Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08050

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,679,230	+		DZA65_RS08040	0.67	+0.8
1,679,231	-		DZA65_RS08040	0.67	-0.9
1,679,231	-		DZA65_RS08040	0.67	-0.4
1,679,231	-		DZA65_RS08040	0.67	-0.2
1,679,264	-		DZA65_RS08040	0.70	-0.4
1,679,285	+		DZA65_RS08040	0.73	+0.2
1,679,285	+		DZA65_RS08040	0.73	+0.8
1,679,285	+		DZA65_RS08040	0.73	+0.5
1,679,288	+		DZA65_RS08040	0.73	+0.5
1,679,288	+		DZA65_RS08040	0.73	+1.5
1,679,388	-		DZA65_RS08040	0.83	-0.6
1,679,388	-		DZA65_RS08040	0.83	+1.8
1,679,405	+		DZA65_RS08040	0.84	-0.5
1,679,405	+				+1.8
1,679,405	+		DZA65_RS08040	0.84	-0.8
1,679,405	+		DZA65_RS08040	0.84	-0.8
1,679,405	+		DZA65_RS08040	0.84	-0.2
1,679,406	-		DZA65_RS08040	0.84	-0.4
1,679,406	-		DZA65_RS08040	0.84	-0.8
1,679,406	-		DZA65_RS08040	0.84	-0.8
1,679,406	-		DZA65_RS08040	0.84	+0.8
1,679,406	-		DZA65_RS08040	0.84	-0.8
1,679,406	-		DZA65_RS08040	0.84	-1.5
1,679,406	-		DZA65_RS08040	0.84	-0.7
1,679,406	-		DZA65_RS08040	0.84	-0.2
1,679,406	-		DZA65_RS08040	0.84	-1.1
1,679,406	-		DZA65_RS08040	0.84	-0.2
1,679,406	-		DZA65_RS08040	0.84	-0.3
1,679,406	-		DZA65_RS08040	0.84	-2.2
1,679,425	+		DZA65_RS08040	0.86	+0.6
1,679,539	+				-1.8
1,679,539	+				-0.5
1,679,540	-				-0.6
1,679,540	-				-1.6
1,679,540	-				+1.2
1,679,541	+				-1.2
1,679,541	+				-2.8
1,679,541	+				+0.8
1,679,541	+				-0.8
1,679,541	+				+0.8
1,679,541	+				-0.2
1,679,541	+				+1.2
1,679,541	+				-1.4
1,679,541	+				-0.8
1,679,541	+				-0.2
1,679,541	+				+0.0
1,679,541	+				+0.4
1,679,541	+				-0.3
1,679,541	+				+0.8
1,679,541	+				+0.8
1,679,541	+				-0.0
1,679,542	-				+0.4
1,679,542	-				-2.2
1,679,542	-				+0.6
1,679,542	-				+1.0
1,679,542	-				+0.8
1,679,542	-				-0.3
1,679,542	-				+1.2
1,679,542	-				+1.0
1,679,542	-				+0.1
1,679,542	-				-0.6
1,679,542	-				-0.5
1,679,542	-				+1.2
1,679,548	+				+0.8
1,679,549	-				-0.2
1,679,579	+				-2.8
1,679,584	+				+2.2
1,679,584	+				-0.3
1,679,584	+				-0.0
1,679,585	-				-2.3
1,679,585	-				-0.7
1,679,597	+				+0.3
1,679,597	+				+0.6
1,679,597	+				+1.9
1,679,597	+				+0.2
1,679,598	-				-0.8
1,679,598	-				+0.2
1,679,599	+				-1.4
1,679,599	+				+0.2
1,679,599	+				-2.4
1,679,600	-				+0.8
1,679,600	-				+1.9
1,679,600	-				-0.2
1,679,600	-				+0.9
1,679,797	+		DZA65_RS08045	0.39	+0.2
1,679,802	+		DZA65_RS08045	0.40	-0.5
1,679,802	+		DZA65_RS08045	0.40	+0.0
1,679,802	+		DZA65_RS08045	0.40	+0.4
1,679,803	-		DZA65_RS08045	0.40	-0.2
1,679,803	-		DZA65_RS08045	0.40	-0.1
1,679,803	-		DZA65_RS08045	0.40	+0.4
1,679,873	+		DZA65_RS08045	0.51	-0.5
1,679,874	-		DZA65_RS08045	0.51	-0.2
1,679,908	+		DZA65_RS08045	0.56	-0.8
1,679,908	+		DZA65_RS08045	0.56	-1.6
1,679,908	+		DZA65_RS08045	0.56	-0.1
1,679,909	-		DZA65_RS08045	0.56	-0.1
