Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20885

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,508,625	+		DZA65_RS20880	0.59	-1.9
4,508,625	+		DZA65_RS20880	0.59	+2.0
4,508,769	+		DZA65_RS20880	0.66	-0.9
4,508,886	+		DZA65_RS20880	0.71	-0.3
4,508,886	+		DZA65_RS20880	0.71	+0.3
4,508,923	-		DZA65_RS20880	0.73	-1.5
4,509,070	+		DZA65_RS20880	0.79	-1.5
4,509,071	-		DZA65_RS20880	0.79	+0.1
4,509,071	-		DZA65_RS20880	0.79	-0.5
4,509,072	+		DZA65_RS20880	0.80	+0.2
4,509,072	+		DZA65_RS20880	0.80	+2.1
4,509,072	+		DZA65_RS20880	0.80	-1.5
4,509,072	+		DZA65_RS20880	0.80	-0.1
4,509,072	+		DZA65_RS20880	0.80	-0.1
4,509,073	-		DZA65_RS20880	0.80	-1.0
4,509,073	-		DZA65_RS20880	0.80	+0.3
4,509,073	-		DZA65_RS20880	0.80	-0.4
4,509,073	-		DZA65_RS20880	0.80	+0.5
4,509,073	-		DZA65_RS20880	0.80	+1.5
4,509,073	-		DZA65_RS20880	0.80	-1.7
4,509,073	-		DZA65_RS20880	0.80	-2.8
4,509,073	-		DZA65_RS20880	0.80	-1.5
4,509,073	-		DZA65_RS20880	0.80	-0.1
4,509,073	-		DZA65_RS20880	0.80	+0.7
4,509,073	-		DZA65_RS20880	0.80	+2.1
4,509,161	+		DZA65_RS20880	0.84	-0.5
4,509,188	+		DZA65_RS20880	0.85	-0.5
4,509,189	-		DZA65_RS20880	0.85	-0.8
4,509,201	+		DZA65_RS20880	0.85	+0.2
4,509,279	+		DZA65_RS20880	0.89	-1.4
4,509,279	+		DZA65_RS20880	0.89	+0.3
4,509,279	+		DZA65_RS20880	0.89	-1.5
4,509,280	-		DZA65_RS20880	0.89	-0.3
4,509,297	+		DZA65_RS20880	0.90	+0.6
4,509,298	-				-0.3
4,509,298	-				+0.7
4,509,325	+				+0.7
4,509,326	-				+1.5
4,509,326	-				+0.0
4,509,326	-				-1.7
4,509,428	+				+0.3
4,509,428	+				-0.1
4,509,447	+				+0.3
4,509,448	-				-0.5
4,509,448	-				-1.2
4,509,448	-				-0.3
4,509,458	-				-0.8
4,509,458	-				-0.4
4,509,458	-				-2.3
4,509,459	+				-1.4
4,509,459	+				-0.8
4,509,459	+				+0.1
4,509,459	+				-0.8
4,509,459	+				+0.5
4,509,459	+				-1.1
4,509,459	+				-0.3
4,509,459	+				+0.9
4,509,459	+				-2.7
4,509,459	+				-0.8
4,509,459	+				-1.1
4,509,459	+				-0.9
4,509,459	+				-0.7
4,509,459	+				-1.3
4,509,459	+				+0.2
4,509,459	+				+0.3
4,509,460	-				-0.2
4,509,460	-				-1.7
4,509,460	-				+0.5
4,509,460	-				+1.4
4,509,463	+				-3.7
4,509,463	+				-0.5
4,509,463	+				-0.6
4,509,463	+				-0.1
4,509,463	+				+0.7
4,509,463	+				-0.5
4,509,463	+				-0.9
4,509,464	-				+1.7
4,509,464	-				-1.5
4,509,464	-				-0.5
4,509,464	-				+0.9
4,509,464	-				+0.5
4,509,464	-				+0.7
4,509,488	+				-0.7
4,509,518	-				+0.9
4,509,518	-				-2.8
4,509,528	+				-0.6
4,509,528	+				-2.9
4,509,559	-				+0.0
4,509,645	+				-1.1
4,509,645	+				-1.4
4,509,645	+				-1.3
4,509,645	+				-0.9
4,509,646	-				-0.5
4,509,646	-				-0.7
4,509,678	+				-2.3
4,509,678	+				+0.5
4,509,678	+				-1.3
4,509,678	+				+0.5
4,509,679	-				-0.7
4,509,679	-				+0.0
4,509,679	-				-0.0
