Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05085

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,046,512	+		DZA65_RS05075	0.58	+0.2
1,046,512	+		DZA65_RS05075	0.58	+0.7
1,046,513	-		DZA65_RS05075	0.58	+0.5
1,046,513	-		DZA65_RS05075	0.58	+0.0
1,046,513	-		DZA65_RS05075	0.58	-0.5
1,046,513	-		DZA65_RS05075	0.58	-0.4
1,046,518	+		DZA65_RS05075	0.58	-0.4
1,046,518	+		DZA65_RS05075	0.58	-1.0
1,046,519	-		DZA65_RS05075	0.58	+1.0
1,046,519	-		DZA65_RS05075	0.58	+0.1
1,046,542	+		DZA65_RS05075	0.60	+0.4
1,046,542	+		DZA65_RS05075	0.60	+0.4
1,046,543	-		DZA65_RS05075	0.60	+0.9
1,046,543	-		DZA65_RS05075	0.60	-1.2
1,046,580	+		DZA65_RS05075	0.63	-1.6
1,046,727	+		DZA65_RS05075	0.73	-0.4
1,046,727	+		DZA65_RS05075	0.73	+0.6
1,046,727	+		DZA65_RS05075	0.73	+0.1
1,046,728	-		DZA65_RS05075	0.73	-0.6
1,046,758	+		DZA65_RS05075	0.76	-0.2
1,046,758	+		DZA65_RS05075	0.76	-0.1
1,046,929	+		DZA65_RS05075	0.88	-1.1
1,046,930	-		DZA65_RS05075	0.88	+1.0
1,047,016	+				-0.3
1,047,016	+				+0.1
1,047,110	+				-0.2
1,047,110	+				-1.0
1,047,111	-				-0.2
1,047,111	-				+0.4
1,047,111	-				-1.6
1,047,111	-				+0.4
1,047,111	-				+1.6
1,047,188	+				+0.7
1,047,188	+				+1.1
1,047,189	-				+0.4
1,047,194	+				-1.0
1,047,194	+				+0.4
1,047,194	+				+0.1
1,047,194	+				-1.5
1,047,195	-				-1.2
1,047,195	-				-1.0
1,047,212	+		DZA65_RS05080	0.11	+2.0
1,047,213	-		DZA65_RS05080	0.12	-0.3
1,047,213	-		DZA65_RS05080	0.12	-0.2
1,047,236	-		DZA65_RS05080	0.20	+2.0
1,047,291	-		DZA65_RS05080	0.40	-1.2
1,047,344	+		DZA65_RS05080	0.60	+0.1
1,047,344	+		DZA65_RS05080	0.60	+1.8
1,047,344	+		DZA65_RS05080	0.60	+0.4
1,047,344	+		DZA65_RS05080	0.60	+1.1
1,047,345	-		DZA65_RS05080	0.60	+0.8
1,047,345	-		DZA65_RS05080	0.60	+0.7
1,047,345	-		DZA65_RS05080	0.60	+2.4
1,047,345	-		DZA65_RS05080	0.60	-0.8
1,047,345	-		DZA65_RS05080	0.60	-0.9
1,047,345	-		DZA65_RS05080	0.60	+0.4
1,047,366	+		DZA65_RS05080	0.68	+0.7
1,047,366	+		DZA65_RS05080	0.68	-0.8
1,047,367	-		DZA65_RS05080	0.68	+0.6
1,047,392	+		DZA65_RS05080	0.77	+0.1
1,047,392	+		DZA65_RS05080	0.77	-1.9
1,047,393	-		DZA65_RS05080	0.78	-1.7
1,047,444	+				+0.4
1,047,444	+				+1.4
1,047,445	-				+0.4
1,047,451	+				-1.2
1,047,452	-				+0.6
1,047,482	+				-0.6
1,047,483	-				+0.4
1,047,483	-				-0.3
1,047,483	-				+2.0
1,047,491	+				-0.4
1,047,491	+				-1.0
1,047,491	+				-1.9
1,047,492	-				-0.1
1,047,492	-				-1.4
1,047,560	+				-2.4
1,047,560	+				+0.1
1,047,561	-				-0.3
1,047,561	-				-1.8
1,047,561	-				+0.4
1,047,561	-				-0.4
1,047,561	-				-0.9
1,047,607	-				+0.4
1,047,607	-				-1.2
1,047,607	-				-0.9
1,047,607	-				+1.4
1,047,660	+		DZA65_RS05085	0.12	-0.6
1,047,661	-		DZA65_RS05085	0.13	-0.2
1,047,661	-		DZA65_RS05085	0.13	-1.4
1,047,675	-		DZA65_RS05085	0.13	-2.8