1,679,940	+		DZA65_RS08045	0.61	-0.2
1,679,940	+		DZA65_RS08045	0.61	+0.9
1,679,940	+		DZA65_RS08045	0.61	-0.1
1,679,941	-				+0.5
1,679,941	-		DZA65_RS08045	0.61	-0.4
1,679,941	-		DZA65_RS08045	0.61	-0.8
1,679,941	-		DZA65_RS08045	0.61	-0.3
1,679,991	+		DZA65_RS08045	0.69	-0.8
1,679,991	+		DZA65_RS08045	0.69	-0.3
1,679,992	-				-1.2
1,679,992	-		DZA65_RS08045	0.69	+0.3
1,679,992	-		DZA65_RS08045	0.69	+0.7
1,679,992	-		DZA65_RS08045	0.69	-0.8
1,680,048	+		DZA65_RS08045	0.78	-0.2
1,680,060	+		DZA65_RS08045	0.80	+0.2
1,680,060	+		DZA65_RS08045	0.80	+1.5
1,680,060	+		DZA65_RS08045	0.80	-0.3
1,680,061	-		DZA65_RS08045	0.80	-0.3
1,680,061	-		DZA65_RS08045	0.80	-1.6
1,680,089	+		DZA65_RS08045	0.84	+1.1
1,680,100	-		DZA65_RS08045	0.86	+0.5
1,680,193	+				-0.7
1,680,194	-				+0.2
1,680,194	-				-0.3
1,680,194	-				-1.8
1,680,263	+				-1.2
1,680,263	+				+0.8
1,680,263	+				-0.9
1,680,264	-				+0.1
1,680,264	-				+0.3
1,680,264	-				-0.8
1,680,320	+		DZA65_RS08050	0.15	-1.2
1,680,320	+		DZA65_RS08050	0.15	-0.6
1,680,320	+		DZA65_RS08050	0.15	+0.8
1,680,320	+		DZA65_RS08050	0.15	-0.7
1,680,320	+		DZA65_RS08050	0.15	+0.4
1,680,320	+		DZA65_RS08050	0.15	+0.2
1,680,321	-		DZA65_RS08050	0.15	-0.2
1,680,321	-		DZA65_RS08050	0.15	-1.4
1,680,321	-		DZA65_RS08050	0.15	-1.2
1,680,321	-		DZA65_RS08050	0.15	-1.4
1,680,321	-		DZA65_RS08050	0.15	-1.2
1,680,364	+		DZA65_RS08050	0.20	+1.0
1,680,365	-		DZA65_RS08050	0.20	-0.3
1,680,365	-		DZA65_RS08050	0.20	-1.4
1,680,365	-		DZA65_RS08050	0.20	-0.2
1,680,365	-		DZA65_RS08050	0.20	+0.2
1,680,462	-		DZA65_RS08050	0.31	-0.7
1,680,494	+		DZA65_RS08050	0.34	+1.2
1,680,494	+		DZA65_RS08050	0.34	-0.2
1,680,494	+		DZA65_RS08050	0.34	+0.4
1,680,495	-		DZA65_RS08050	0.34	-0.2
1,680,495	-		DZA65_RS08050	0.34	+0.2
1,680,495	-		DZA65_RS08050	0.34	-1.7
1,680,495	-		DZA65_RS08050	0.34	+0.2
1,680,495	-		DZA65_RS08050	0.34	-0.4
1,680,495	-		DZA65_RS08050	0.34	-1.9
1,680,495	-				+2.3
1,680,495	-				+0.9
1,680,495	-		DZA65_RS08050	0.34	+0.2
1,680,496	+		DZA65_RS08050	0.35	-1.2
1,680,496	+		DZA65_RS08050	0.35	+0.2
1,680,496	+		DZA65_RS08050	0.35	-1.8
1,680,496	+		DZA65_RS08050	0.35	-1.2
1,680,497	-		DZA65_RS08050	0.35	+0.4
1,680,497	-		DZA65_RS08050	0.35	-1.8
1,680,497	-		DZA65_RS08050	0.35	-0.8
1,680,511	+		DZA65_RS08050	0.36	+0.4
1,680,638	+		DZA65_RS08050	0.51	+1.0
1,680,639	-		DZA65_RS08050	0.51	+0.6
1,680,639	-		DZA65_RS08050	0.51	+0.2
1,680,639	-		DZA65_RS08050	0.51	+0.6
1,680,639	-		DZA65_RS08050	0.51	-1.3
1,680,639	-		DZA65_RS08050	0.51	-0.6
1,680,687	-		DZA65_RS08050	0.56	-0.5
1,680,727	+		DZA65_RS08050	0.61	-1.2
1,680,727	+		DZA65_RS08050	0.61	-0.8
1,680,727	+		DZA65_RS08050	0.61	+0.3
1,680,727	+		DZA65_RS08050	0.61	+0.6
1,680,727	+		DZA65_RS08050	0.61	-0.6
1,680,727	+		DZA65_RS08050	0.61	+0.8