4,509,705	+				-0.3
4,509,731	-				+0.1
4,509,757	+				+1.0
4,509,758	-				-1.1
4,509,806	+		DZA65_RS20885	0.12	-1.0
4,509,806	+		DZA65_RS20885	0.12	-1.2
4,509,807	-		DZA65_RS20885	0.12	+0.7
4,509,807	-		DZA65_RS20885	0.12	-1.5
4,509,828	+		DZA65_RS20885	0.12	+0.2
4,509,829	-		DZA65_RS20885	0.12	+0.6
4,509,829	-		DZA65_RS20885	0.12	-0.9
4,509,829	-		DZA65_RS20885	0.12	-2.1
4,509,841	+		DZA65_RS20885	0.13	-0.1
4,509,841	+		DZA65_RS20885	0.13	-0.9
4,509,841	+		DZA65_RS20885	0.13	-1.1
4,509,841	+		DZA65_RS20885	0.13	-0.8
4,509,841	+		DZA65_RS20885	0.13	+0.2
4,509,842	-		DZA65_RS20885	0.13	+2.7
4,509,844	-		DZA65_RS20885	0.13	-0.7
4,509,844	-		DZA65_RS20885	0.13	-0.5
4,509,880	+		DZA65_RS20885	0.15	-0.9
4,509,881	-		DZA65_RS20885	0.15	-1.8
4,510,052	-		DZA65_RS20885	0.22	+0.4
4,510,052	-		DZA65_RS20885	0.22	+1.2
4,510,052	-		DZA65_RS20885	0.22	+0.3
4,510,158	+		DZA65_RS20885	0.26	-0.4
4,510,158	+		DZA65_RS20885	0.26	+1.0
4,510,159	-		DZA65_RS20885	0.26	+0.9
4,510,162	+		DZA65_RS20885	0.26	-2.8
4,510,162	+		DZA65_RS20885	0.26	+1.4
4,510,178	+		DZA65_RS20885	0.27	+0.5
4,510,178	+		DZA65_RS20885	0.27	-1.0
4,510,178	+		DZA65_RS20885	0.27	-2.8
4,510,178	+		DZA65_RS20885	0.27	-1.5
4,510,178	+		DZA65_RS20885	0.27	-0.6
4,510,178	+		DZA65_RS20885	0.27	-0.1
4,510,178	+		DZA65_RS20885	0.27	+1.1
4,510,178	+		DZA65_RS20885	0.27	+0.1
4,510,178	+		DZA65_RS20885	0.27	+0.7
4,510,178	+		DZA65_RS20885	0.27	-1.9
4,510,178	+		DZA65_RS20885	0.27	+1.1
4,510,178	+		DZA65_RS20885	0.27	-0.8
4,510,178	+		DZA65_RS20885	0.27	+1.5
4,510,179	-		DZA65_RS20885	0.27	+0.8
4,510,179	-		DZA65_RS20885	0.27	+1.3
4,510,179	-		DZA65_RS20885	0.27	+1.1
4,510,182	+		DZA65_RS20885	0.27	-0.1
4,510,182	+		DZA65_RS20885	0.27	-1.1
4,510,182	+		DZA65_RS20885	0.27	-0.7
4,510,183	-		DZA65_RS20885	0.27	-0.2
4,510,258	+		DZA65_RS20885	0.30	-0.2
4,510,258	+		DZA65_RS20885	0.30	-0.2
4,510,259	-		DZA65_RS20885	0.30	+0.0
4,510,259	-		DZA65_RS20885	0.30	-1.1
4,510,259	-		DZA65_RS20885	0.30	+0.0
4,510,260	+		DZA65_RS20885	0.30	-0.3
4,510,260	+		DZA65_RS20885	0.30	-3.1
4,510,260	+		DZA65_RS20885	0.30	-1.1
4,510,260	+		DZA65_RS20885	0.30	-0.4
4,510,260	+		DZA65_RS20885	0.30	-1.5
4,510,261	-		DZA65_RS20885	0.30	-0.4
4,510,261	-		DZA65_RS20885	0.30	+1.0
4,510,261	-		DZA65_RS20885	0.30	+0.0
4,510,302	+		DZA65_RS20885	0.32	-0.3
4,510,303	-		DZA65_RS20885	0.32	-0.1
4,510,303	-		DZA65_RS20885	0.32	+0.8
4,510,303	-		DZA65_RS20885	0.32	-0.4
4,510,385	+		DZA65_RS20885	0.35	-0.0
4,510,385	+		DZA65_RS20885	0.35	-0.7
4,510,386	-		DZA65_RS20885	0.35	+0.9
4,510,561	+		DZA65_RS20885	0.43	-0.7
4,510,562	-		DZA65_RS20885	0.43	+0.1
4,510,608	+		DZA65_RS20885	0.45	+1.2
4,510,609	-		DZA65_RS20885	0.45	-0.1
4,510,792	+		DZA65_RS20885	0.52	+0.1