1,047,694	+		DZA65_RS05085	0.15	-1.2
1,047,694	+		DZA65_RS05085	0.15	-1.1
1,047,694	+		DZA65_RS05085	0.15	-2.1
1,047,694	+		DZA65_RS05085	0.15	-0.8
1,047,694	+		DZA65_RS05085	0.15	+0.9
1,047,694	+		DZA65_RS05085	0.15	-0.1
1,047,695	-		DZA65_RS05085	0.15	-1.4
1,047,695	-		DZA65_RS05085	0.15	-1.9
1,047,695	-		DZA65_RS05085	0.15	-0.2
1,047,695	-		DZA65_RS05085	0.15	-0.8
1,047,775	+		DZA65_RS05085	0.20	+0.4
1,047,776	-		DZA65_RS05085	0.20	+0.9
1,047,776	-		DZA65_RS05085	0.20	+0.6
1,047,803	+		DZA65_RS05085	0.22	+0.6
1,047,803	+				-1.9
1,047,803	+		DZA65_RS05085	0.22	+1.0
1,047,803	+		DZA65_RS05085	0.22	-0.7
1,047,804	-		DZA65_RS05085	0.22	+0.3
1,047,804	-		DZA65_RS05085	0.22	+0.5
1,047,804	-		DZA65_RS05085	0.22	-0.4
1,047,805	+		DZA65_RS05085	0.22	-0.4
1,047,805	+		DZA65_RS05085	0.22	+0.4
1,047,805	+		DZA65_RS05085	0.22	+0.5
1,047,805	+		DZA65_RS05085	0.22	-1.6
1,047,805	+		DZA65_RS05085	0.22	-0.2
1,047,805	+		DZA65_RS05085	0.22	+0.4
1,047,805	+		DZA65_RS05085	0.22	+0.1
1,047,806	-		DZA65_RS05085	0.22	-1.6
1,047,860	+		DZA65_RS05085	0.25	+0.7
1,047,860	+		DZA65_RS05085	0.25	+0.4
1,047,860	+		DZA65_RS05085	0.25	+2.4
1,047,861	-		DZA65_RS05085	0.25	-0.1
1,047,861	-		DZA65_RS05085	0.25	+0.2
1,047,951	+		DZA65_RS05085	0.31	+1.1
1,047,951	+		DZA65_RS05085	0.31	-1.2
1,048,016	+		DZA65_RS05085	0.35	+0.2
1,048,016	+		DZA65_RS05085	0.35	+1.2
1,048,017	-		DZA65_RS05085	0.35	-0.9
1,048,017	-		DZA65_RS05085	0.35	-1.9
1,048,083	+		DZA65_RS05085	0.40	+0.7
1,048,083	+		DZA65_RS05085	0.40	-0.1
1,048,084	-		DZA65_RS05085	0.40	-0.2
1,048,103	+		DZA65_RS05085	0.41	-0.3
1,048,103	+		DZA65_RS05085	0.41	-0.6
1,048,104	-		DZA65_RS05085	0.41	-0.5
1,048,104	-		DZA65_RS05085	0.41	+1.6
1,048,114	+		DZA65_RS05085	0.42	+0.5
1,048,114	+		DZA65_RS05085	0.42	-1.4
1,048,114	+		DZA65_RS05085	0.42	-0.3
1,048,115	-		DZA65_RS05085	0.42	-0.6
1,048,115	-		DZA65_RS05085	0.42	+0.9
1,048,115	-		DZA65_RS05085	0.42	-0.9
1,048,125	-		DZA65_RS05085	0.42	-0.3
1,048,127	+		DZA65_RS05085	0.43	-0.1
1,048,127	+		DZA65_RS05085	0.43	-2.6
1,048,127	+		DZA65_RS05085	0.43	+0.9
1,048,127	+		DZA65_RS05085	0.43	+0.3
1,048,133	+		DZA65_RS05085	0.43	-0.9
1,048,133	+		DZA65_RS05085	0.43	-1.9
1,048,134	-		DZA65_RS05085	0.43	-0.4
1,048,134	-		DZA65_RS05085	0.43	+0.1
1,048,136	+		DZA65_RS05085	0.43	+0.1
1,048,136	+		DZA65_RS05085	0.43	-0.7
1,048,136	+		DZA65_RS05085	0.43	-1.8
1,048,136	+		DZA65_RS05085	0.43	-1.6
1,048,136	+		DZA65_RS05085	0.43	-0.0
1,048,136	+		DZA65_RS05085	0.43	+0.6
1,048,136	+		DZA65_RS05085	0.43	-1.6
1,048,136	+		DZA65_RS05085	0.43	+0.7
1,048,136	+		DZA65_RS05085	0.43	-0.3
1,048,137	-		DZA65_RS05085	0.43	-1.2
1,048,137	-		DZA65_RS05085	0.43	+0.1
1,048,137	-		DZA65_RS05085	0.43	-0.9
1,048,137	-		DZA65_RS05085	0.43	+1.1
1,048,170	-		DZA65_RS05085	0.45	+1.4
