Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05200

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,067,389	+		DZA65_RS05195	0.27	-1.8
1,067,389	+		DZA65_RS05195	0.27	-0.1
1,067,389	+		DZA65_RS05195	0.27	-0.3
1,067,389	+		DZA65_RS05195	0.27	-0.8
1,067,389	+		DZA65_RS05195	0.27	-1.4
1,067,390	-				-1.2
1,067,390	-		DZA65_RS05195	0.27	-0.3
1,067,390	-		DZA65_RS05195	0.27	+0.6
1,067,390	-		DZA65_RS05195	0.27	+0.4
1,067,390	-		DZA65_RS05195	0.27	+0.4
1,067,405	+		DZA65_RS05195	0.29	-1.2
1,067,405	+		DZA65_RS05195	0.29	+1.1
1,067,405	+		DZA65_RS05195	0.29	+1.9
1,067,406	-		DZA65_RS05195	0.29	-1.3
1,067,414	-		DZA65_RS05195	0.29	-0.8
1,067,414	-		DZA65_RS05195	0.29	-0.9
1,067,474	+		DZA65_RS05195	0.34	+1.1
1,067,474	+		DZA65_RS05195	0.34	+0.4
1,067,475	-		DZA65_RS05195	0.34	-0.0
1,067,475	-		DZA65_RS05195	0.34	-1.2
1,067,475	-		DZA65_RS05195	0.34	-1.6
1,067,556	+		DZA65_RS05195	0.41	-3.2
1,067,556	+		DZA65_RS05195	0.41	+1.1
1,067,556	+		DZA65_RS05195	0.41	+0.6
1,067,556	+		DZA65_RS05195	0.41	-0.6
1,067,556	+		DZA65_RS05195	0.41	+0.7
1,067,556	+		DZA65_RS05195	0.41	+0.5
1,067,556	+		DZA65_RS05195	0.41	-0.4
1,067,557	-		DZA65_RS05195	0.41	+2.5
1,067,557	-		DZA65_RS05195	0.41	-0.8
1,067,557	-		DZA65_RS05195	0.41	+1.0
1,067,557	-		DZA65_RS05195	0.41	-1.6
1,067,557	-		DZA65_RS05195	0.41	+0.2
1,067,557	-		DZA65_RS05195	0.41	+1.4
1,067,557	-		DZA65_RS05195	0.41	-0.7
1,067,560	+		DZA65_RS05195	0.41	-0.8
1,067,560	+		DZA65_RS05195	0.41	+0.0
1,067,561	-		DZA65_RS05195	0.42	+0.4
1,067,577	+		DZA65_RS05195	0.43	+0.7
1,067,577	+		DZA65_RS05195	0.43	-0.0
1,067,577	+		DZA65_RS05195	0.43	-0.8
1,067,577	+		DZA65_RS05195	0.43	-0.2
1,067,577	+		DZA65_RS05195	0.43	+0.9
1,067,577	+		DZA65_RS05195	0.43	+0.4
1,067,577	+		DZA65_RS05195	0.43	-1.4
1,067,577	+		DZA65_RS05195	0.43	+0.3
1,067,578	-		DZA65_RS05195	0.43	+1.2
1,067,578	-		DZA65_RS05195	0.43	-2.4
1,067,578	-		DZA65_RS05195	0.43	-0.7
1,067,578	-		DZA65_RS05195	0.43	+0.2
1,067,578	-		DZA65_RS05195	0.43	-0.9
1,067,578	-		DZA65_RS05195	0.43	-0.6
1,067,578	-		DZA65_RS05195	0.43	+0.4
1,067,578	-		DZA65_RS05195	0.43	+0.1
1,067,583	+		DZA65_RS05195	0.43	-0.5
1,067,583	+		DZA65_RS05195	0.43	+1.4
1,067,583	+		DZA65_RS05195	0.43	+0.1
1,067,583	+		DZA65_RS05195	0.43	+2.7
1,067,583	+		DZA65_RS05195	0.43	-1.9
1,067,583	+		DZA65_RS05195	0.43	+1.2
1,067,584	-		DZA65_RS05195	0.43	+0.6
1,067,584	-		DZA65_RS05195	0.43	+0.0
1,067,589	+		DZA65_RS05195	0.44	-0.0
1,067,589	+		DZA65_RS05195	0.44	+1.0
1,067,589	+		DZA65_RS05195	0.44	+0.3
1,067,589	+		DZA65_RS05195	0.44	-0.1