4,510,804	+		DZA65_RS20885	0.53	-0.4
4,510,804	+		DZA65_RS20885	0.53	+0.5
4,510,879	+		DZA65_RS20885	0.56	-0.8
4,510,879	+		DZA65_RS20885	0.56	-1.0
4,510,879	+		DZA65_RS20885	0.56	-0.3
4,510,879	+		DZA65_RS20885	0.56	-1.4
4,510,879	+		DZA65_RS20885	0.56	+0.5
4,510,879	+		DZA65_RS20885	0.56	+0.5
4,510,885	+		DZA65_RS20885	0.56	-0.7
4,510,885	+		DZA65_RS20885	0.56	-1.5
4,510,885	+		DZA65_RS20885	0.56	-0.3
4,510,885	+		DZA65_RS20885	0.56	-0.2
4,510,885	+		DZA65_RS20885	0.56	-1.8
4,510,885	+				-0.1
4,510,886	-		DZA65_RS20885	0.56	-0.0
4,510,886	-		DZA65_RS20885	0.56	+1.1
4,510,886	-		DZA65_RS20885	0.56	-0.2
4,510,886	-		DZA65_RS20885	0.56	+1.1
4,510,886	-		DZA65_RS20885	0.56	-0.9
4,510,886	-		DZA65_RS20885	0.56	-0.7
4,510,890	+		DZA65_RS20885	0.56	-0.5
4,510,890	+		DZA65_RS20885	0.56	-1.1
4,510,890	+		DZA65_RS20885	0.56	+1.0
4,510,890	+		DZA65_RS20885	0.56	-0.5
4,511,017	-		DZA65_RS20885	0.61	+0.5
4,511,017	-		DZA65_RS20885	0.61	-1.0
4,511,097	+		DZA65_RS20885	0.65	-0.1
4,511,097	+		DZA65_RS20885	0.65	+0.5
4,511,148	+		DZA65_RS20885	0.67	+0.7
4,511,202	+		DZA65_RS20885	0.69	+1.7
4,511,502	+		DZA65_RS20885	0.81	+0.0
4,511,502	+		DZA65_RS20885	0.81	+0.3
4,511,502	+		DZA65_RS20885	0.81	-0.3
4,511,503	-		DZA65_RS20885	0.82	-0.5
4,511,503	-		DZA65_RS20885	0.82	-0.7
4,511,508	+		DZA65_RS20885	0.82	-0.1
4,511,562	+		DZA65_RS20885	0.84	+1.4
4,511,563	-		DZA65_RS20885	0.84	+0.4
4,511,676	+		DZA65_RS20885	0.89	+0.5
4,511,677	-		DZA65_RS20885	0.89	-0.2
4,511,677	-		DZA65_RS20885	0.89	+0.5
4,511,677	-		DZA65_RS20885	0.89	+0.4
4,511,677	-		DZA65_RS20885	0.89	-1.1
4,511,677	-		DZA65_RS20885	0.89	+1.5
4,511,739	+				+0.1
4,511,739	+				+1.0
4,511,739	+				-0.3
4,511,739	+				+0.0
4,511,739	+				-0.1
4,511,743	+				-0.7
4,511,743	+				-0.6
4,511,743	+				+0.3
4,511,743	+				+0.3
4,511,743	+				+0.1
4,511,743	+				-0.5
4,511,743	+				+0.4
4,511,744	-				+0.7
4,511,744	-				+0.4
4,511,744	-				+0.6
4,511,744	-				+0.2
4,511,744	-				-0.5
4,511,744	-				+1.1
4,511,744	-				+0.5
4,511,744	-				-0.5
4,511,744	-				+0.5
4,511,888	-				-0.4
4,511,888	-				-0.6
4,511,888	-				+0.0
4,511,966	+				-1.5
4,511,966	+				+0.1
4,511,967	-				+0.2
4,512,019	-				-2.1
4,512,055	+				-0.9
4,512,198	-		DZA65_RS20890	0.27	-0.2
4,512,226	-		DZA65_RS20890	0.30	-0.1
4,512,475	-		DZA65_RS20890	0.63	-0.4
4,512,698	+				-0.7
4,512,699	-				+0.5
4,512,796	+				-0.4
4,512,796	+				-0.5
4,512,797	-				-0.1
4,512,797	-				+1.3
4,512,840	+				+0.1
4,512,841	-				-0.6
4,512,848	-				+0.4
4,512,866	+				-0.7
4,512,866	+				+2.1
4,512,867	-				+0.1
4,512,867	-				+1.5
4,512,867	-				-0.7
4,512,880	+				+1.1
4,512,881	-				+0.7
4,512,887	+				-1.3
4,512,888	-				-0.6
4,512,888	-				-0.1
4,512,888	-				+0.0
4,512,918	-				+0.0