Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21225

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,583,775	+		DZA65_RS21220	0.19	-2.3
4,583,776	-		DZA65_RS21220	0.19	+0.2
4,583,814	+		DZA65_RS21220	0.23	-0.2
4,583,814	+		DZA65_RS21220	0.23	+1.2
4,583,814	+		DZA65_RS21220	0.23	-1.5
4,583,814	+		DZA65_RS21220	0.23	+1.0
4,583,815	-		DZA65_RS21220	0.23	-0.2
4,583,815	-		DZA65_RS21220	0.23	+0.7
4,583,815	-		DZA65_RS21220	0.23	+1.7
4,583,815	-		DZA65_RS21220	0.23	+0.1
4,583,815	-		DZA65_RS21220	0.23	+0.1
4,583,815	-		DZA65_RS21220	0.23	-0.3
4,583,846	+		DZA65_RS21220	0.26	-0.3
4,583,879	+		DZA65_RS21220	0.29	-0.7
4,583,879	+		DZA65_RS21220	0.29	-0.2
4,583,879	+		DZA65_RS21220	0.29	-0.7
4,583,880	-		DZA65_RS21220	0.29	-0.3
4,583,953	+		DZA65_RS21220	0.36	+1.0
4,583,953	+		DZA65_RS21220	0.36	-0.0
4,583,953	+		DZA65_RS21220	0.36	+1.1
4,583,966	+		DZA65_RS21220	0.37	-0.8
4,583,966	+		DZA65_RS21220	0.37	+0.2
4,583,966	+		DZA65_RS21220	0.37	+0.8
4,583,966	+		DZA65_RS21220	0.37	-0.1
4,583,966	+		DZA65_RS21220	0.37	+0.5
4,583,966	+		DZA65_RS21220	0.37	+0.3
4,583,966	+				-0.5
4,583,966	+		DZA65_RS21220	0.37	-0.1
4,583,966	+		DZA65_RS21220	0.37	+0.2
4,583,966	+		DZA65_RS21220	0.37	+0.3
4,583,966	+		DZA65_RS21220	0.37	+0.0
4,583,966	+		DZA65_RS21220	0.37	-1.3
4,583,967	-		DZA65_RS21220	0.37	-1.0
4,583,967	-		DZA65_RS21220	0.37	+0.0
4,583,967	-		DZA65_RS21220	0.37	-0.5
4,583,967	-		DZA65_RS21220	0.37	+0.3
4,583,967	-		DZA65_RS21220	0.37	+0.5
4,583,967	-		DZA65_RS21220	0.37	-0.2
4,583,967	-		DZA65_RS21220	0.37	-0.8
4,583,967	-		DZA65_RS21220	0.37	-2.0
4,583,967	-		DZA65_RS21220	0.37	+0.8
4,583,967	-		DZA65_RS21220	0.37	-0.6
4,584,161	+		DZA65_RS21220	0.55	-2.8
4,584,161	+		DZA65_RS21220	0.55	+0.9
4,584,161	+		DZA65_RS21220	0.55	-2.3
4,584,162	-		DZA65_RS21220	0.55	-0.0
4,584,162	-		DZA65_RS21220	0.55	+0.7
4,584,162	-		DZA65_RS21220	0.55	+1.0
4,584,162	-		DZA65_RS21220	0.55	-0.8
4,584,203	+		DZA65_RS21220	0.59	-1.3
4,584,203	+		DZA65_RS21220	0.59	+1.0
4,584,203	+		DZA65_RS21220	0.59	-0.7
4,584,203	+		DZA65_RS21220	0.59	-0.1
4,584,203	+		DZA65_RS21220	0.59	-0.4
4,584,305	+		DZA65_RS21220	0.68	-0.8
4,584,306	-		DZA65_RS21220	0.68	-0.1
4,584,306	-		DZA65_RS21220	0.68	+0.2
4,584,306	-		DZA65_RS21220	0.68	-1.2
4,584,332	+		DZA65_RS21220	0.71	+0.3
4,584,333	-		DZA65_RS21220	0.71	+0.1
4,584,481	+		DZA65_RS21220	0.84	+1.2
4,584,481	+		DZA65_RS21220	0.84	+0.5
4,584,482	-		DZA65_RS21220	0.84	+0.5
4,584,529	+		DZA65_RS21220	0.89	+0.5