1,067,589	+		DZA65_RS05195	0.44	-0.1
1,067,589	+		DZA65_RS05195	0.44	+0.8
1,067,590	-		DZA65_RS05195	0.44	-2.6
1,067,665	+		DZA65_RS05195	0.50	-0.2
1,067,670	+		DZA65_RS05195	0.51	+0.6
1,067,671	-		DZA65_RS05195	0.51	+0.3
1,067,766	+		DZA65_RS05195	0.59	-1.9
1,067,848	+		DZA65_RS05195	0.65	-0.3
1,067,849	-		DZA65_RS05195	0.65	+1.2
1,067,851	+		DZA65_RS05195	0.66	-0.6
1,067,851	+		DZA65_RS05195	0.66	-0.4
1,067,852	-		DZA65_RS05195	0.66	-0.6
1,067,852	-		DZA65_RS05195	0.66	+0.4
1,067,852	-		DZA65_RS05195	0.66	-1.2
1,067,852	-		DZA65_RS05195	0.66	+0.1
1,067,869	+		DZA65_RS05195	0.67	-0.2
1,067,870	-		DZA65_RS05195	0.67	-1.6
1,067,950	+		DZA65_RS05195	0.74	+0.4
1,067,950	+		DZA65_RS05195	0.74	+0.2
1,067,951	-		DZA65_RS05195	0.74	-0.6
1,067,951	-		DZA65_RS05195	0.74	+0.5
1,067,953	+		DZA65_RS05195	0.74	-1.2
1,067,953	+		DZA65_RS05195	0.74	+1.1
1,067,953	+		DZA65_RS05195	0.74	-0.1
1,067,953	+		DZA65_RS05195	0.74	-0.9
1,067,953	+		DZA65_RS05195	0.74	-0.1
1,067,954	-		DZA65_RS05195	0.74	-0.2
1,067,954	-		DZA65_RS05195	0.74	-0.6
1,067,954	-		DZA65_RS05195	0.74	-0.4
1,067,954	-		DZA65_RS05195	0.74	+0.0
1,067,979	+		DZA65_RS05195	0.76	+0.4
1,067,979	+		DZA65_RS05195	0.76	-0.8
1,067,980	-		DZA65_RS05195	0.76	+0.4
1,067,980	-		DZA65_RS05195	0.76	-2.6
1,068,013	+		DZA65_RS05195	0.79	+0.6
1,068,013	+		DZA65_RS05195	0.79	+1.6
1,068,013	+		DZA65_RS05195	0.79	-0.5
1,068,014	-		DZA65_RS05195	0.79	+0.1
1,068,014	-		DZA65_RS05195	0.79	+1.0
1,068,014	-		DZA65_RS05195	0.79	-1.2
1,068,101	+		DZA65_RS05195	0.86	+0.1
1,068,155	-				+0.5
1,068,172	+				+0.8
1,068,172	+				+1.5
1,068,173	-				+0.3
1,068,173	-				-0.4
1,068,173	-				+1.4
1,068,247	+				-0.5
1,068,247	+				-1.2
1,068,285	-				-0.6
1,068,309	+				+0.8
1,068,332	+				-1.2
1,068,336	+				+1.0
1,068,356	+				+0.4
1,068,436	-				-0.2
1,068,436	-				-0.4
1,068,477	+		DZA65_RS05200	0.12	-1.2
1,068,517	+		DZA65_RS05200	0.16	+0.2
1,068,518	-		DZA65_RS05200	0.16	+0.8
1,068,562	+		DZA65_RS05200	0.21	-1.7
1,068,617	-		DZA65_RS05200	0.27	+0.1
1,068,658	+		DZA65_RS05200	0.32	-2.2
1,068,659	-		DZA65_RS05200	0.32	-0.0
1,068,666	+		DZA65_RS05200	0.33	-0.5
1,068,742	-		DZA65_RS05200	0.41	-1.4
1,068,766	-		DZA65_RS05200	0.44	-0.6
1,068,769	+		DZA65_RS05200	0.44	+0.2
1,068,774	-		DZA65_RS05200	0.45	-1.2
1,068,774	-		DZA65_RS05200	0.45	-0.4
1,068,870	-		DZA65_RS05200	0.56	-0.8
1,068,870	-		DZA65_RS05200	0.56	-0.5
1,068,877	+		DZA65_RS05200	0.56	-0.8
1,068,877	+		DZA65_RS05200	0.56	-0.3
1,068,877	+		DZA65_RS05200	0.56	+0.7
1,068,877	+		DZA65_RS05200	0.56	-1.6
