Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21675

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	PDB
				remove
4,685,659	+	DZA65_RS21670	0.85	-2.2
4,685,659	+	DZA65_RS21670	0.85	-0.9
4,685,659	+	DZA65_RS21670	0.85	-0.6
4,685,659	+	DZA65_RS21670	0.85	+0.1
4,685,659	+	DZA65_RS21670	0.85	+0.9
4,685,660	-	DZA65_RS21670	0.85	+2.5
4,685,660	-	DZA65_RS21670	0.85	-0.6
4,685,660	-	DZA65_RS21670	0.85	-0.4
4,685,660	-	DZA65_RS21670	0.85	-0.4
4,685,668	+	DZA65_RS21670	0.86	+1.6
4,685,668	+	DZA65_RS21670	0.86	-0.8
4,685,668	+	DZA65_RS21670	0.86	-1.4
4,685,668	+	DZA65_RS21670	0.86	+0.1
4,685,668	+	DZA65_RS21670	0.86	+0.1
4,685,668	+	DZA65_RS21670	0.86	-0.4
4,685,668	+	DZA65_RS21670	0.86	+0.6
4,685,668	+	DZA65_RS21670	0.86	-0.9
4,685,668	+	DZA65_RS21670	0.86	-1.6
4,685,668	+	DZA65_RS21670	0.86	-0.4
4,685,668	+	DZA65_RS21670	0.86	+2.8
4,685,668	+	DZA65_RS21670	0.86	-0.9
4,685,668	+	DZA65_RS21670	0.86	-0.7
4,685,668	+	DZA65_RS21670	0.86	-1.8
4,685,669	-	DZA65_RS21670	0.86	+0.3
4,685,669	-	DZA65_RS21670	0.86	-0.4
4,685,669	-	DZA65_RS21670	0.86	+0.7
4,685,669	-	DZA65_RS21670	0.86	-1.2
4,685,669	-	DZA65_RS21670	0.86	+2.0
4,685,669	-	DZA65_RS21670	0.86	+2.3
4,685,669	-	DZA65_RS21670	0.86	+0.1
4,685,669	-	DZA65_RS21670	0.86	+0.3
4,685,669	-	DZA65_RS21670	0.86	+0.2
4,685,669	-	DZA65_RS21670	0.86	-0.5
4,685,670	+	DZA65_RS21670	0.86	-0.0
4,685,670	+	DZA65_RS21670	0.86	+0.3
4,685,670	+	DZA65_RS21670	0.86	-0.1
4,685,670	+	DZA65_RS21670	0.86	-0.4
4,685,670	+	DZA65_RS21670	0.86	+0.1
4,685,670	+	DZA65_RS21670	0.86	-0.4
4,685,670	+	DZA65_RS21670	0.86	-1.2
4,685,670	+	DZA65_RS21670	0.86	-0.3
4,685,670	+	DZA65_RS21670	0.86	+0.6
4,685,671	-	DZA65_RS21670	0.86	+0.5
4,685,671	-	DZA65_RS21670	0.86	-0.7
4,685,671	-	DZA65_RS21670	0.86	+0.3
4,685,671	-	DZA65_RS21670	0.86	+0.4
4,685,671	-	DZA65_RS21670	0.86	-1.4
4,685,671	-	DZA65_RS21670	0.86	+0.0
4,685,671	-	DZA65_RS21670	0.86	+0.3
4,685,671	-	DZA65_RS21670	0.86	+1.0
4,685,671	-	DZA65_RS21670	0.86	+0.2
4,685,671	-	DZA65_RS21670	0.86	+1.1
4,685,671	-	DZA65_RS21670	0.86	-0.1
4,685,671	-	DZA65_RS21670	0.86	-1.2
4,685,671	-	DZA65_RS21670	0.86	-1.3
4,685,671	-	DZA65_RS21670	0.86	+0.6
4,685,671	-	DZA65_RS21670	0.86	+0.0
4,685,671	-	DZA65_RS21670	0.86	-0.2
4,685,716	+			-1.8
4,685,716	+			-0.4
4,685,721	+			-0.0
4,685,721	+			+0.4
4,685,721	+			+1.1
4,685,721	+			+1.0
4,685,722	-			-1.0
4,685,730	+			+0.0
4,685,743	+			-1.0
4,685,744	-			+2.1
4,685,744	-			-0.7
4,685,779	+			+0.6
4,685,808	-			+1.3
4,685,808	-			+0.7
4,685,823	-			-0.1
4,685,823	-			+2.1