4,584,576	+				-2.3
4,584,618	+				+0.2
4,584,639	+				-2.5
4,584,639	+				+0.5
4,584,639	+				-2.0
4,584,639	+				+0.7
4,584,639	+				-0.9
4,584,639	+				-0.2
4,584,639	+				-0.1
4,584,639	+				-1.0
4,584,639	+				-0.6
4,584,639	+				-1.4
4,584,639	+				-0.6
4,584,639	+				+0.5
4,584,639	+				-0.2
4,584,639	+				-0.7
4,584,639	+				+1.2
4,584,639	+				-1.0
4,584,639	+				+1.1
4,584,639	+				+0.0
4,584,639	+				+0.4
4,584,639	+				+0.2
4,584,639	+				+0.5
4,584,639	+				-0.8
4,584,639	+				-0.3
4,584,639	+				+0.3
4,584,639	+				+0.5
4,584,639	+				+2.0
4,584,639	+				+1.8
4,584,639	+				+0.6
4,584,639	+				+1.5
4,584,639	+				+0.5
4,584,639	+				-0.6
4,584,639	+				+0.8
4,584,639	+				-0.3
4,584,639	+				-0.2
4,584,639	+				+0.1
4,584,639	+				-0.0
4,584,640	-				-0.2
4,584,640	-				-0.3
4,584,640	-				+0.8
4,584,640	-				+0.7
4,584,640	-				+1.8
4,584,640	-				+0.7
4,584,640	-				+0.5
4,584,640	-				+0.3
4,584,640	-				+0.7
4,584,640	-				-0.2
4,584,640	-				-1.3
4,584,640	-				-0.5
4,584,640	-				-0.6
4,584,640	-				-0.3
4,584,640	-				+0.5
4,584,640	-				+1.1
4,584,640	-				+1.2
4,584,640	-				-2.0
4,584,640	-				+0.6
4,584,640	-				+0.1
4,584,640	-				+0.5
4,584,640	-				-2.3
4,584,640	-				+0.7
4,584,665	-				+0.5
4,584,698	-				+0.3
4,584,706	+				-0.5
4,584,706	+				-1.6
4,584,706	+				-2.0
4,584,706	+				-0.0
4,584,707	-				-1.5
4,584,707	-				+0.5
4,584,707	-				-0.3
4,584,707	-				-0.6
4,584,707	-				+0.3
4,584,707	-				-0.6
4,584,707	-				+0.2
4,584,707	-				+1.5
4,584,707	-				+0.2
4,584,707	-				-0.4
4,584,707	-				+0.1
4,584,707	-				-0.4
4,584,718	+				+0.1
4,584,719	-				-0.4
4,584,719	-				-1.5
4,584,812	-		DZA65_RS21225	0.13	+1.2
4,584,812	-		DZA65_RS21225	0.13	-1.4
4,584,812	-		DZA65_RS21225	0.13	+0.1
4,584,812	-		DZA65_RS21225	0.13	-0.0
4,584,873	+		DZA65_RS21225	0.18	+1.4
4,584,873	+		DZA65_RS21225	0.18	+0.4
4,584,873	+		DZA65_RS21225	0.18	+0.6
4,585,044	-		DZA65_RS21225	0.32	+0.3
4,585,075	+		DZA65_RS21225	0.34	-1.5
4,585,076	-		DZA65_RS21225	0.34	+0.9
4,585,076	-		DZA65_RS21225	0.34	+1.3
4,585,162	+		DZA65_RS21225	0.41	+1.1
4,585,162	+		DZA65_RS21225	0.41	+1.0
4,585,162	+		DZA65_RS21225	0.41	-0.0
4,585,163	-		DZA65_RS21225	0.41	-0.0
4,585,163	-		DZA65_RS21225	0.41	-0.5
4,585,163	-		DZA65_RS21225	0.41	+0.9
4,585,163	-		DZA65_RS21225	0.41	-0.8
4,585,163	-		DZA65_RS21225	0.41	+0.1
4,585,163	-		DZA65_RS21225	0.41	-1.0
4,585,163	-		DZA65_RS21225	0.41	-1.0
4,585,196	-		DZA65_RS21225	0.44	+0.6
