Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20705

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,466,922	+		DZA65_RS20700	0.67	+0.8
4,466,923	-		DZA65_RS20700	0.68	+0.6
4,466,929	+		DZA65_RS20700	0.68	-1.5
4,466,929	+		DZA65_RS20700	0.68	-1.1
4,466,930	-		DZA65_RS20700	0.68	+1.3
4,466,930	-		DZA65_RS20700	0.68	-1.2
4,466,930	-		DZA65_RS20700	0.68	-1.1
4,466,940	+		DZA65_RS20700	0.69	-1.4
4,466,940	+		DZA65_RS20700	0.69	-2.3
4,466,940	+		DZA65_RS20700	0.69	-0.5
4,466,941	-		DZA65_RS20700	0.69	-0.3
4,466,941	-		DZA65_RS20700	0.69	+0.9
4,466,941	-		DZA65_RS20700	0.69	+0.2
4,466,941	-		DZA65_RS20700	0.69	+0.7
4,467,069	+		DZA65_RS20700	0.78	+0.5
4,467,108	+		DZA65_RS20700	0.81	-0.0
4,467,108	+		DZA65_RS20700	0.81	-1.6
4,467,111	+		DZA65_RS20700	0.81	-0.8
4,467,112	-		DZA65_RS20700	0.81	-0.5
4,467,112	-		DZA65_RS20700	0.81	+0.6
4,467,112	-		DZA65_RS20700	0.81	+0.1
4,467,146	-		DZA65_RS20700	0.84	-1.5
4,467,146	-		DZA65_RS20700	0.84	+1.7
4,467,153	+		DZA65_RS20700	0.84	-2.1
4,467,154	-		DZA65_RS20700	0.84	+0.9
4,467,154	-		DZA65_RS20700	0.84	+0.4
4,467,292	-				+1.2
4,467,395	+				-0.1
4,467,396	-				+0.5
4,467,396	-				-0.1
4,467,451	-				-0.9
4,467,451	-				-1.1
4,467,451	-				-0.4
4,467,461	-				+0.4
4,467,461	-				-0.7
4,467,499	+				-1.3
4,467,500	-				+0.7
4,467,516	+				-3.1
4,467,516	+				+1.1
4,467,568	+				-0.1
4,467,605	+				-0.2
4,467,652	-				+0.2
4,467,695	+				-0.2
4,467,719	+				-1.3
4,467,719	+				-0.8
4,467,720	-				-0.0
4,467,720	-				+0.5
4,467,720	-				+0.5
4,467,720	-				-0.2
4,467,740	+				-0.0
4,467,740	+				+0.3
4,467,740	+				-2.3
4,467,740	+				+0.4
4,467,740	+				+0.5
4,467,740	+				+1.8
4,467,740	+				-0.3
4,467,740	+				+1.1
4,467,740	+				-0.1
4,467,740	+				-0.5
4,467,741	-				+0.5
4,467,741	-				-0.6
4,467,741	-				+0.0
4,467,741	-				+0.6
4,467,741	-				-1.1
4,467,741	-				-1.0
4,467,741	-				+0.3
4,467,741	-				+0.2
4,467,741	-				-0.2
4,467,741	-				-0.5
4,467,741	-				+0.8
4,467,744	+				-1.3
4,467,744	+				-0.8
4,467,744	+				+0.8
4,467,744	+				-0.1
4,467,744	+				+1.1
4,467,777	+				-1.8
4,467,805	+				-0.2
4,467,805	+				-1.8
4,467,825	+				-1.5
4,467,825	+				+0.1
4,467,825	+				+0.5
4,467,826	-				+0.0
4,467,826	-				-0.6
4,467,860	+				+0.1
4,467,860	+				+0.2
4,467,861	-				-0.6
4,467,861	-				+1.9
4,467,863	+				-2.5
4,467,863	+				+0.9
4,467,863	+				-0.7
4,467,863	+				+1.2
4,467,863	+				-1.2
4,467,863	+				-1.4
4,467,863	+				-0.5
4,467,864	-				-1.1
4,467,864	-				+0.2
4,467,864	-				+0.6
4,467,975	+		DZA65_RS20705	0.13	-0.1
