Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21505

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,650,942	+		DZA65_RS21495	0.60	+2.3
4,650,942	+		DZA65_RS21495	0.60	+2.0
4,650,942	+		DZA65_RS21495	0.60	+0.4
4,650,942	+		DZA65_RS21495	0.60	-0.8
4,650,942	+		DZA65_RS21495	0.60	+0.1
4,650,942	+		DZA65_RS21495	0.60	+0.3
4,650,943	-		DZA65_RS21495	0.60	+1.0
4,650,943	-		DZA65_RS21495	0.60	+0.0
4,650,943	-		DZA65_RS21495	0.60	+1.3
4,650,943	-		DZA65_RS21495	0.60	-0.3
4,651,212	+		DZA65_RS21495	0.89	-0.6
4,651,213	-		DZA65_RS21495	0.89	+1.3
4,651,225	+				+1.1
4,651,236	+				-0.7
4,651,340	+				+0.8
4,651,341	-				-0.6
4,651,349	+				-0.1
4,651,350	-				-0.0
4,651,350	-				+2.0
4,651,350	-				+0.9
4,651,350	-				-0.9
4,651,350	-				+0.2
4,651,385	-				-1.0
4,651,394	-				-2.9
4,651,413	+				+0.6
4,651,413	+				+0.5
4,651,413	+				+1.0
4,651,413	+				+0.1
4,651,413	+				-0.2
4,651,413	+				-0.4
4,651,414	-				-0.3
4,651,414	-				+0.6
4,651,414	-				+1.1
4,651,420	-				-0.1
4,651,420	-				-0.1
4,651,479	+		DZA65_RS21500	0.15	+0.7
4,651,479	+		DZA65_RS21500	0.15	+0.0
4,651,480	-		DZA65_RS21500	0.15	-0.5
4,651,503	+		DZA65_RS21500	0.19	-0.5
4,651,504	-		DZA65_RS21500	0.20	-0.4
4,651,504	-		DZA65_RS21500	0.20	+0.5
4,651,504	-		DZA65_RS21500	0.20	-0.4
4,651,514	+		DZA65_RS21500	0.21	-0.0
4,651,514	+		DZA65_RS21500	0.21	-2.0
4,651,514	+		DZA65_RS21500	0.21	-1.6
4,651,514	+		DZA65_RS21500	0.21	+0.6
4,651,515	-		DZA65_RS21500	0.22	-1.4
4,651,515	-		DZA65_RS21500	0.22	+0.4
4,651,515	-		DZA65_RS21500	0.22	+0.0
4,651,515	-		DZA65_RS21500	0.22	-1.0
4,651,515	-		DZA65_RS21500	0.22	+2.3
4,651,784	+		DZA65_RS21500	0.72	-1.0
4,651,819	+		DZA65_RS21500	0.79	-0.9
4,651,827	+		DZA65_RS21500	0.80	+0.9
4,651,828	-		DZA65_RS21500	0.81	-0.8
4,651,828	-		DZA65_RS21500	0.81	+0.2
4,651,861	+		DZA65_RS21500	0.87	+1.9
4,651,873	+		DZA65_RS21500	0.89	-0.2
4,651,873	+		DZA65_RS21500	0.89	+0.1
4,651,873	+		DZA65_RS21500	0.89	-0.2
4,651,874	-		DZA65_RS21500	0.89	-0.3
4,651,874	-		DZA65_RS21500	0.89	+0.1
4,651,883	+				+0.3
4,651,883	+				+0.8
4,651,883	+				+0.7
4,651,883	+				+0.3
4,651,883	+				-0.2
4,651,883	+				+0.9
4,651,883	+				-0.8
4,651,884	-				-1.0
4,651,884	-				-1.2
4,651,884	-				+0.4
4,651,884	-				+0.6
4,651,884	-				-0.1
4,651,884	-				-0.6
4,651,884	-				-1.4
4,651,884	-				-0.8
4,651,884	-				+0.6
4,651,884	-				+1.1
4,651,914	+				+0.8
4,651,915	-				+0.4
4,651,928	+				+0.9
4,651,929	-				-3.0
4,651,939	+				+1.1
4,651,939	+				+0.6
4,651,939	+				-0.4
4,651,939	+				+1.0
4,651,939	+				+1.1
4,651,939	+				-0.8
4,651,940	-				+1.6
4,651,940	-				-2.4
