		DZA65_RS09435	0.17	-0.2
1,984,953	+		DZA65_RS09435	0.17	-0.1
1,984,954	-		DZA65_RS09435	0.18	+0.3
1,984,954	-		DZA65_RS09435	0.18	-1.2
1,984,954	-		DZA65_RS09435	0.18	+0.4
1,984,954	-		DZA65_RS09435	0.18	+0.8
1,984,972	+		DZA65_RS09435	0.20	-0.9
1,984,972	+		DZA65_RS09435	0.20	-0.5
1,984,973	-		DZA65_RS09435	0.20	+0.4
1,984,988	+		DZA65_RS09435	0.23	+0.9
1,984,988	+		DZA65_RS09435	0.23	+0.7
1,984,989	-		DZA65_RS09435	0.23	+1.2
1,984,989	-		DZA65_RS09435	0.23	+0.2
1,985,007	+		DZA65_RS09435	0.25	-0.8
1,985,008	-		DZA65_RS09435	0.25	-0.8
1,985,008	-		DZA65_RS09435	0.25	-0.9
1,985,008	-		DZA65_RS09435	0.25	+0.6
1,985,155	+		DZA65_RS09435	0.47	+0.3
1,985,156	-		DZA65_RS09435	0.47	+0.7
1,985,156	-		DZA65_RS09435	0.47	+0.8
1,985,156	-		DZA65_RS09435	0.47	-0.2
1,985,156	-				-0.7
1,985,183	+		DZA65_RS09435	0.51	-2.5
1,985,184	-		DZA65_RS09435	0.51	+1.2
1,985,184	-		DZA65_RS09435	0.51	-0.5
1,985,210	-		DZA65_RS09435	0.55	+2.1
1,985,210	-		DZA65_RS09435	0.55	+0.5
1,985,227	+		DZA65_RS09435	0.57	+0.4
1,985,227	+		DZA65_RS09435	0.57	-0.9
1,985,228	-		DZA65_RS09435	0.57	-0.9
1,985,228	-		DZA65_RS09435	0.57	+0.6
1,985,228	-		DZA65_RS09435	0.57	+1.3
1,985,228	-				+1.9
1,985,228	-		DZA65_RS09435	0.57	-1.5
1,985,231	+		DZA65_RS09435	0.58	-0.1
1,985,231	+		DZA65_RS09435	0.58	+1.5
1,985,231	+		DZA65_RS09435	0.58	-2.3
1,985,231	+		DZA65_RS09435	0.58	+0.9
1,985,232	-		DZA65_RS09435	0.58	+0.6
1,985,232	-		DZA65_RS09435	0.58	+0.3
1,985,232	-		DZA65_RS09435	0.58	-0.3
1,985,232	-		DZA65_RS09435	0.58	+2.4
1,985,232	-		DZA65_RS09435	0.58	+0.7
1,985,258	+		DZA65_RS09435	0.61	+0.8
1,985,258	+		DZA65_RS09435	0.61	+0.1
1,985,312	+		DZA65_RS09435	0.69	+0.7
1,985,312	+		DZA65_RS09435	0.69	-0.2
1,985,313	-		DZA65_RS09435	0.69	+0.7
1,985,352	-		DZA65_RS09435	0.75	-1.2
1,985,352	-		DZA65_RS09435	0.75	-0.3
1,985,359	+		DZA65_RS09435	0.76	-0.8
1,985,359	+		DZA65_RS09435	0.76	+0.4
1,985,359	+		DZA65_RS09435	0.76	+3.4
1,985,371	+				+0.7
1,985,372	-		DZA65_RS09435	0.78	-1.3
1,985,372	-		DZA65_RS09435	0.78	-1.3
1,985,444	-		DZA65_RS09435	0.88	-0.4
1,985,444	-		DZA65_RS09435	0.88	+0.8
1,985,444	-		DZA65_RS09435	0.88	+1.8
1,985,444	-		DZA65_RS09435	0.88	-0.7
1,985,481	-				+0.3
1,985,481	-				+1.4
1,985,481	-				-0.9
1,985,481	-				+0.6