Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21450

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS21445 and DZA65_RS21450 are separated by 134 nucleotidesDZA65_RS21450 and DZA65_RS21455 are separated by 161 nucleotides DZA65_RS21445: DZA65_RS21445 - Si-specific NAD(P)(+) transhydrogenase, at 4,637,133 to 4,638,533 _RS21445 DZA65_RS21450: DZA65_RS21450 - DNA-binding transcriptional regulator OxyR, at 4,638,668 to 4,639,585 _RS21450 DZA65_RS21455: DZA65_RS21455 - glutathione peroxidase, at 4,639,747 to 4,640,478 _RS21455 Position (kb) 4638 4639 4640Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 4637.677 kb on - strand, within DZA65_RS21445at 4637.805 kb on + strand, within DZA65_RS21445at 4638.100 kb on - strand, within DZA65_RS21445at 4638.168 kb on - strand, within DZA65_RS21445at 4638.183 kb on + strand, within DZA65_RS21445at 4638.183 kb on + strand, within DZA65_RS21445at 4638.184 kb on - strand, within DZA65_RS21445at 4638.184 kb on - strand, within DZA65_RS21445at 4638.188 kb on + strand, within DZA65_RS21445at 4638.438 kb on - strandat 4638.440 kb on + strandat 4638.440 kb on + strandat 4638.441 kb on - strandat 4638.441 kb on - strandat 4638.441 kb on - strandat 4638.567 kb on - strandat 4638.588 kb on + strandat 4638.588 kb on + strandat 4638.644 kb on + strandat 4638.648 kb on + strandat 4638.652 kb on + strandat 4638.669 kb on + strandat 4638.771 kb on + strand, within DZA65_RS21450at 4638.772 kb on - strand, within DZA65_RS21450at 4638.772 kb on - strand, within DZA65_RS21450at 4638.787 kb on + strand, within DZA65_RS21450at 4638.787 kb on + strand, within DZA65_RS21450at 4638.787 kb on + strand, within DZA65_RS21450at 4638.788 kb on - strand, within DZA65_RS21450at 4638.788 kb on - strand, within DZA65_RS21450at 4638.788 kb on - strand, within DZA65_RS21450at 4638.807 kb on + strand, within DZA65_RS21450at 4638.807 kb on + strand, within DZA65_RS21450at 4638.807 kb on + strand, within DZA65_RS21450at 4638.808 kb on - strand, within DZA65_RS21450at 4638.808 kb on - strand, within DZA65_RS21450at 4638.819 kb on + strand, within DZA65_RS21450at 4638.819 kb on + strand, within DZA65_RS21450at 4638.819 kb on + strand, within DZA65_RS21450at 4638.820 kb on - strand, within DZA65_RS21450at 4638.820 kb on - strand, within DZA65_RS21450at 4638.820 kb on - strand, within DZA65_RS21450at 4638.820 kb on - strand, within DZA65_RS21450at 4638.874 kb on + strand, within DZA65_RS21450at 4638.874 kb on + strand, within DZA65_RS21450at 4638.877 kb on + strand, within DZA65_RS21450at 4638.877 kb on + strand, within DZA65_RS21450at 4638.877 kb on + strand, within DZA65_RS21450at 4638.878 kb on - strand, within DZA65_RS21450at 4638.878 kb on - strand, within DZA65_RS21450at 4638.893 kb on + strand, within DZA65_RS21450at 4639.077 kb on + strand, within DZA65_RS21450at 4639.077 kb on + strand, within