1,068,877	+		DZA65_RS05200	0.56	-1.2
1,068,877	+		DZA65_RS05200	0.56	-0.4
1,068,878	-		DZA65_RS05200	0.56	+1.0
1,068,878	-		DZA65_RS05200	0.56	-0.3
1,068,878	-		DZA65_RS05200	0.56	+0.4
1,068,878	-		DZA65_RS05200	0.56	-0.2
1,068,878	-		DZA65_RS05200	0.56	-0.2
1,068,878	-		DZA65_RS05200	0.56	-1.2
1,068,883	+		DZA65_RS05200	0.57	+0.2
1,068,883	+		DZA65_RS05200	0.57	-0.8
1,068,883	+		DZA65_RS05200	0.57	+0.4
1,068,884	-		DZA65_RS05200	0.57	-1.3
1,068,884	-		DZA65_RS05200	0.57	+0.7
1,068,884	-		DZA65_RS05200	0.57	-1.6
1,068,884	-		DZA65_RS05200	0.57	+0.6
1,068,884	-		DZA65_RS05200	0.57	-0.6
1,068,884	-		DZA65_RS05200	0.57	-0.2
1,068,884	-		DZA65_RS05200	0.57	+0.6
1,068,884	-		DZA65_RS05200	0.57	-0.4
1,068,893	+		DZA65_RS05200	0.58	+0.0
1,068,893	+		DZA65_RS05200	0.58	+0.2
1,068,894	-		DZA65_RS05200	0.58	+0.4
1,068,894	-		DZA65_RS05200	0.58	+0.2
1,068,936	+		DZA65_RS05200	0.63	+1.4
1,068,936	+		DZA65_RS05200	0.63	-1.9
1,068,939	+		DZA65_RS05200	0.63	+0.5
1,068,939	+		DZA65_RS05200	0.63	+1.0
1,069,014	-		DZA65_RS05200	0.72	-0.4
1,069,049	-		DZA65_RS05200	0.76	-0.9
1,069,099	+		DZA65_RS05200	0.81	-0.8
1,069,099	+		DZA65_RS05200	0.81	-0.3
1,069,099	+		DZA65_RS05200	0.81	+0.8
1,069,099	+		DZA65_RS05200	0.81	-0.2
1,069,099	+		DZA65_RS05200	0.81	-1.9
1,069,099	+		DZA65_RS05200	0.81	-0.1
1,069,100	-		DZA65_RS05200	0.81	+0.4
1,069,100	-		DZA65_RS05200	0.81	-1.8
1,069,101	+		DZA65_RS05200	0.81	-0.4
1,069,132	+		DZA65_RS05200	0.85	-2.4
1,069,132	+		DZA65_RS05200	0.85	-0.9
1,069,185	+				+0.6
1,069,198	-				+0.8
1,069,198	-				-0.2
1,069,242	+				-1.4
1,069,266	+				-1.3
1,069,266	+				+0.2
1,069,266	+				+1.0
1,069,266	+				+1.1
1,069,266	+				-0.2
1,069,267	-				-0.8
1,069,270	-				-0.0
1,069,270	-				-0.8
1,069,271	+				+1.0
1,069,301	-				-1.6
1,069,313	+				-0.0
1,069,326	+				+0.6
1,069,326	+				+1.4
1,069,327	-				-0.1
1,069,327	-				+0.8
1,069,331	-				-1.6
1,069,349	+				+1.6
1,069,349	+				-0.3
1,069,349	+				+0.1
1,069,350	-				+0.2
1,069,383	+				-0.5
1,069,384	-				-0.7
1,069,384	-				-0.3
1,069,391	+				+0.0
1,069,392	-				-0.6
1,069,392	-				-1.9
1,069,404	+				-0.4
1,069,436	-				-1.0
1,069,492	+				+0.3
1,069,492	+				+0.7
1,069,492	+				-0.3
1,069,493	-				-0.9
1,069,493	-				+0.8
1,069,493	-				-0.4
1,069,494	+				-0.9
1,069,494	+				+2.7
1,069,495	-				-1.2
1,069,495	-				+0.4
1,069,553	+		DZA65_RS05205	0.17	-0.5
1,069,553	+		DZA65_RS05205	0.17	-0.2
1,069,553	+		DZA65_RS05205	0.17	-0.1
1,069,554	-		DZA65_RS05205	0.17	-0.8
1,069,597	+		DZA65_RS05205	0.24	-1.6