4,651,940	-				-0.4
4,651,940	-				+0.2
4,651,940	-				+0.7
4,651,940	-				-0.0
4,651,940	-				+1.6
4,651,940	-				-1.0
4,651,940	-				-0.2
4,651,940	-				+0.6
4,651,940	-				-0.6
4,651,965	+				-0.4
4,651,965	+				+0.3
4,651,965	+				+1.4
4,651,966	-				-1.0
4,651,966	-				-1.6
4,651,981	+				+1.0
4,651,981	+				+1.0
4,651,981	+				-0.1
4,651,981	+				-0.2
4,651,981	+				+3.0
4,651,981	+				+0.4
4,651,981	+				+0.6
4,651,982	-				-1.3
4,651,982	-				+1.0
4,651,982	-				-2.5
4,651,985	+				+0.4
4,651,985	+				+1.0
4,651,985	+				+0.2
4,651,985	+				-0.0
4,651,985	+				-0.9
4,651,985	+				-2.2
4,651,985	+				-1.3
4,651,985	+				-1.0
4,651,985	+				-0.7
4,651,985	+				-2.8
4,651,985	+				-2.0
4,651,985	+				+0.9
4,651,985	+				-1.8
4,651,985	+				+0.5
4,651,985	+				+1.6
4,651,985	+				-0.0
4,651,985	+				+1.1
4,651,985	+				+1.0
4,651,985	+				+0.6
4,651,985	+				-0.5
4,651,986	-				+1.0
4,651,986	-				-0.6
4,651,986	-				-1.9
4,651,986	-				-0.2
4,651,986	-				+0.6
4,651,986	-				-0.8
4,651,986	-				+0.1
4,651,986	-				+0.7
4,651,986	-				-0.4
4,651,986	-				-0.1
4,651,986	-				+0.2
4,651,986	-				+0.8
4,652,211	-		DZA65_RS21505	0.20	+0.1
4,652,236	+		DZA65_RS21505	0.22	+1.8
4,652,610	+		DZA65_RS21505	0.50	-0.4
4,652,610	+		DZA65_RS21505	0.50	+0.6
4,652,611	-		DZA65_RS21505	0.50	+1.9
4,652,611	-		DZA65_RS21505	0.50	-0.2
4,652,656	+		DZA65_RS21505	0.54	+1.1
4,652,656	+		DZA65_RS21505	0.54	+0.4
4,652,656	+		DZA65_RS21505	0.54	+0.8
4,652,656	+		DZA65_RS21505	0.54	+0.1
4,652,656	+		DZA65_RS21505	0.54	-1.8
4,652,657	-		DZA65_RS21505	0.54	+0.3
4,652,657	-		DZA65_RS21505	0.54	-1.8
4,652,657	-		DZA65_RS21505	0.54	+1.6
4,652,657	-		DZA65_RS21505	0.54	-0.2
4,652,657	-		DZA65_RS21505	0.54	+0.1
4,652,657	-		DZA65_RS21505	0.54	+0.3
4,652,804	-		DZA65_RS21505	0.65	-1.4
4,652,804	-		DZA65_RS21505	0.65	-2.0
4,652,804	-		DZA65_RS21505	0.65	+0.9
4,652,804	-		DZA65_RS21505	0.65	-0.8
4,652,804	-		DZA65_RS21505	0.65	-0.4
4,652,965	+		DZA65_RS21505	0.77	-0.2
4,652,965	+		DZA65_RS21505	0.77	+0.3
4,652,965	+		DZA65_RS21505	0.77	+1.6
4,652,965	+		DZA65_RS21505	0.77	+0.1
4,652,966	-		DZA65_RS21505	0.77	+0.6
4,652,966	-		DZA65_RS21505	0.77	+0.1
4,652,966	-		DZA65_RS21505	0.77	+1.1
4,652,966	-		DZA65_RS21505	0.77	-0.0
4,652,966	-		DZA65_RS21505	0.77	-0.1
4,652,966	-		DZA65_RS21505	0.77	+0.5
4,653,002	+		DZA65_RS21505	0.80	+0.6
4,653,002	+		DZA65_RS21505	0.80	+0.3
4,653,002	+		DZA65_RS21505	0.80	+0.6
4,653,003	-		DZA65_RS21505	0.80	+0.5
4,653,003	-		DZA65_RS21505	0.80	+2.1
4,653,127	+		DZA65_RS21505	0.89	-1.1
4,653,127	+		DZA65_RS21505	0.89	+1.0
4,653,127	+		DZA65_RS21505	0.89	-0.2