DZA65_RS21450at 4639.077 kb on + strand, within DZA65_RS21450at 4639.077 kb on + strand, within DZA65_RS21450at 4639.077 kb on + strand, within DZA65_RS21450at 4639.078 kb on - strand, within DZA65_RS21450at 4639.218 kb on + strand, within DZA65_RS21450at 4639.218 kb on + strand, within DZA65_RS21450at 4639.218 kb on + strand, within DZA65_RS21450at 4639.218 kb on + strand, within DZA65_RS21450at 4639.218 kb on + strand, within DZA65_RS21450at 4639.218 kb on + strand, within DZA65_RS21450at 4639.218 kb on + strand, within DZA65_RS21450at 4639.218 kb on + strand, within DZA65_RS21450at 4639.219 kb on - strand, within DZA65_RS21450at 4639.219 kb on - strand, within DZA65_RS21450at 4639.219 kb on - strand, within DZA65_RS21450at 4639.219 kb on - strand, within DZA65_RS21450at 4639.240 kb on + strand, within DZA65_RS21450at 4639.240 kb on + strand, within DZA65_RS21450at 4639.240 kb on + strand, within DZA65_RS21450at 4639.240 kb on + strand, within DZA65_RS21450at 4639.241 kb on - strand, within DZA65_RS21450at 4639.241 kb on - strand, within DZA65_RS21450at 4639.275 kb on + strand, within DZA65_RS21450at 4639.276 kb on - strand, within DZA65_RS21450at 4639.276 kb on - strand, within DZA65_RS21450at 4639.304 kb on - strand, within DZA65_RS21450at 4639.568 kb on + strandat 4639.568 kb on + strandat 4639.568 kb on + strandat 4639.579 kb on + strandat 4639.579 kb on + strandat 4639.580 kb on - strandat 4639.580 kb on - strandat 4639.580 kb on - strandat 4639.622 kb on - strandat 4639.625 kb on + strandat 4639.626 kb on - strandat 4639.662 kb on + strandat 4639.669 kb on + strandat 4639.731 kb on + strandat 4639.731 kb on + strandat 4639.754 kb on + strandat 4639.754 kb on + strandat 4639.754 kb on + strandat 4639.755 kb on - strandat 4639.755 kb on - strandat 4639.755 kb on - strandat 4639.755 kb on - strandat 4639.755 kb on - strandat 4639.755 kb on - strandat 4639.784 kb on + strandat 4639.884 kb on + strand, within DZA65_RS21455at 4639.884 kb on + strand, within DZA65_RS21455at 4639.885 kb on - strand, within DZA65_RS21455at 4639.885 kb on - strand, within DZA65_RS21455at 4639.918 kb on + strand, within DZA65_RS21455at 4639.918 kb on + strand, within DZA65_RS21455at 4639.918 kb on + strand, within DZA65_RS21455at 4639.918 kb on + strand, within DZA65_RS21455at 4639.918 kb on + strand, within DZA65_RS21455at 4639.918 kb on + strandat 4639.918 kb on + strand, within DZA65_RS21455at 4639.918 kb on + strand, within DZA65_RS21455at 4639.919 kb on - strand, within DZA65_RS21455at 4639.919 kb on - strand, within DZA65_RS21455at 4639.919 kb on - strand, within DZA65_RS21455at 4639.919 kb on - strand, within DZA65_RS21455at 4639.919 kb on - strand, within DZA65_RS21455at 4639.919 kb on - strand, within DZA65_RS21455at 4639.919 kb on - strand, within DZA65_RS21455at 4639.920 kb on + strand, within DZA65_RS21455at 