4,585,249	-		DZA65_RS21225	0.48	+1.0
4,585,300	-		DZA65_RS21225	0.52	+0.2
4,585,300	-		DZA65_RS21225	0.52	-0.6
4,585,369	-		DZA65_RS21225	0.58	-0.2
4,585,369	-		DZA65_RS21225	0.58	+0.1
4,585,384	+		DZA65_RS21225	0.59	-0.3
4,585,384	+		DZA65_RS21225	0.59	+0.2
4,585,384	+		DZA65_RS21225	0.59	-0.3
4,585,385	-		DZA65_RS21225	0.59	-1.8
4,585,385	-		DZA65_RS21225	0.59	+0.8
4,585,385	-		DZA65_RS21225	0.59	+0.1
4,585,556	-		DZA65_RS21225	0.73	+0.2
4,585,713	+		DZA65_RS21225	0.85	-1.3
4,585,771	+		DZA65_RS21225	0.90	-0.0
4,585,826	+				-0.4
4,585,826	+				-0.0
4,585,826	+				-0.6
4,585,959	+				+0.5
4,585,959	+				-0.4
4,585,959	+				+2.3
4,585,959	+				-0.5
4,585,959	+				+0.5
4,585,960	-				-2.6
4,585,960	-				+0.0
4,585,960	-				-1.5
4,585,960	-				-0.2
4,585,960	-				-1.5
4,586,065	+		DZA65_RS21230	0.15	+0.3
4,586,065	+		DZA65_RS21230	0.15	-0.7
4,586,065	+		DZA65_RS21230	0.15	+0.5
4,586,065	+		DZA65_RS21230	0.15	+0.5
4,586,066	-		DZA65_RS21230	0.15	+2.0
4,586,066	-				+1.5
4,586,066	-		DZA65_RS21230	0.15	+0.9
4,586,066	-		DZA65_RS21230	0.15	-0.3
4,586,066	-		DZA65_RS21230	0.15	+0.5
4,586,066	-		DZA65_RS21230	0.15	-0.1
4,586,066	-		DZA65_RS21230	0.15	+1.5
4,586,066	-		DZA65_RS21230	0.15	-0.4
4,586,066	-		DZA65_RS21230	0.15	+0.5
4,586,067	+		DZA65_RS21230	0.15	+0.8
4,586,067	+		DZA65_RS21230	0.15	-0.0
4,586,067	+		DZA65_RS21230	0.15	-1.6
4,586,067	+		DZA65_RS21230	0.15	-0.2
4,586,067	+		DZA65_RS21230	0.15	-0.0
4,586,068	-		DZA65_RS21230	0.15	-1.5
4,586,068	-		DZA65_RS21230	0.15	+0.5
4,586,068	-		DZA65_RS21230	0.15	+0.4
4,586,068	-		DZA65_RS21230	0.15	-1.5
4,586,068	-		DZA65_RS21230	0.15	-1.5
4,586,101	+		DZA65_RS21230	0.18	-1.3
4,586,102	-		DZA65_RS21230	0.18	-0.0
4,586,102	-		DZA65_RS21230	0.18	-0.4
4,586,238	+		DZA65_RS21230	0.30	+0.5
4,586,238	+		DZA65_RS21230	0.30	+0.2
4,586,238	+		DZA65_RS21230	0.30	-1.0
4,586,238	+		DZA65_RS21230	0.30	+1.0
4,586,239	-		DZA65_RS21230	0.30	-0.5
4,586,239	-		DZA65_RS21230	0.30	+0.1
4,586,239	-		DZA65_RS21230	0.30	-0.2
4,586,249	+		DZA65_RS21230	0.31	-0.3
4,586,249	+		DZA65_RS21230	0.31	-1.0
4,586,250	-		DZA65_RS21230	0.31	-0.2
4,586,304	+		DZA65_RS21230	0.36	-0.1
4,586,304	+		DZA65_RS21230	0.36	+0.3
4,586,305	-		DZA65_RS21230	0.36	-0.3
4,586,305	-		DZA65_RS21230	0.36	+0.1
4,586,331	+		DZA65_RS21230	0.38	-0.2
4,586,331	+		DZA65_RS21230	0.38	-0.4
4,586,332	-		DZA65_RS21230	0.38	+1.0
4,586,332	-		DZA65_RS21230	0.38	-0.5
4,586,332	-		DZA65_RS21230	0.38	+0.1
4,586,332	-		DZA65_RS21230	0.38	-0.1