1,048,218	-		DZA65_RS05085	0.48	-0.5
1,048,228	+		DZA65_RS05085	0.49	+0.6
1,048,228	+		DZA65_RS05085	0.49	-0.9
1,048,228	+		DZA65_RS05085	0.49	-0.2
1,048,229	-		DZA65_RS05085	0.49	-0.2
1,048,319	+		DZA65_RS05085	0.55	+0.4
1,048,319	+		DZA65_RS05085	0.55	-3.4
1,048,319	+		DZA65_RS05085	0.55	-0.4
1,048,319	+		DZA65_RS05085	0.55	-1.0
1,048,319	+		DZA65_RS05085	0.55	-0.8
1,048,319	+		DZA65_RS05085	0.55	+1.0
1,048,319	+		DZA65_RS05085	0.55	+0.3
1,048,319	+		DZA65_RS05085	0.55	+1.2
1,048,319	+		DZA65_RS05085	0.55	-0.9
1,048,319	+		DZA65_RS05085	0.55	+0.1
1,048,320	-		DZA65_RS05085	0.55	+0.4
1,048,320	-		DZA65_RS05085	0.55	-0.6
1,048,320	-		DZA65_RS05085	0.55	+0.2
1,048,320	-		DZA65_RS05085	0.55	-0.7
1,048,320	-		DZA65_RS05085	0.55	-0.4
1,048,321	+		DZA65_RS05085	0.55	-2.6
1,048,322	-		DZA65_RS05085	0.55	-1.6
1,048,403	+		DZA65_RS05085	0.60	-0.0
1,048,403	+		DZA65_RS05085	0.60	+0.3
1,048,403	+		DZA65_RS05085	0.60	+1.1
1,048,404	-		DZA65_RS05085	0.60	-0.4
1,048,404	-		DZA65_RS05085	0.60	+2.7
1,048,404	-		DZA65_RS05085	0.60	+0.2
1,048,404	-		DZA65_RS05085	0.60	-0.2
1,048,404	-		DZA65_RS05085	0.60	-0.4
1,048,404	-		DZA65_RS05085	0.60	+0.0
1,048,404	-		DZA65_RS05085	0.60	-0.5
1,048,484	-		DZA65_RS05085	0.66	-0.4
1,048,577	-		DZA65_RS05085	0.72	-2.4
1,048,587	+		DZA65_RS05085	0.72	-0.4
1,048,642	-		DZA65_RS05085	0.76	+0.1
1,048,642	-		DZA65_RS05085	0.76	+0.3
1,048,642	-		DZA65_RS05085	0.76	-0.6
1,048,653	+		DZA65_RS05085	0.76	-0.0
1,048,653	+		DZA65_RS05085	0.76	-0.4
1,048,653	+		DZA65_RS05085	0.76	+0.6
1,048,653	+		DZA65_RS05085	0.76	+0.8
1,048,654	-		DZA65_RS05085	0.77	+0.3
1,048,654	-		DZA65_RS05085	0.77	+0.5
1,048,654	-		DZA65_RS05085	0.77	+0.5
1,048,654	-		DZA65_RS05085	0.77	+0.2
1,048,814	-		DZA65_RS05085	0.87	+0.4
1,048,821	+		DZA65_RS05085	0.87	-0.2
1,048,821	+		DZA65_RS05085	0.87	-0.4
1,048,821	+		DZA65_RS05085	0.87	+1.2
1,048,822	-		DZA65_RS05085	0.87	-0.9
1,048,822	-		DZA65_RS05085	0.87	+1.0
1,048,822	-		DZA65_RS05085	0.87	-1.8
1,048,822	-		DZA65_RS05085	0.87	-2.4
1,048,822	-		DZA65_RS05085	0.87	-1.0
1,048,838	+		DZA65_RS05085	0.88	-0.6
1,048,838	+		DZA65_RS05085	0.88	-0.6
1,048,838	+		DZA65_RS05085	0.88	-0.4
1,048,838	+		DZA65_RS05085	0.88	+0.4
1,048,838	+		DZA65_RS05085	0.88	+1.0
1,048,838	+		DZA65_RS05085	0.88	-1.2
1,048,838	+		DZA65_RS05085	0.88	-1.9
1,048,838	+		DZA65_RS05085	0.88	-0.6
1,048,838	+		DZA65_RS05085	0.88	+0.4
1,048,838	+		DZA65_RS05085	0.88	+0.6
1,048,838	+		DZA65_RS05085	0.88	-0.5
1,048,838	+		DZA65_RS05085	0.88	+1.4
1,048,838	+		DZA65_RS05085	0.88	+0.5
1,048,838	+		DZA65_RS05085	0.88	+0.9
1,048,838	+		DZA65_RS05085	0.88	-1.2
1,048,839	-		DZA65_RS05085	0.88	-0.8
1,048,839	-		DZA65_RS05085	0.88	+1.4
1,048,839	-		DZA65_RS05085	0.88	-0.7
1,048,839	-		DZA65_RS05085	0.88	+0.4
1,048,839	-		DZA65_RS05085	0.88	-0.1