4639.967 kb on + strand, within DZA65_RS21455at 4639.968 kb on - strand, within DZA65_RS21455at 4639.986 kb on + strand, within DZA65_RS21455at 4639.986 kb on + strand, within DZA65_RS21455at 4639.986 kb on + strand, within DZA65_RS21455at 4639.986 kb on + strand, within DZA65_RS21455at 4640.034 kb on + strand, within DZA65_RS21455at 4640.034 kb on + strand, within DZA65_RS21455at 4640.034 kb on + strand, within DZA65_RS21455at 4640.129 kb on - strand, within DZA65_RS21455at 4640.230 kb on + strand, within DZA65_RS21455at 4640.230 kb on + strand, within DZA65_RS21455at 4640.231 kb on - strand, within DZA65_RS21455at 4640.231 kb on - strand, within DZA65_RS21455at 4640.231 kb on - strand, within DZA65_RS21455at 4640.245 kb on + strand, within DZA65_RS21455at 4640.245 kb on + strand, within DZA65_RS21455at 4640.245 kb on + strand, within DZA65_RS21455at 4640.245 kb on + strand, within DZA65_RS21455at 4640.245 kb on + strand, within DZA65_RS21455at 4640.245 kb on + strand, within DZA65_RS21455at 4640.245 kb on + strand, within DZA65_RS21455at 4640.245 kb on + strand, within DZA65_RS21455at 4640.246 kb on - strand, within DZA65_RS21455at 4640.246 kb on - strand, within DZA65_RS21455at 4640.246 kb on - strand, within DZA65_RS21455at 4640.246 kb on - strand, within DZA65_RS21455at 4640.246 kb on - strand, within DZA65_RS21455at 4640.246 kb on - strand, within DZA65_RS21455at 4640.247 kb on + strand, within DZA65_RS21455at 4640.247 kb on + strand, within DZA65_RS21455at 4640.247 kb on + strand, within DZA65_RS21455at 4640.247 kb on + strand, within DZA65_RS21455at 4640.247 kb on + strand, within DZA65_RS21455at 4640.247 kb on + strand, within DZA65_RS21455at 4640.247 kb on + strand, within DZA65_RS21455at 4640.248 kb on - strand, within DZA65_RS21455at 4640.248 kb on - strand, within DZA65_RS21455at 4640.248 kb on - strand, within DZA65_RS21455at 4640.248 kb on - strand, within DZA65_RS21455at 4640.248 kb on - strand, within DZA65_RS21455at 4640.248 kb on - strand, within DZA65_RS21455at 4640.248 kb on - strand, within DZA65_RS21455at 4640.339 kb on - strand, within DZA65_RS21455at 4640.400 kb on + strand, within DZA65_RS21455at 4640.400 kb on + strand, within DZA65_RS21455at 4640.401 kb on - strand, within DZA65_RS21455at 4640.401 kb on - strandat 4640.417 kb on + strandat 4640.417 kb on + strandat 4640.417 kb on + strandat 4640.417 kb on + strandat 4640.417 kb on + strandat 4640.418 kb on - strandat 4640.560 kb on - strandat 4640.560 kb on - strandat 4640.560 kb on - strandat 4640.560 kb on - strandat 4640.560 kb on - strandat 4640.566 kb on - strandat 4640.580 kb on + strandat 4640.580 kb on + strandat 4640.581 kb on - strandat 4640.581 kb on - strandat 4640.581 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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4,637,677 - DZA65_RS21445 0.39 +0.6
