Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22980

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,109,797	-				+0.7
4,109,842	+				-1.1
4,109,843	-				+0.4
4,109,843	-				+1.0
4,109,843	-				+1.4
4,109,843	-				-0.1
4,109,843	-				-0.6
4,109,843	-				+1.2
4,109,843	-				+1.8
4,109,843	-				+2.8
4,109,868	-				+1.1
4,109,868	-				+2.0
4,109,868	-				+0.8
4,109,868	-				+1.3
4,109,868	-				+0.6
4,109,963	-		DZA65_RS19005	0.22	+0.4
4,109,995	-		DZA65_RS19005	0.26	-0.1
4,110,069	-		DZA65_RS19005	0.36	+1.0
4,110,069	-		DZA65_RS19005	0.36	-3.3
4,110,069	-		DZA65_RS19005	0.36	-0.3
4,110,074	-		DZA65_RS19005	0.36	+0.4
4,110,074	-		DZA65_RS19005	0.36	+0.8
4,110,103	-		DZA65_RS19005	0.40	-2.6
4,110,220	-		DZA65_RS19005	0.56	+0.0
4,110,220	-		DZA65_RS19005	0.56	-0.6
4,110,220	-		DZA65_RS19005	0.56	+1.7
4,110,220	-		DZA65_RS19005	0.56	+0.8
4,110,220	-		DZA65_RS19005	0.56	+1.2
4,110,220	-		DZA65_RS19005	0.56	+0.1
4,110,220	-		DZA65_RS19005	0.56	+0.1
4,110,220	-		DZA65_RS19005	0.56	+0.2
4,110,220	-		DZA65_RS19005	0.56	-1.0
4,110,220	-		DZA65_RS19005	0.56	+0.8
4,110,220	-		DZA65_RS19005	0.56	+0.2
4,110,222	+		DZA65_RS19005	0.56	-0.1
4,110,223	-		DZA65_RS19005	0.56	-0.0
4,110,223	-		DZA65_RS19005	0.56	+1.2
4,110,223	-		DZA65_RS19005	0.56	+0.3
4,110,223	-		DZA65_RS19005	0.56	-1.1
4,110,223	-		DZA65_RS19005	0.56	-0.1
4,110,553	-				+0.1
4,110,599	-				-0.0
4,110,599	-				+0.2
4,110,602	-				+0.8
4,110,639	-				+0.7
4,110,656	-				+0.0
4,110,674	+				-0.6
4,110,675	-				+2.4
4,110,675	-				-0.9
4,110,707	-				+1.0
4,110,740	+				+0.2
4,110,740	+				+0.7
4,110,741	-				+1.0
4,110,741	-				+0.0
4,110,743	+				+0.3
4,110,785	+				+0.0
4,110,840	+		DZA65_RS22980	0.26	-0.1
4,110,861	+		DZA65_RS22980	0.36	+0.7
4,110,862	-		DZA65_RS22980	0.36	-1.0
4,110,903	+		DZA65_RS22980	0.55	+0.4
4,110,903	+		DZA65_RS22980	0.55	+0.0
4,110,903	+		DZA65_RS22980	0.55	+0.7
4,110,903	+		DZA65_RS22980	0.55	+0.0
4,110,904	-		DZA65_RS22980	0.56	+1.1
4,110,921	+		DZA65_RS22980	0.63	+0.4
4,110,921	+				-0.6
4,110,921	+		DZA65_RS22980	0.63	-0.3
4,110,921	+		DZA65_RS22980	0.63	-0.4
4,110,921	+		DZA65_RS22980	0.63	+0.4
4,110,921	+		DZA65_RS22980	0.63	-2.4
4,110,921	+		DZA65_RS22980	0.63	-0.6
4,110,921	+		DZA65_RS22980	0.63	-0.7
4,110,921	+		DZA65_RS22980	0.63	-2.5
4,110,921	+		DZA65_RS22980	0.63	+0.0
4,110,921	+		DZA65_RS22980	0.63	+0.9
4,110,921	+		DZA65_RS22980	0.63	-0.4
4,110,921	+		DZA65_RS22980	0.63	-1.0
