Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09090

Experiment: Atlantic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDZA65_RS09085 and DZA65_RS09090 are separated by 19 nucleotidesDZA65_RS09090 and DZA65_RS09095 are separated by 208 nucleotides DZA65_RS09085: DZA65_RS09085 - helix-turn-helix transcriptional regulator, at 1,914,627 to 1,915,442 _RS09085 DZA65_RS09090: DZA65_RS09090 - EamA/RhaT family transporter, at 1,915,462 to 1,915,635 _RS09090 DZA65_RS09095: DZA65_RS09095 - hypothetical protein, at 1,915,844 to 1,916,140 _RS09095 Position (kb) 1915 1916Strain fitness (log2 ratio) -2 -1 0 1 2at 1914.515 kb on + strandat 1914.515 kb on + strandat 1914.515 kb on + strandat 1914.516 kb on - strandat 1914.516 kb on - strandat 1914.516 kb on - strandat 1914.552 kb on - strandat 1914.552 kb on - strandat 1914.632 kb on + strandat 1914.633 kb on - strandat 1914.633 kb on - strandat 1914.634 kb on + strandat 1914.635 kb on - strandat 1914.635 kb on - strandat 1914.635 kb on - strandat 1914.635 kb on - strandat 1914.656 kb on + strandat 1914.657 kb on - strandat 1914.716 kb on - strand, within DZA65_RS09085at 1914.716 kb on - strand, within DZA65_RS09085at 1914.743 kb on + strand, within DZA65_RS09085at 1914.743 kb on + strand, within DZA65_RS09085at 1914.786 kb on + strand, within DZA65_RS09085at 1914.786 kb on + strand, within DZA65_RS09085at 1914.786 kb on + strand, within DZA65_RS09085at 1914.786 kb on + strand, within DZA65_RS09085at 1914.786 kb on + strand, within DZA65_RS09085at 1914.786 kb on + strand, within DZA65_RS09085at 1914.787 kb on - strand, within DZA65_RS09085at 1914.787 kb on - strand, within DZA65_RS09085at 1914.787 kb on - strand, within DZA65_RS09085at 1914.787 kb on - strand, within DZA65_RS09085at 1914.787 kb on - strand, within DZA65_RS09085at 1914.787 kb on - strand, within DZA65_RS09085at 1914.888 kb on + strand, within DZA65_RS09085at 1914.888 kb on + strand, within DZA65_RS09085at 1914.888 kb on + strand, within DZA65_RS09085at 1914.889 kb on - strand, within DZA65_RS09085at 1914.946 kb on - strand, within DZA65_RS09085at 1914.946 kb on - strand, within DZA65_RS09085at 1914.946 kb on - strand, within DZA65_RS09085at 1914.946 kb on - strand, within DZA65_RS09085at 1914.946 kb on - strand, within DZA65_RS09085at 1914.946 kb on - strand, within DZA65_RS09085at 1914.946 kb on - strand, within DZA65_RS09085at 1914.946 kb on - strand, within DZA65_RS09085at 1914.998 kb on - strand, within DZA65_RS09085at 1914.998 kb on - strand, within DZA65_RS09085at 1914.998 kb on - strand, within DZA65_RS09085at 1915.113 kb on + strand, within DZA65_RS09085at 1915.113 kb on + strand, within DZA65_RS09085at 1915.113 kb on + strand, within DZA65_RS09085at 1915.114 kb on - strand, within DZA65_RS09085at 1915.114 kb on - strand, within DZA65_RS09085at 1915.114 kb on - strand, within DZA65_RS09085at 1915.114 kb on - strand, within DZA65_RS09085at 1915.114 kb on - strand, within DZA65_RS09085at 1915.114 kb on - strand, within DZA65_RS09085at 1915.114 kb on - strand, within DZA65_RS09085at 1915.114 kb on - strand, within DZA65_RS09085at 1915.114 kb on - strand, within DZA65_RS09085at 1915.114 kb on - strand, within DZA65_RS09085at 1915.269 kb on + strand, within DZA65_RS09085at 1915.282 kb on - strand, within DZA65_RS09085at 1915.420 kb on - strandat 