4,637,805 + DZA65_RS21445 0.48 -0.3
4,638,100 - DZA65_RS21445 0.69 -0.8
4,638,168 - DZA65_RS21445 0.74 +0.6
4,638,183 + DZA65_RS21445 0.75 +0.6
4,638,183 + DZA65_RS21445 0.75 +1.4
4,638,184 - DZA65_RS21445 0.75 +0.8
4,638,184 - DZA65_RS21445 0.75 -1.2
4,638,188 + DZA65_RS21445 0.75 +1.6
4,638,438 - -0.2
4,638,440 + -0.8
4,638,440 + +2.6
4,638,441 - +0.5
4,638,441 - -1.0
4,638,441 - +1.1
4,638,567 - -0.4
4,638,588 + -0.4
4,638,588 + +0.6
4,638,644 + +1.2
4,638,648 + +1.1
4,638,652 + +0.8
4,638,669 + -1.4
4,638,771 + DZA65_RS21450 0.11 -3.1
4,638,772 - DZA65_RS21450 0.11 -2.2
4,638,772 - DZA65_RS21450 0.11 -2.8
4,638,787 + DZA65_RS21450 0.13 -3.3
4,638,787 + DZA65_RS21450 0.13 +0.0
4,638,787 + DZA65_RS21450 0.13 -2.9
4,638,788 - DZA65_RS21450 0.13 -3.0
4,638,788 - DZA65_RS21450 0.13 -1.6
4,638,788 - DZA65_RS21450 0.13 -0.2
4,638,807 + DZA65_RS21450 0.15 -1.8
4,638,807 + DZA65_RS21450 0.15 -1.8
4,638,807 + DZA65_RS21450 0.15 +2.0
4,638,808 - DZA65_RS21450 0.15 -2.8
4,638,808 - DZA65_RS21450 0.15 -2.8
4,638,819 + DZA65_RS21450 0.16 -0.7
4,638,819 + DZA65_RS21450 0.16 -3.5
4,638,819 + DZA65_RS21450 0.16 -2.9
4,638,820 - DZA65_RS21450 0.17 -1.9
4,638,820 - DZA65_RS21450 0.17 -1.4
4,638,820 - DZA65_RS21450 0.17 -0.3
4,638,820 - DZA65_RS21450 0.17 -3.0
4,638,874 + DZA65_RS21450 0.22 +0.1
4,638,874 + DZA65_RS21450 0.22 -5.0
4,638,877 + DZA65_RS21450 0.23 -1.0
4,638,877 + DZA65_RS21450 0.23 -3.1
4,638,877 + DZA65_RS21450 0.23 -4.1
4,638,878 - DZA65_RS21450 0.23 -1.6
4,638,878 - DZA65_RS21450 0.23 -1.0
4,638,893 + DZA65_RS21450 0.25 -1.8
4,639,077 + DZA65_RS21450 0.45 -1.3
4,639,077 + DZA65_RS21450 0.45 +0.3
4,639,077 + DZA65_RS21450 0.45 -0.4
4,639,077 + DZA65_RS21450 0.45 -1.8
4,639,077 + DZA65_RS21450 0.45 -5.0
4,639,078 - DZA65_RS21450 0.45 +0.6
4,639,218 + DZA65_RS21450 0.60 -2.4
4,639,218 + DZA65_RS21450 0.60 -3.9
4,639,218 + DZA65_RS21450 0.60 -2.1
4,639,218 + DZA65_RS21450 0.60 -1.0
4,639,218 + DZA65_RS21450 0.60 -1.8
4,639,218 + DZA65_RS21450 0.60 -2.4
4,639,218 + DZA65_RS21450 0.60 +0.6
4,639,218 + DZA65_RS21450 0.60 -2.0
4,639,219 - DZA65_RS21450 0.60 -1.8
4,639,219 - DZA65_RS21450 0.60 -2.4
4,639,219 - DZA65_RS21450 0.60 +0.6
4,639,219 - DZA65_RS21450 0.60 -2.4
4,639,240 + DZA65_RS21450 0.62 -0.7
4,639,240 + DZA65_RS21450 0.62 -3.2
4,639,240 + DZA65_RS21450 0.62 -3.2
4,639,240 + DZA65_RS21450 0.62 -1.0
4,639,241 - DZA65_RS21450 0.62 -1.8
4,639,241 - DZA65_RS21450 0.62 -2.0
4,639,275 + DZA65_RS21450 0.66 -4.6
4,639,276 - DZA65_RS21450 0.66 -2.4
4,639,276 - DZA65_RS21450 0.66 -2.0
4,639,304 - DZA65_RS21450 0.69 -2.9
4,639,568 + -1.1
4,639,568 + -0.4
4,639,568 + -2.2
4,639,579 + -1.4
4,639,579 + -1.0
4,639,580 - -3.2
4,639,580 - -2.6
4,639,580 - -3.3
4,639,622 - -0.3
4,639,625 + -0.4
4,639,626 - -0.8
4,639,662 + +1.0
4,639,669 + -1.3
4,639,731 + -1.8
4,639,731 + -0.8
4,639,754 + +1.1
4,639,754 + -0.4
4,639,754 + -0.3