4,110,921	+		DZA65_RS22980	0.63	+0.2
4,110,921	+		DZA65_RS22980	0.63	-1.9
4,110,921	+		DZA65_RS22980	0.63	-1.0
4,110,921	+		DZA65_RS22980	0.63	-1.1
4,110,921	+		DZA65_RS22980	0.63	+2.0
4,110,921	+		DZA65_RS22980	0.63	-0.2
4,110,922	-		DZA65_RS22980	0.64	-0.2
4,110,922	-		DZA65_RS22980	0.64	-1.3
4,110,922	-		DZA65_RS22980	0.64	+0.6
4,110,922	-		DZA65_RS22980	0.64	-0.1
4,110,922	-		DZA65_RS22980	0.64	+0.6
4,110,922	-		DZA65_RS22980	0.64	+0.5
4,110,922	-		DZA65_RS22980	0.64	+0.8
4,110,922	-		DZA65_RS22980	0.64	+1.1
4,110,922	-		DZA65_RS22980	0.64	-0.2
4,110,922	-		DZA65_RS22980	0.64	+0.0
4,110,922	-		DZA65_RS22980	0.64	+0.3
4,110,922	-		DZA65_RS22980	0.64	-0.1
4,110,922	-		DZA65_RS22980	0.64	+0.1
4,110,922	-		DZA65_RS22980	0.64	-1.2
4,110,925	+		DZA65_RS22980	0.65	-1.9
4,110,925	+		DZA65_RS22980	0.65	-0.4
4,110,925	+		DZA65_RS22980	0.65	-2.4
4,110,925	+		DZA65_RS22980	0.65	-1.3
4,110,925	+		DZA65_RS22980	0.65	-0.5
4,110,925	+		DZA65_RS22980	0.65	+0.4
4,110,926	-		DZA65_RS22980	0.66	+1.0
4,110,926	-				+2.3
4,110,926	-		DZA65_RS22980	0.66	-0.7
4,110,926	-				+1.4
4,110,926	-		DZA65_RS22980	0.66	-0.4
4,110,960	+		DZA65_RS22980	0.81	-1.6
4,110,961	-		DZA65_RS22980	0.82	+0.9
4,110,977	-		DZA65_RS22980	0.89	-0.3
4,110,981	+				-1.6
4,110,981	+				+0.7
4,110,981	+				+1.2
4,110,982	-				-0.2
4,110,982	-				+0.3
4,110,993	+				+0.8
4,111,013	+				-0.1
4,111,013	+				+0.0
4,111,013	+				+1.4
4,111,014	-				-0.3
4,111,014	-				+0.4
4,111,014	-				+1.1
4,111,014	-				-0.9
4,111,015	+				-0.6
4,111,015	+				-2.4
4,111,015	+				-0.4
4,111,016	-				-0.3
4,111,061	-				+0.5
4,111,061	-				-2.0
4,111,061	-				-0.3
4,111,123	+				+0.7
4,111,129	+				-1.6
4,111,129	+				-0.1
4,111,129	+				+1.6
4,111,129	+				+0.6
4,111,129	+				+0.3
4,111,130	-				-0.0
4,111,133	+				+2.3
4,111,133	+				+0.3
4,111,134	-				+0.0
4,111,134	-				-1.5
4,111,134	-				+0.1
4,111,134	-				-0.2
4,111,201	+				-1.4
4,111,201	+				-0.1
4,111,207	+				+1.0
4,111,207	+				-0.6
4,111,207	+				+0.3
4,111,208	-				-1.1
4,111,208	-				+0.3
4,111,208	-				-1.3
4,111,208	-				-0.6
4,111,208	-				-1.9
4,111,260	+				+2.8
4,111,260	+				-0.8
4,111,260	+				-0.6
4,111,260	+				-0.1
4,111,260	+				-2.1
4,111,261	-				+0.0
4,111,261	-				-1.1
4,111,261	-				-0.3
4,111,261	-				-1.2
4,111,261	-				-0.1
4,111,261	-				-0.3
4,111,261	-				-0.4
4,111,299	+				-1.1
4,111,299	+				-0.9
4,111,300	-				+1.4
4,111,452	-		DZA65_RS19010	0.18	-0.0