1915.441 kb on - strandat 1915.445 kb on + strandat 1915.445 kb on + strandat 1915.445 kb on + strandat 1915.445 kb on + strandat 1915.445 kb on + strandat 1915.445 kb on + strandat 1915.445 kb on + strandat 1915.445 kb on + strandat 1915.446 kb on - strandat 1915.446 kb on - strandat 1915.446 kb on - strandat 1915.446 kb on - strandat 1915.446 kb on - strandat 1915.446 kb on - strandat 1915.467 kb on + strandat 1915.589 kb on - strand, within DZA65_RS09090at 1915.589 kb on - strand, within DZA65_RS09090at 1915.589 kb on - strand, within DZA65_RS09090at 1915.589 kb on - strand, within DZA65_RS09090at 1915.590 kb on + strand, within DZA65_RS09090at 1915.590 kb on + strand, within DZA65_RS09090at 1915.590 kb on + strand, within DZA65_RS09090at 1915.590 kb on + strand, within DZA65_RS09090at 1915.590 kb on + strand, within DZA65_RS09090at 1915.590 kb on + strand, within DZA65_RS09090at 1915.590 kb on + strand, within DZA65_RS09090at 1915.590 kb on + strand, within DZA65_RS09090at 1915.590 kb on + strand, within DZA65_RS09090at 1915.591 kb on - strand, within DZA65_RS09090at 1915.591 kb on - strand, within DZA65_RS09090at 1915.591 kb on - strand, within DZA65_RS09090at 1915.591 kb on - strand, within DZA65_RS09090at 1915.591 kb on - strand, within DZA65_RS09090at 1915.591 kb on - strand, within DZA65_RS09090at 1915.591 kb on - strand, within DZA65_RS09090at 1915.591 kb on - strand, within DZA65_RS09090at 1915.798 kb on + strandat 1915.799 kb on - strandat 1915.805 kb on + strandat 1915.805 kb on + strandat 1915.806 kb on - strandat 1915.850 kb on - strandat 1915.850 kb on - strandat 1915.954 kb on + strand, within DZA65_RS09095at 1916.004 kb on - strand, within DZA65_RS09095at 1916.066 kb on + strand, within DZA65_RS09095at 1916.067 kb on - strand, within DZA65_RS09095at 1916.102 kb on + strand, within DZA65_RS09095at 1916.102 kb on + strand, within DZA65_RS09095at 1916.103 kb on - strand, within DZA65_RS09095at 1916.121 kb on + strandat 1916.146 kb on + strandat 1916.186 kb on - strandat 1916.187 kb on + strandat 1916.187 kb on + strandat 1916.187 kb on + strandat 1916.188 kb on - strandat 1916.188 kb on - strandat 1916.197 kb on + strandat 1916.198 kb on - strandat 1916.227 kb on + strandat 1916.227 kb on + strandat 1916.227 kb on + strandat 1916.284 kb on + strandat 1916.299 kb on - strandat 1916.299 kb on - strandat 1916.299 kb on - strandat 1916.299 kb on - strandat 1916.344 kb on + strandat 1916.344 kb on + strandat 1916.345 kb on - strandat 1916.345 kb on - strandat 1916.462 kb on + strandat 1916.463 kb on - strandat 1916.482 kb on + strandat 1916.482 kb on + strandat 1916.598 kb on - strandat 1916.624 kb on + strandat 1916.625 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
remove
1,914,515 + -0.2
1,914,515 + +0.4
1,914,515 + -0.2
1,914,516 - +0.3
1,914,516 - +0.8
1,914,516 - +0.1
1,914,552 - +0.1
1,914,552 - +0.7
1,914,632 + +0.6
1,914,633 - +2.1
1,914,633 - -0.2
1,914,634 + +0.9
1,914,635 - -2.7
1,914,635 - +0.3
1,914,635 - +0.1
1,914,635 - -2.5
1,914,656 + +0.1
1,914,657 - +0.6
1,914,716 - DZA65_RS09085 0.11 +1.0
1,914,716 - DZA65_RS09085 0.11 -0.7
1,914,743 + DZA65_RS09085 0.14 -0.2
1,914,743 + DZA65_RS09085 0.14 +0.6
1,914,786 + DZA65_RS09085 0.19 +0.1
1,914,786 + DZA65_RS09085 0.19 +1.1
1,914,786 + DZA65_RS09085 0.19 +0.1
1,914,786 + DZA65_RS09085 0.19 +0.5