1,048,839	-		DZA65_RS05085	0.88	-0.5
1,048,839	-		DZA65_RS05085	0.88	+0.8
1,048,839	-		DZA65_RS05085	0.88	-0.0
1,048,839	-		DZA65_RS05085	0.88	-1.3
1,048,839	-		DZA65_RS05085	0.88	-1.4
1,048,839	-		DZA65_RS05085	0.88	+1.0
1,048,839	-		DZA65_RS05085	0.88	-0.0
1,048,900	+				-1.4
1,048,901	-				-0.1
1,048,901	-				-0.6
1,048,912	+				-0.8
1,048,912	+				-0.2
1,048,912	+				+0.2
1,048,912	+				-0.1
1,048,913	-				+0.2
1,048,913	-				+0.3
1,048,914	+				+1.1
1,048,914	+				-0.0
1,048,914	+				+0.3
1,048,914	+				+0.6
1,048,914	+				+0.4
1,048,914	+				-0.6
1,048,914	+				+0.5
1,048,914	+				+0.7
1,048,914	+				-0.6
1,048,914	+				-0.0
1,048,914	+				+0.4
1,048,914	+				-1.9
1,048,915	-				-1.9
1,048,915	-				+0.2
1,048,915	-				+0.4
1,048,915	-				+0.1
1,048,915	-				-0.0
1,048,915	-				-0.2
1,048,915	-				+1.1
1,048,915	-				-0.2
1,048,915	-				-0.1
1,048,918	+				+0.4
1,048,918	+				-0.3
1,048,918	+				+0.6
1,048,918	+				-0.5
1,048,919	-				+0.3
1,048,919	-				-0.7
1,048,919	-				-1.5
1,048,919	-				-1.2
1,048,936	+				+0.3
1,048,937	-				-0.3
1,048,951	+				-1.1
1,048,952	-				+0.1
1,048,990	+				+0.2
1,049,007	+				+0.2
1,049,007	+				+0.4
1,049,011	+				-0.1
1,049,011	+				+1.6
1,049,011	+				-0.5
1,049,011	+				-1.2
1,049,011	+				+1.2
1,049,012	-				+1.4
1,049,012	-				+1.0
1,049,012	-				+2.0
1,049,012	-				+1.8
1,049,012	-				-0.5
1,049,012	-				+0.1
1,049,012	-				+0.0
1,049,012	-				+0.1
1,049,015	+				+0.6
1,049,015	+				+1.0
1,049,015	+				+0.1
1,049,015	+				-0.8
1,049,015	+				+0.0
1,049,015	+				+0.0
1,049,015	+				+0.0
1,049,015	+				+0.4
1,049,015	+				+0.2
1,049,015	+				-0.6
1,049,016	-				+0.4
1,049,016	-				+0.1
1,049,020	+				+0.7
1,049,020	+				-1.9
1,049,025	-				-0.1
1,049,025	-				-0.0
1,049,040	+				+0.1
1,049,041	-				+1.2
1,049,041	-				-0.6
1,049,044	+				-0.4
1,049,044	+				+0.4
1,049,044	+				-1.2
1,049,045	-				-0.3
1,049,061	+				-0.4
1,049,061	+				+0.4
1,049,062	-				-1.5
1,049,062	-				+0.6
1,049,065	+				-0.6
1,049,065	+				-0.2
1,049,065	+				-0.3
1,049,065	+				+0.5
1,049,065	+				+0.1
1,049,065	+				-1.6
1,049,065	+				-0.2
1,049,066	-				-1.4
1,049,066	-				-0.2
1,049,066	-				-0.8
1,049,066	-				-1.7
1,049,066	-				-0.2
1,049,066	-				+0.2
1,049,066	-				-0.2
1,049,066	-				-0.9
1,049,068	+				-1.4
1,049,068	+				+0.4
1,049,068	+				+0.9
1,049,068	+				-0.6
1,049,069	-				-0.8
1,049,069	-				-1.4
1,049,069	-				-0.7
1,049,092	+				+0.7
1,049,092	+				+0.2
1,049,093	-				-0.3
1,049,093	-				+0.8
1,049,093	-				-2.2
1,049,187	+		DZA65_RS05090	0.39	+2.0
1,049,187	+		DZA65_RS05090	0.39	+0.6
1,049,187	+		DZA65_RS05090	0.39	-0.1
1,049,187	+		DZA65_RS05090	0.39	-0.8
1,049,188	-		DZA65_RS05090	0.40	+0.0
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