4,639,755 - +0.1
4,639,755 - -2.6
4,639,755 - -0.3
4,639,755 - +0.9
4,639,755 - -1.3
4,639,755 - +1.3
4,639,784 + -1.1
4,639,884 + DZA65_RS21455 0.19 -0.4
4,639,884 + DZA65_RS21455 0.19 +1.0
4,639,885 - DZA65_RS21455 0.19 +0.5
4,639,885 - DZA65_RS21455 0.19 -1.0
4,639,918 + DZA65_RS21455 0.23 -0.4
4,639,918 + DZA65_RS21455 0.23 +0.4
4,639,918 + DZA65_RS21455 0.23 -1.4
4,639,918 + DZA65_RS21455 0.23 +0.3
4,639,918 + DZA65_RS21455 0.23 -1.1
4,639,918 + +1.0
4,639,918 + DZA65_RS21455 0.23 +0.4
4,639,918 + DZA65_RS21455 0.23 -0.1
4,639,919 - DZA65_RS21455 0.23 +0.1
4,639,919 - DZA65_RS21455 0.23 -1.3
4,639,919 - DZA65_RS21455 0.23 +0.1
4,639,919 - DZA65_RS21455 0.23 +0.9
4,639,919 - DZA65_RS21455 0.23 -0.7
4,639,919 - DZA65_RS21455 0.23 -0.8
4,639,919 - DZA65_RS21455 0.23 -0.9
4,639,920 + DZA65_RS21455 0.24 +0.2
4,639,967 + DZA65_RS21455 0.30 +1.0
4,639,968 - DZA65_RS21455 0.30 -0.8
4,639,986 + DZA65_RS21455 0.33 +0.6
4,639,986 + DZA65_RS21455 0.33 +0.6
4,639,986 + DZA65_RS21455 0.33 -0.0
4,639,986 + DZA65_RS21455 0.33 +1.6
4,640,034 + DZA65_RS21455 0.39 +0.3
4,640,034 + DZA65_RS21455 0.39 +1.3
4,640,034 + DZA65_RS21455 0.39 -0.1
4,640,129 - DZA65_RS21455 0.52 -0.1
4,640,230 + DZA65_RS21455 0.66 +0.3
4,640,230 + DZA65_RS21455 0.66 -2.0
4,640,231 - DZA65_RS21455 0.66 +0.8
4,640,231 - DZA65_RS21455 0.66 -0.8
4,640,231 - DZA65_RS21455 0.66 +0.6
4,640,245 + DZA65_RS21455 0.68 +1.2
4,640,245 + DZA65_RS21455 0.68 -0.4
4,640,245 + DZA65_RS21455 0.68 +0.6
4,640,245 + DZA65_RS21455 0.68 +0.3
4,640,245 + DZA65_RS21455 0.68 +0.8
4,640,245 + DZA65_RS21455 0.68 +0.6
4,640,245 + DZA65_RS21455 0.68 +0.8
4,640,245 + DZA65_RS21455 0.68 -0.3
4,640,246 - DZA65_RS21455 0.68 +0.4
4,640,246 - DZA65_RS21455 0.68 -0.0
4,640,246 - DZA65_RS21455 0.68 +0.3
4,640,246 - DZA65_RS21455 0.68 +0.8
4,640,246 - DZA65_RS21455 0.68 -0.1
4,640,246 - DZA65_RS21455 0.68 +0.6
4,640,247 + DZA65_RS21455 0.68 +0.9
4,640,247 + DZA65_RS21455 0.68 +0.1
4,640,247 + DZA65_RS21455 0.68 -0.4
4,640,247 + DZA65_RS21455 0.68 -0.2
4,640,247 + DZA65_RS21455 0.68 -0.9
4,640,247 + DZA65_RS21455 0.68 -0.3
4,640,247 + DZA65_RS21455 0.68 -0.4
4,640,248 - DZA65_RS21455 0.68 +0.1
4,640,248 - DZA65_RS21455 0.68 +0.5
4,640,248 - DZA65_RS21455 0.68 +0.3
4,640,248 - DZA65_RS21455 0.68 +0.4
4,640,248 - DZA65_RS21455 0.68 +0.8
4,640,248 - DZA65_RS21455 0.68 -0.5
4,640,248 - DZA65_RS21455 0.68 +0.1
4,640,339 - DZA65_RS21455 0.81 +3.6
4,640,400 + DZA65_RS21455 0.89 +0.3
4,640,400 + DZA65_RS21455 0.89 +0.2
4,640,401 - DZA65_RS21455 0.89 -0.7
4,640,401 - +0.6
4,640,417 + -0.4
4,640,417 + +0.4
4,640,417 + +0.3
4,640,417 + +1.4
4,640,417 + +0.5
4,640,418 - -0.6
4,640,560 - +1.0
4,640,560 - +0.6
4,640,560 - -0.5
4,640,560 - +0.6
4,640,560 - +0.4
4,640,566 - -0.2
4,640,580 + -1.0
4,640,580 + -0.1
4,640,581 - +0.1
4,640,581 - -0.6
4,640,581 - -0.4

Or see this region's nucleotide sequence