1,914,786 + DZA65_RS09085 0.19 -1.1
1,914,786 + DZA65_RS09085 0.19 +1.7
1,914,787 - DZA65_RS09085 0.20 +0.5
1,914,787 - DZA65_RS09085 0.20 +0.9
1,914,787 - DZA65_RS09085 0.20 +0.1
1,914,787 - DZA65_RS09085 0.20 -0.5
1,914,787 - DZA65_RS09085 0.20 +0.4
1,914,787 - DZA65_RS09085 0.20 +0.2
1,914,888 + DZA65_RS09085 0.32 +0.1
1,914,888 + DZA65_RS09085 0.32 +1.0
1,914,888 + DZA65_RS09085 0.32 +0.2
1,914,889 - DZA65_RS09085 0.32 -1.3
1,914,946 - DZA65_RS09085 0.39 -1.6
1,914,946 - DZA65_RS09085 0.39 -0.6
1,914,946 - DZA65_RS09085 0.39 +0.7
1,914,946 - DZA65_RS09085 0.39 -0.1
1,914,946 - DZA65_RS09085 0.39 +0.2
1,914,946 - DZA65_RS09085 0.39 +1.0
1,914,946 - DZA65_RS09085 0.39 +0.8
1,914,946 - DZA65_RS09085 0.39 +1.5
1,914,998 - DZA65_RS09085 0.45 +0.7
1,914,998 - DZA65_RS09085 0.45 -1.8
1,914,998 - DZA65_RS09085 0.45 -1.5
1,915,113 + DZA65_RS09085 0.60 -0.6
1,915,113 + DZA65_RS09085 0.60 -0.0
1,915,113 + DZA65_RS09085 0.60 +0.4
1,915,114 - DZA65_RS09085 0.60 +0.2
1,915,114 - DZA65_RS09085 0.60 -1.2
1,915,114 - DZA65_RS09085 0.60 +0.6
1,915,114 - DZA65_RS09085 0.60 +0.4
1,915,114 - DZA65_RS09085 0.60 +0.4
1,915,114 - DZA65_RS09085 0.60 +1.2
1,915,114 - DZA65_RS09085 0.60 +1.1
1,915,114 - DZA65_RS09085 0.60 +0.5
1,915,114 - DZA65_RS09085 0.60 -0.4
1,915,114 - DZA65_RS09085 0.60 -0.2
1,915,269 + DZA65_RS09085 0.79 -0.3
1,915,282 - DZA65_RS09085 0.80 +0.1
1,915,420 - -1.5
1,915,441 - -0.2
1,915,445 + -0.9
1,915,445 + +0.4
1,915,445 + -1.1
1,915,445 + +1.3
1,915,445 + -0.4
1,915,445 + -0.6
1,915,445 + +0.1
1,915,445 + +0.1
1,915,446 - -0.1
1,915,446 - +0.1
1,915,446 - -1.5
1,915,446 - -1.9
1,915,446 - -0.5
1,915,446 - -0.4
1,915,467 + +0.8
1,915,589 - DZA65_RS09090 0.73 +0.2
1,915,589 - DZA65_RS09090 0.73 +0.9
1,915,589 - DZA65_RS09090 0.73 -0.2
1,915,589 - DZA65_RS09090 0.73 +0.4
1,915,590 + DZA65_RS09090 0.74 +0.1
1,915,590 + DZA65_RS09090 0.74 +1.1
1,915,590 + DZA65_RS09090 0.74 +1.1
1,915,590 + DZA65_RS09090 0.74 +0.4
1,915,590 + DZA65_RS09090 0.74 -1.1
1,915,590 + DZA65_RS09090 0.74 +1.1
1,915,590 + DZA65_RS09090 0.74 +1.4
1,915,590 + DZA65_RS09090 0.74 -0.2
1,915,590 + DZA65_RS09090 0.74 +1.3
1,915,591 - DZA65_RS09090 0.74 -0.2
1,915,591 - DZA65_RS09090 0.74 -0.1
1,915,591 - DZA65_RS09090 0.74 -0.1
1,915,591 - DZA65_RS09090 0.74 +0.2
1,915,591 - DZA65_RS09090 0.74 -0.4
1,915,591 - DZA65_RS09090 0.74 -0.5
1,915,591 - DZA65_RS09090 0.74 +0.7
1,915,591 - DZA65_RS09090 0.74 +0.5
1,915,798 + -0.6
1,915,799 - -0.2
1,915,805 + -0.1
1,915,805 + -2.4
1,915,806 - +0.8
1,915,850 - +0.9
1,915,850 - +0.2
1,915,954 + DZA65_RS09095 0.37 +0.5
1,916,004 - DZA65_RS09095 0.54 -1.2
1,916,066 + DZA65_RS09095 0.75 -0.3
1,916,067 - DZA65_RS09095 0.75 +1.1
1,916,102 + DZA65_RS09095 0.87 +1.4
1,916,102 + DZA65_RS09095 0.87 +0.6
1,916,103 - DZA65_RS09095 0.87 -2.0
1,916,121 + -0.3
1,916,146 + +0.1
1,916,186 - +0.1
1,916,187 + +0.6
1,916,187 + +0.2
1,916,187 + -0.8
1,916,188 - -0.6
1,916,188 - +0.8
1,916,197 + +1.1
1,916,198 - +0.4
1,916,227 + +1.1
1,916,227 + +1.4
1,916,227 + +0.7
1,916,284 + -0.1
1,916,299 - -0.2
1,916,299 - +0.2
1,916,299 - +0.7
1,916,299 - -0.5
1,916,344 + -0.9
1,916,344 + -0.1
1,916,345 - +0.6
1,916,345 - -0.7
1,916,462 + +0.5
1,916,463 - +0.7
1,916,482 + -0.0
1,916,482 + +0.4
1,916,598 - +0.1
1,916,624 + -0.0
1,916,625 - +0.8

Or see this region's nucleotide sequence