4,653,127	+		DZA65_RS21505	0.89	+0.8
4,653,127	+		DZA65_RS21505	0.89	+0.9
4,653,127	+		DZA65_RS21505	0.89	-1.4
4,653,128	-		DZA65_RS21505	0.89	+2.1
4,653,128	-		DZA65_RS21505	0.89	-0.6
4,653,156	+				+1.0
4,653,156	+				-0.4
4,653,156	+				-0.2
4,653,156	+				+1.6
4,653,157	-				-1.3
4,653,157	-				-1.0
4,653,157	-				+1.6
4,653,162	-				-0.8
4,653,162	-				+0.0
4,653,209	+				-0.9
4,653,209	+				-0.3
4,653,209	+				+0.8
4,653,210	-				+1.0
4,653,210	-				-2.0
4,653,210	-				+1.0
4,653,210	-				-1.0
4,653,210	-				-1.5
4,653,210	-				+1.8
4,653,210	-				+1.0
4,653,214	-				+1.9
4,653,214	-				+0.1
4,653,214	-				+1.6
4,653,262	+				+0.8
4,653,263	-				-0.5
4,653,263	-				-0.8
4,653,267	+				-0.2
4,653,267	+				-0.4
4,653,267	+				-0.2
4,653,267	+				+0.3
4,653,267	+				+0.4
4,653,267	+				+1.0
4,653,267	+				+1.3
4,653,267	+				-0.5
4,653,267	+				+0.2
4,653,267	+				+0.3
4,653,267	+				-0.2
4,653,268	-				-0.9
4,653,268	-				-0.0
4,653,268	-				+2.1
4,653,268	-				+0.8
4,653,268	-				+0.4
4,653,268	-				+1.4
4,653,268	-				-0.4
4,653,268	-				-2.0
4,653,269	+				+0.1
4,653,269	+				+0.1
4,653,270	-				+1.3
4,653,270	-				+1.1
4,653,270	-				+1.5
4,653,336	+				+0.1
4,653,356	-				+0.6
4,653,356	-				-0.3
4,653,392	+				-0.3
4,653,393	-				-1.3
4,653,393	-				-1.4
4,653,395	+				+0.8
4,653,395	+				+0.6
4,653,396	-				-0.5
4,653,396	-				+0.8
4,653,396	-				+2.1
4,653,396	-				-0.1
4,653,396	-				-0.4
4,653,405	+				+0.7
4,653,446	+				-1.8
4,653,446	+				+1.0
4,653,446	+				-0.7
4,653,446	+				+1.0
4,653,446	+				+1.6
4,653,446	+				+0.9
4,653,446	+				-0.3
4,653,446	+				+0.6
4,653,447	-				-1.0
4,653,447	-				-2.1
4,653,447	-				-0.4
4,653,447	-				-2.4
4,653,447	-				+1.2
4,653,447	-				-0.3
4,653,447	-				-1.0
4,653,447	-				+1.3
4,653,447	-				+0.2
4,653,447	-				+1.9
4,653,447	-				-0.0
4,653,447	-				+0.6
4,653,447	-				-0.3
4,653,447	-				+0.6
4,653,447	-				+1.4
4,653,447	-				+0.1
4,653,627	+		DZA65_RS21510	0.22	+0.8
4,653,715	+		DZA65_RS21510	0.31	+0.2
4,653,715	+		DZA65_RS21510	0.31	-0.0
4,653,715	+		DZA65_RS21510	0.31	+0.7
4,653,715	+		DZA65_RS21510	0.31	+1.2
4,653,715	+		DZA65_RS21510	0.31	+0.3
4,653,715	+		DZA65_RS21510	0.31	+2.1
4,653,716	-		DZA65_RS21510	0.31	-0.1
4,653,716	-		DZA65_RS21510	0.31	+1.0
4,653,716	-		DZA65_RS21510	0.31	-2.2
4,653,719	+		DZA65_RS21510	0.32	-0.8
4,653,719	+		DZA65_RS21510	0.32	+1.1
4,653,719	+		DZA65_RS21510	0.32	+0.3
4,653,720	-		DZA65_RS21510	0.32	-0.4
4,653,720	-		DZA65_RS21510	0.32	+1.6
4,653,720	-		DZA65_RS21510	0.32	+0.1
4,653,720	-		DZA65_RS21510	0.32	-0.1
4,653,734	+		DZA65_RS21510	0.33	+0.5