1,069,630	+		DZA65_RS05205	0.30	-1.6
1,069,631	-		DZA65_RS05205	0.30	+0.2
1,069,696	+		DZA65_RS05205	0.41	+0.4
1,069,696	+		DZA65_RS05205	0.41	+0.1
1,069,696	+		DZA65_RS05205	0.41	+1.0
1,069,697	-		DZA65_RS05205	0.42	+0.4
1,069,697	-		DZA65_RS05205	0.42	-1.0
1,069,697	-		DZA65_RS05205	0.42	-0.4
1,069,700	-		DZA65_RS05205	0.42	+1.0
1,069,700	-		DZA65_RS05205	0.42	+1.8
1,069,795	+		DZA65_RS05205	0.59	+0.8
1,069,845	-		DZA65_RS05205	0.67	-0.6
1,069,845	-		DZA65_RS05205	0.67	-0.3
1,069,845	-		DZA65_RS05205	0.67	-1.2
1,069,845	-		DZA65_RS05205	0.67	-0.1
1,069,845	-		DZA65_RS05205	0.67	+0.4
1,069,864	-		DZA65_RS05205	0.71	-0.0
1,069,864	-		DZA65_RS05205	0.71	-1.0
1,069,893	-		DZA65_RS05205	0.76	-0.4
1,069,945	+		DZA65_RS05205	0.85	-0.3
1,069,945	+		DZA65_RS05205	0.85	+0.5
1,069,945	+		DZA65_RS05205	0.85	+0.2
1,069,945	+		DZA65_RS05205	0.85	+1.1
1,069,945	+		DZA65_RS05205	0.85	+0.3
1,069,945	+		DZA65_RS05205	0.85	+0.1
1,069,945	+		DZA65_RS05205	0.85	+0.6
1,069,945	+		DZA65_RS05205	0.85	-0.4
1,069,945	+		DZA65_RS05205	0.85	+0.4
1,069,945	+		DZA65_RS05205	0.85	+0.4
1,069,946	-		DZA65_RS05205	0.85	-0.6
1,069,946	-		DZA65_RS05205	0.85	-0.0
1,069,946	-		DZA65_RS05205	0.85	-1.9
1,069,946	-		DZA65_RS05205	0.85	+0.5
1,069,946	-		DZA65_RS05205	0.85	-2.4
1,069,946	-		DZA65_RS05205	0.85	+0.9
1,069,949	+		DZA65_RS05205	0.85	+0.1
1,069,949	+		DZA65_RS05205	0.85	-0.9
1,069,950	-		DZA65_RS05205	0.86	-0.7
1,069,950	-		DZA65_RS05205	0.86	-1.8
1,069,950	-		DZA65_RS05205	0.86	+1.5
1,069,950	-		DZA65_RS05205	0.86	+0.4
1,069,950	-		DZA65_RS05205	0.86	-0.2
1,069,963	+		DZA65_RS05205	0.88	-0.4
1,069,964	-		DZA65_RS05205	0.88	-0.4
1,070,028	-				-0.3
1,070,032	+				-1.6
1,070,032	+				-0.3
1,070,033	-				-0.9
1,070,033	-				-0.6
1,070,065	-				+0.7
1,070,096	+				+0.9
1,070,096	+				+0.6
1,070,096	+				-0.1
1,070,097	-				+1.1
1,070,097	-				-0.3
1,070,101	+				+0.0
1,070,101	+				+0.4
1,070,101	+				+0.2
1,070,101	+				-0.4
1,070,101	+				+0.5
1,070,101	+				-2.4
1,070,102	-				+1.6
1,070,102	-				+0.4
1,070,102	-				-0.2
1,070,102	-				+0.4
1,070,102	-				+1.0
1,070,102	-				-0.8
1,070,104	+				+0.7
1,070,133	+				+0.3
1,070,133	+				+0.4
1,070,133	+				-0.2
1,070,133	+				+0.7
1,070,133	+				-0.8
1,070,159	+				-0.0
1,070,159	+				-1.1
1,070,159	+				-0.2
1,070,160	-				-1.4
1,070,184	+				+1.1
1,070,185	-				-0.3
1,070,187	+				+0.8
1,070,187	+				-0.2
1,070,187	+				+0.1
1,070,188	-				-1.2
1,070,188	-				+0.7
1,070,189	+				+0.0
1,070,189	+				-1.2
1,070,190	-				-1.0
1,070,190	-				+0.0
1,070,219	+				+0.2