4,586,332	-		DZA65_RS21230	0.38	-0.5
4,586,358	+		DZA65_RS21230	0.41	+0.6
4,586,358	+		DZA65_RS21230	0.41	-0.9
4,586,358	+		DZA65_RS21230	0.41	+0.3
4,586,358	+		DZA65_RS21230	0.41	-0.9
4,586,358	+		DZA65_RS21230	0.41	-0.7
4,586,358	+		DZA65_RS21230	0.41	-0.5
4,586,358	+		DZA65_RS21230	0.41	-0.0
4,586,358	+		DZA65_RS21230	0.41	-1.0
4,586,358	+		DZA65_RS21230	0.41	-0.0
4,586,358	+		DZA65_RS21230	0.41	-0.0
4,586,358	+		DZA65_RS21230	0.41	-0.3
4,586,359	-		DZA65_RS21230	0.41	-1.5
4,586,359	-		DZA65_RS21230	0.41	+1.5
4,586,359	-		DZA65_RS21230	0.41	+0.2
4,586,359	-		DZA65_RS21230	0.41	+0.3
4,586,359	-		DZA65_RS21230	0.41	-1.3
4,586,359	-		DZA65_RS21230	0.41	+0.3
4,586,359	-		DZA65_RS21230	0.41	-0.5
4,586,362	+		DZA65_RS21230	0.41	+0.9
4,586,414	-		DZA65_RS21230	0.46	+0.5
4,586,455	+		DZA65_RS21230	0.49	+1.3
4,586,481	+		DZA65_RS21230	0.52	+1.0
4,586,481	+		DZA65_RS21230	0.52	+0.3
4,586,481	+		DZA65_RS21230	0.52	+0.5
4,586,482	-		DZA65_RS21230	0.52	+0.1
4,586,482	-		DZA65_RS21230	0.52	-1.0
4,586,482	-		DZA65_RS21230	0.52	-0.2
4,586,482	-		DZA65_RS21230	0.52	-0.9
4,586,548	-		DZA65_RS21230	0.57	+2.0
4,586,595	+		DZA65_RS21230	0.62	-2.0
4,586,647	-		DZA65_RS21230	0.66	-1.9
4,586,680	+		DZA65_RS21230	0.69	-0.7
4,586,680	+		DZA65_RS21230	0.69	+0.3
4,586,680	+		DZA65_RS21230	0.69	+0.1
4,586,681	-		DZA65_RS21230	0.69	+1.1
4,586,681	-		DZA65_RS21230	0.69	-1.0
4,586,681	-		DZA65_RS21230	0.69	+1.0
4,586,681	-		DZA65_RS21230	0.69	+0.8
4,586,681	-		DZA65_RS21230	0.69	-2.0
4,586,749	+		DZA65_RS21230	0.75	+0.1
4,586,750	-		DZA65_RS21230	0.75	+0.2
4,586,750	-		DZA65_RS21230	0.75	+0.1
4,586,793	+		DZA65_RS21230	0.79	-1.8
4,586,793	+		DZA65_RS21230	0.79	+0.8
4,586,793	+		DZA65_RS21230	0.79	-0.8
4,586,793	+		DZA65_RS21230	0.79	-1.6
4,586,793	+		DZA65_RS21230	0.79	-0.6
4,586,793	+		DZA65_RS21230	0.79	+0.9
4,586,793	+		DZA65_RS21230	0.79	-2.3
4,586,794	-		DZA65_RS21230	0.79	+0.5
4,586,794	-		DZA65_RS21230	0.79	+0.6
4,586,794	-		DZA65_RS21230	0.79	-1.5
4,586,794	-		DZA65_RS21230	0.79	+0.5
4,586,794	-		DZA65_RS21230	0.79	+2.0
4,586,837	+		DZA65_RS21230	0.83	-0.5
4,586,838	-		DZA65_RS21230	0.83	+0.0
4,586,882	+		DZA65_RS21230	0.87	-0.5
4,586,882	+		DZA65_RS21230	0.87	-0.5
4,586,882	+		DZA65_RS21230	0.87	+1.1
4,586,882	+		DZA65_RS21230	0.87	-0.8
4,586,882	+		DZA65_RS21230	0.87	+1.5
4,586,883	-		DZA65_RS21230	0.87	-0.7
4,586,883	-		DZA65_RS21230	0.87	+1.2
4,586,883	-		DZA65_RS21230	0.87	-0.1
4,586,883	-		DZA65_RS21230	0.87	-1.2
4,586,883	-		DZA65_RS21230	0.87	+0.5