4,685,826	+			-2.6
4,685,827	-			-1.4
4,685,827	-			-0.2
4,685,922	+			+0.3
4,685,923	-			-0.2
4,686,066	+			-2.1
4,686,066	+			-1.0
4,686,066	+			+1.4
4,686,067	-			-0.8
4,686,067	-			-0.1
4,686,067	-			+0.1
4,686,070	-			-0.0
4,686,096	+			+1.6
4,686,097	-			-0.9
4,686,097	-			+0.6
4,686,097	-			+0.1
4,686,140	+			+0.1
4,686,140	+			-1.4
4,686,140	+			-0.4
4,686,140	+			+0.2
4,686,140	+			+0.4
4,686,140	+			-0.0
4,686,140	+			+0.4
4,686,140	+			+0.9
4,686,140	+			-1.0
4,686,140	+			+0.1
4,686,140	+			+0.1
4,686,140	+			-1.2
4,686,140	+			+0.1
4,686,140	+			-0.3
4,686,140	+			+1.8
4,686,140	+			-0.1
4,686,141	-			-0.0
4,686,141	-			+0.3
4,686,141	-			-1.1
4,686,141	-			+0.9
4,686,141	-			+0.5
4,686,141	-			+0.1
4,686,141	-			-0.8
4,686,141	-			-0.8
4,686,141	-			-0.6
4,686,141	-			+0.9
4,686,141	-			-0.4
4,686,141	-			+1.0
4,686,141	-			-0.4
4,686,141	-			-1.0
4,686,141	-			-1.0
4,686,141	-			-0.2
4,686,228	-			+0.3
4,686,234	-			-0.9
4,686,308	-			-0.4
4,686,308	-			+0.6
4,686,325	-			+1.1
4,686,401	-			+0.5
4,686,413	+			+0.4
4,686,426	+			-1.6
4,686,468	+			+0.7
4,686,473	-			+0.7
4,686,483	+			-0.3
4,686,484	-			+0.8
4,686,502	+			+1.2
4,686,508	+			+0.3
4,686,512	-			+0.8
4,686,512	-			-0.2
4,686,575	-			+1.0
4,686,582	+			+0.4
4,686,583	-			-0.1
4,686,583	-			+1.0
4,686,583	-			+0.1
4,686,583	-			-1.8
4,686,583	-			+1.6
4,686,584	+			+0.9
4,686,584	+			-0.2
4,686,584	+			+0.7
4,686,585	-			-0.8
4,686,590	+			+0.7
4,686,590	+			-1.0
4,686,591	-			-0.0
4,686,591	-			-1.0
4,686,602	-			-2.2
4,686,602	-			-0.0
4,686,653	+			-0.4
4,686,653	+			-1.8
4,686,653	+			+1.9
4,686,654	-			-1.8
4,686,657	+			-0.3
4,686,658	-			+0.6
4,686,658	-			+2.1
4,686,732	-			+1.4
4,686,737	+			-1.0
4,686,737	+			-1.7
4,686,870	+	DZA65_RS21675	0.13	-2.9
4,686,870	+	DZA65_RS21675	0.13	-1.4
4,686,871	-	DZA65_RS21675	0.13	-1.6
4,686,874	-	DZA65_RS21675	0.13	+0.0
4,687,005	+	DZA65_RS21675	0.21	-0.1
4,687,005	+	DZA65_RS21675	0.21	-1.4
4,687,006	-	DZA65_RS21675	0.21	-0.4
4,687,006	-	DZA65_RS21675	0.21	-1.2
4,687,006	-	DZA65_RS21675	0.21	+1.2
4,687,034	-	DZA65_RS21675	0.22	-0.4
4,687,034	-	DZA65_RS21675	0.22	+0.1
4,687,037	+	DZA65_RS21675	0.23	-0.7
4,687,037	+	DZA65_RS21675	0.23	-1.2
4,687,038	-	DZA65_RS21675	0.23	+0.3
4,687,038	-	DZA65_RS21675	0.23	+2.1
4,687,038	-	DZA65_RS21675	0.23	+1.1
4,687,038	-	DZA65_RS21675	0.23	-0.8
4,687,068	+	DZA65_RS21675	0.24	-0.8
4,687,145	+	DZA65_RS21675	0.29	+0.8
4,687,146	-	DZA65_RS21675	0.29	+0.2
4,687,312	-	DZA65_RS21675	0.39	-0.1
4,687,387	-	DZA65_RS21675	0.43	+1.0