4,653,848	+		DZA65_RS21510	0.46	+1.1
4,653,848	+		DZA65_RS21510	0.46	-0.3
4,653,848	+		DZA65_RS21510	0.46	+0.4
4,653,852	+		DZA65_RS21510	0.46	+0.2
4,653,852	+		DZA65_RS21510	0.46	-0.9
4,653,852	+		DZA65_RS21510	0.46	+0.3
4,653,852	+		DZA65_RS21510	0.46	+0.0
4,653,852	+		DZA65_RS21510	0.46	-0.4
4,653,852	+		DZA65_RS21510	0.46	-1.4
4,653,852	+		DZA65_RS21510	0.46	-0.2
4,653,852	+		DZA65_RS21510	0.46	-0.4
4,653,852	+		DZA65_RS21510	0.46	+1.2
4,653,852	+		DZA65_RS21510	0.46	-0.3
4,653,852	+		DZA65_RS21510	0.46	+0.3
4,653,852	+		DZA65_RS21510	0.46	-0.7
4,653,853	-		DZA65_RS21510	0.46	+0.3
4,653,853	-		DZA65_RS21510	0.46	+1.8
4,653,853	-		DZA65_RS21510	0.46	+0.2
4,653,853	-		DZA65_RS21510	0.46	+0.2
4,653,853	-		DZA65_RS21510	0.46	+0.2
4,653,853	-		DZA65_RS21510	0.46	+0.2
4,653,853	-		DZA65_RS21510	0.46	+0.4
4,653,854	+		DZA65_RS21510	0.46	+0.9
4,653,879	+		DZA65_RS21510	0.49	-0.8
4,653,879	+		DZA65_RS21510	0.49	+0.3
4,653,879	+		DZA65_RS21510	0.49	-0.1
4,653,879	+		DZA65_RS21510	0.49	+1.7
4,653,879	+		DZA65_RS21510	0.49	+1.1
4,653,879	+		DZA65_RS21510	0.49	+1.4
4,653,879	+		DZA65_RS21510	0.49	-0.4
4,653,879	+		DZA65_RS21510	0.49	+0.0
4,653,879	+		DZA65_RS21510	0.49	+0.1
4,653,879	+		DZA65_RS21510	0.49	+0.3
4,653,880	-		DZA65_RS21510	0.49	-1.4
4,653,880	-		DZA65_RS21510	0.49	-1.1
4,653,880	-		DZA65_RS21510	0.49	+0.4
4,653,880	-		DZA65_RS21510	0.49	-0.4
4,653,942	+				-0.4
4,653,943	-		DZA65_RS21510	0.56	+0.6
4,653,945	+		DZA65_RS21510	0.56	-0.7
4,653,945	+		DZA65_RS21510	0.56	-0.1
4,653,945	+		DZA65_RS21510	0.56	+1.3
4,653,945	+		DZA65_RS21510	0.56	-0.4
4,653,946	-		DZA65_RS21510	0.56	+0.1
4,653,946	-		DZA65_RS21510	0.56	-0.9
4,653,946	-		DZA65_RS21510	0.56	-0.4
4,653,946	-		DZA65_RS21510	0.56	+1.6
4,653,946	-		DZA65_RS21510	0.56	+2.1
4,654,118	+		DZA65_RS21510	0.75	-0.7
4,654,118	+		DZA65_RS21510	0.75	+2.1
4,654,119	-		DZA65_RS21510	0.75	-1.6
4,654,119	-		DZA65_RS21510	0.75	+1.9
4,654,171	-		DZA65_RS21510	0.81	-0.1
4,654,171	-		DZA65_RS21510	0.81	+0.0
4,654,171	-		DZA65_RS21510	0.81	+0.6
4,654,171	-		DZA65_RS21510	0.81	-1.4
4,654,178	+		DZA65_RS21510	0.82	-2.9
4,654,178	+		DZA65_RS21510	0.82	-0.4
4,654,178	+		DZA65_RS21510	0.82	-0.2
4,654,178	+		DZA65_RS21510	0.82	-1.0
4,654,178	+		DZA65_RS21510	0.82	-2.2
4,654,179	-		DZA65_RS21510	0.82	-0.1
4,654,179	-		DZA65_RS21510	0.82	-0.2
4,654,179	-		DZA65_RS21510	0.82	-0.6
4,654,179	-		DZA65_RS21510	0.82	+0.0
4,654,179	-		DZA65_RS21510	0.82	+0.2
4,654,199	+		DZA65_RS21510	0.84	+1.3
4,654,199	+		DZA65_RS21510	0.84	+0.9
4,654,199	+		DZA65_RS21510	0.84	-1.4
4,654,199	+		DZA65_RS21510	0.84	+0.6