4,111,453	+		DZA65_RS19010	0.18	-0.4
4,111,453	+		DZA65_RS19010	0.18	+1.6
4,111,453	+		DZA65_RS19010	0.18	-0.7
4,111,454	-		DZA65_RS19010	0.18	-0.6
4,111,457	+		DZA65_RS19010	0.18	-0.2
4,111,457	+		DZA65_RS19010	0.18	+0.9
4,111,457	+		DZA65_RS19010	0.18	-1.3
4,111,458	-		DZA65_RS19010	0.19	+0.1
4,111,458	-		DZA65_RS19010	0.19	-0.6
4,111,465	+		DZA65_RS19010	0.19	+0.1
4,111,496	+		DZA65_RS19010	0.21	-0.3
4,111,496	+		DZA65_RS19010	0.21	+1.2
4,111,496	+		DZA65_RS19010	0.21	-0.6
4,111,497	-		DZA65_RS19010	0.21	-0.6
4,111,497	-		DZA65_RS19010	0.21	-0.4
4,111,508	+		DZA65_RS19010	0.22	-0.6
4,111,508	+		DZA65_RS19010	0.22	-1.1
4,111,508	+		DZA65_RS19010	0.22	-2.0
4,111,508	+		DZA65_RS19010	0.22	-0.5
4,111,508	+		DZA65_RS19010	0.22	-1.6
4,111,508	+		DZA65_RS19010	0.22	+0.9
4,111,508	+		DZA65_RS19010	0.22	-0.0
4,111,508	+		DZA65_RS19010	0.22	-0.6
4,111,509	-				-0.6
4,111,509	-		DZA65_RS19010	0.22	-1.7
4,111,509	-		DZA65_RS19010	0.22	+0.4
4,111,509	-		DZA65_RS19010	0.22	+0.1
4,111,550	+		DZA65_RS19010	0.25	-2.6
4,111,550	+		DZA65_RS19010	0.25	-0.4
4,111,550	+		DZA65_RS19010	0.25	-0.4
4,111,550	+		DZA65_RS19010	0.25	-0.6
4,111,550	+		DZA65_RS19010	0.25	-0.6
4,111,550	+		DZA65_RS19010	0.25	+0.4
4,111,550	+		DZA65_RS19010	0.25	+0.6
4,111,551	-		DZA65_RS19010	0.25	-1.0
4,111,551	-		DZA65_RS19010	0.25	-0.4
4,111,551	-		DZA65_RS19010	0.25	-0.6
4,111,551	-		DZA65_RS19010	0.25	-2.4
4,111,551	-		DZA65_RS19010	0.25	+1.4
4,111,551	-		DZA65_RS19010	0.25	+0.8
4,111,560	-		DZA65_RS19010	0.26	-0.3
4,111,646	+		DZA65_RS19010	0.33	+0.4
4,111,676	-		DZA65_RS19010	0.35	-1.1
4,111,684	-		DZA65_RS19010	0.35	+0.3
4,111,728	+		DZA65_RS19010	0.39	+1.2
4,111,728	+		DZA65_RS19010	0.39	-0.6
4,111,728	+		DZA65_RS19010	0.39	-1.4
4,111,728	+		DZA65_RS19010	0.39	-0.0
4,111,728	+		DZA65_RS19010	0.39	-0.3
4,111,728	+		DZA65_RS19010	0.39	+0.4
4,111,728	+		DZA65_RS19010	0.39	-0.8
4,111,728	+		DZA65_RS19010	0.39	-1.3
4,111,728	+		DZA65_RS19010	0.39	-0.5
4,111,728	+		DZA65_RS19010	0.39	-0.6
4,111,729	-		DZA65_RS19010	0.39	-1.6
4,111,729	-		DZA65_RS19010	0.39	+0.9
4,111,729	-		DZA65_RS19010	0.39	-0.8
4,111,729	-				-1.6
4,111,928	+		DZA65_RS19010	0.53	+0.2
4,111,929	-		DZA65_RS19010	0.54	-2.1
4,111,946	+		DZA65_RS19010	0.55	-0.6
4,111,946	+		DZA65_RS19010	0.55	-0.3
4,111,946	+		DZA65_RS19010	0.55	-0.4
4,111,946	+		DZA65_RS19010	0.55	-0.1
4,111,948	+		DZA65_RS19010	0.55	-0.4
4,111,949	-		DZA65_RS19010	0.55	-0.3