4,687,387	-	DZA65_RS21675	0.43	+0.3
4,687,463	+	DZA65_RS21675	0.48	+0.4
4,687,463	+	DZA65_RS21675	0.48	+0.9
4,687,463	+	DZA65_RS21675	0.48	+0.6
4,687,463	+	DZA65_RS21675	0.48	+0.3
4,687,464	-			+1.1
4,687,464	-	DZA65_RS21675	0.48	+1.3
4,687,464	-	DZA65_RS21675	0.48	+0.4
4,687,464	-	DZA65_RS21675	0.48	+0.9
4,687,464	-	DZA65_RS21675	0.48	+0.0
4,687,464	-	DZA65_RS21675	0.48	-0.8
4,687,716	+	DZA65_RS21675	0.63	+0.6
4,687,717	-	DZA65_RS21675	0.63	+0.3
4,687,759	-	DZA65_RS21675	0.65	+1.9
4,688,085	+	DZA65_RS21675	0.85	+0.3
4,688,086	-	DZA65_RS21675	0.85	-0.3
4,688,207	+			+1.4
4,688,207	+			-0.4
4,688,208	-			+0.6
4,688,208	-			-0.4
4,688,208	-			-0.3
4,688,208	-			+0.6
4,688,208	-			+0.3
4,688,208	-			-0.4
4,688,208	-			-1.3
4,688,229	+			-1.1
4,688,241	+			+0.3
4,688,241	+			+1.1
4,688,241	+			+0.1
4,688,241	+			-1.0
4,688,241	+			+1.3
4,688,241	+			+0.8
4,688,241	+			-0.9
4,688,242	-			+0.2
4,688,242	-			-1.4
4,688,242	-			+1.0
4,688,242	-			+0.2
4,688,242	-			-0.4
4,688,242	-			+0.2
4,688,242	-			+3.9
4,688,242	-			-1.1
4,688,242	-			-1.0
4,688,242	-			+0.6
4,688,242	-			-0.2
4,688,242	-			-0.6
4,688,242	-			+0.7
4,688,339	-			-1.5
4,688,392	+			+0.8
4,688,393	-			-1.0
4,688,411	+			-2.4
4,688,458	+			-0.4
4,688,461	-			-0.5
4,688,467	+			+0.6
4,688,478	-			-0.4
4,688,484	-			-0.3
4,688,510	-			+0.4
4,688,513	+			-0.5
4,688,514	-			-0.4
4,688,520	-			+1.0
4,688,523	-			+0.5
4,688,526	+			-1.6
4,688,527	-			-0.4
4,688,528	+			-0.2
4,688,529	-			-0.6
4,688,540	-			-1.8
4,688,602	+			+0.0
4,688,602	+			+1.3
4,688,602	+			+0.5
4,688,643	+			+1.6
4,688,643	+			+0.4
4,688,700	-			-0.9
4,688,735	+			-1.0
4,688,792	+			-0.7
4,688,793	-			+0.4
4,688,797	+			-0.5
4,688,797	+			-1.4
4,688,797	+			+2.4
4,688,798	-			+0.7
4,688,798	-			-0.2
4,688,798	-			+0.6
4,688,825	-			-1.3
4,688,828	+			-0.2
4,688,843	+			+0.1
4,688,844	-			-1.2
4,688,844	-			-0.7
4,688,844	-			+0.6
4,688,844	-			+0.2
4,688,847	+			+0.1
4,688,847	+			+0.8
4,688,847	+			+0.1
4,688,847	+			-0.6
4,688,918	-			+1.2
4,688,943	-	DZA65_RS21680	0.11	-0.6
4,688,943	-	DZA65_RS21680	0.11	-1.5
4,688,988	-	DZA65_RS21680	0.14	+0.2
4,689,034	+	DZA65_RS21680	0.16	+0.8
4,689,059	-	DZA65_RS21680	0.18	-0.1
4,689,177	-	DZA65_RS21680	0.25	+0.7
4,689,237	+	DZA65_RS21680	0.28	-0.1
4,689,268	-	DZA65_RS21680	0.30	-0.8
4,689,268	-	DZA65_RS21680	0.30	+0.5
4,689,268	-	DZA65_RS21680	0.30	+0.4
4,689,331	+	DZA65_RS21680	0.34	-2.4
4,689,332	-	DZA65_RS21680	0.34	-0.2
4,689,332	-	DZA65_RS21680	0.34	-0.0

Or see this region's nucleotide sequence