1,680,788	+		DZA65_RS08050	0.68	+0.1
1,680,789	-		DZA65_RS08050	0.68	-0.1
1,680,826	+		DZA65_RS08050	0.72	-0.2
1,680,826	+		DZA65_RS08050	0.72	+0.5
1,680,871	+		DZA65_RS08050	0.77	+0.4
1,680,871	+		DZA65_RS08050	0.77	+0.5
1,680,871	+		DZA65_RS08050	0.77	-1.4
1,680,872	-		DZA65_RS08050	0.77	-0.3
1,680,872	-		DZA65_RS08050	0.77	-0.8
1,680,881	-		DZA65_RS08050	0.78	-0.4
1,680,913	+		DZA65_RS08050	0.82	-1.8
1,680,913	+		DZA65_RS08050	0.82	+0.1
1,680,913	+		DZA65_RS08050	0.82	+1.5
1,680,914	-		DZA65_RS08050	0.82	-0.7
1,680,914	-		DZA65_RS08050	0.82	-0.8
1,680,914	-		DZA65_RS08050	0.82	-0.1
1,680,914	-		DZA65_RS08050	0.82	-0.1
1,680,914	-		DZA65_RS08050	0.82	+0.2
1,680,914	-		DZA65_RS08050	0.82	+0.9
1,680,914	-		DZA65_RS08050	0.82	-1.8
1,681,026	+				-0.1
1,681,026	+				-1.8
1,681,027	-				+0.2
1,681,027	-				-0.1
1,681,027	-				+0.7
1,681,027	-				-0.2
1,681,027	-				+1.0
1,681,027	-				+0.2
1,681,027	-				+0.9
1,681,125	+				-0.1
1,681,125	+				+0.2
1,681,126	-				-1.2
1,681,126	-				-1.0
1,681,126	-				-0.1
1,681,126	-				-0.2
1,681,126	-				-0.0
1,681,126	-				-0.7
1,681,262	-		DZA65_RS08055	0.11	-0.8
1,681,317	+		DZA65_RS08055	0.14	-0.4
1,681,317	+		DZA65_RS08055	0.14	+1.2
1,681,318	-		DZA65_RS08055	0.14	-0.5
1,681,318	-		DZA65_RS08055	0.14	+0.3
1,681,318	-		DZA65_RS08055	0.14	-0.3
1,681,320	+				+0.2
1,681,321	-		DZA65_RS08055	0.15	-0.7
1,681,367	+		DZA65_RS08055	0.17	-0.7
1,681,367	+		DZA65_RS08055	0.17	+1.1
1,681,367	+		DZA65_RS08055	0.17	-1.2
1,681,367	+		DZA65_RS08055	0.17	+1.3
1,681,368	-		DZA65_RS08055	0.17	+0.3
1,681,368	-		DZA65_RS08055	0.17	+1.3
1,681,368	-		DZA65_RS08055	0.17	-1.4
1,681,368	-		DZA65_RS08055	0.17	-0.8
1,681,509	+		DZA65_RS08055	0.25	-0.3
1,681,509	+		DZA65_RS08055	0.25	+0.0
1,681,509	+		DZA65_RS08055	0.25	-0.3
1,681,509	+		DZA65_RS08055	0.25	-0.8
1,681,509	+				+0.2
1,681,510	-		DZA65_RS08055	0.25	-0.6
1,681,510	-		DZA65_RS08055	0.25	+0.5
1,681,510	-		DZA65_RS08055	0.25	-0.7
1,681,510	-		DZA65_RS08055	0.25	-1.3
1,681,510	-		DZA65_RS08055	0.25	+0.6
1,681,510	-		DZA65_RS08055	0.25	-0.2
1,681,510	-		DZA65_RS08055	0.25	+0.7
1,681,510	-		DZA65_RS08055	0.25	+1.5
1,681,544	+		DZA65_RS08055	0.27	-0.3
1,681,616	+		DZA65_RS08055	0.31	-0.4
1,681,661	+		DZA65_RS08055	0.34	-0.3
1,681,661	+		DZA65_RS08055	0.34	-0.1
1,681,661	+		DZA65_RS08055	0.34	+0.2
1,681,662	-		DZA65_RS08055	0.34	-0.1
1,681,664	+		DZA65_RS08055	0.34	-0.0
1,681,665	-		DZA65_RS08055	0.34	-0.3
1,681,665	-		DZA65_RS08055	0.34	-0.2
1,681,689	+		DZA65_RS08055	0.36	+1.2
1,681,690	-		DZA65_RS08055	0.36	+0.3
1,681,714	+		DZA65_RS08055	0.37	-0.5
1,681,824	+		DZA65_RS08055	0.43	-0.7
1,681,824	+		DZA65_RS08055	0.43	-1.1
1,681,825	-		DZA65_RS08055	0.43	-1.2
1,682,052	+		DZA65_RS08055	0.57	+0.5
1,682,052	+		DZA65_RS08055	0.57	-0.5