4,467,984	+		DZA65_RS20705	0.14	-2.8
4,467,984	+		DZA65_RS20705	0.14	-0.8
4,467,985	-		DZA65_RS20705	0.14	+0.8
4,467,985	-		DZA65_RS20705	0.14	-1.1
4,468,011	+				+0.5
4,468,011	+		DZA65_RS20705	0.16	+1.2
4,468,012	-		DZA65_RS20705	0.16	-0.5
4,468,012	-		DZA65_RS20705	0.16	+0.1
4,468,012	-		DZA65_RS20705	0.16	+0.8
4,468,018	-		DZA65_RS20705	0.17	+1.2
4,468,018	-		DZA65_RS20705	0.17	-1.7
4,468,057	+		DZA65_RS20705	0.20	-0.5
4,468,057	+		DZA65_RS20705	0.20	+1.5
4,468,057	+		DZA65_RS20705	0.20	-0.3
4,468,057	+		DZA65_RS20705	0.20	-1.5
4,468,057	+		DZA65_RS20705	0.20	-0.7
4,468,057	+		DZA65_RS20705	0.20	-0.8
4,468,057	+		DZA65_RS20705	0.20	-0.1
4,468,057	+		DZA65_RS20705	0.20	-1.1
4,468,057	+		DZA65_RS20705	0.20	-0.2
4,468,058	-		DZA65_RS20705	0.21	-1.2
4,468,058	-		DZA65_RS20705	0.21	-0.1
4,468,058	-		DZA65_RS20705	0.21	+0.7
4,468,058	-		DZA65_RS20705	0.21	+0.4
4,468,058	-		DZA65_RS20705	0.21	-1.3
4,468,058	-		DZA65_RS20705	0.21	-1.8
4,468,058	-		DZA65_RS20705	0.21	-0.9
4,468,060	-		DZA65_RS20705	0.21	-2.3
4,468,060	-		DZA65_RS20705	0.21	-0.3
4,468,101	+		DZA65_RS20705	0.24	+0.1
4,468,101	+		DZA65_RS20705	0.24	+1.5
4,468,102	-		DZA65_RS20705	0.24	-1.1
4,468,204	-		DZA65_RS20705	0.34	-0.8
4,468,213	-				-0.1
4,468,236	-		DZA65_RS20705	0.36	-1.7
4,468,420	+		DZA65_RS20705	0.53	+0.9
4,468,420	+		DZA65_RS20705	0.53	-0.5
4,468,421	-		DZA65_RS20705	0.53	-0.6
4,468,421	-		DZA65_RS20705	0.53	+0.0
4,468,421	-		DZA65_RS20705	0.53	-0.1
4,468,435	+		DZA65_RS20705	0.54	+0.2
4,468,435	+		DZA65_RS20705	0.54	-0.4
4,468,435	+		DZA65_RS20705	0.54	-0.8
4,468,435	+		DZA65_RS20705	0.54	-0.5
4,468,435	+		DZA65_RS20705	0.54	-0.5
4,468,435	+		DZA65_RS20705	0.54	-0.5
4,468,435	+		DZA65_RS20705	0.54	-1.5
4,468,435	+		DZA65_RS20705	0.54	-1.3
4,468,436	-		DZA65_RS20705	0.54	-0.2
4,468,436	-		DZA65_RS20705	0.54	-0.6
4,468,436	-		DZA65_RS20705	0.54	-0.9
4,468,441	+		DZA65_RS20705	0.55	-0.7
4,468,441	+				-1.1
4,468,441	+		DZA65_RS20705	0.55	-0.8
4,468,441	+		DZA65_RS20705	0.55	+0.4
4,468,441	+		DZA65_RS20705	0.55	-0.4
4,468,441	+		DZA65_RS20705	0.55	-1.4
4,468,441	+		DZA65_RS20705	0.55	-0.0
4,468,441	+		DZA65_RS20705	0.55	-0.0
4,468,441	+		DZA65_RS20705	0.55	-0.7
4,468,442	-		DZA65_RS20705	0.55	+0.1
4,468,442	-		DZA65_RS20705	0.55	+0.8
4,468,442	-		DZA65_RS20705	0.55	+0.1
4,468,442	-		DZA65_RS20705	0.55	+0.7
4,468,442	-		DZA65_RS20705	0.55	+0.5
4,468,442	-		DZA65_RS20705	0.55	+0.5
4,468,442	-		DZA65_RS20705	0.55	-1.5
4,468,442	-		DZA65_RS20705	0.55	-1.0
4,468,442	-		DZA65_RS20705	0.55	-2.7
4,468,442	-		DZA65_RS20705	0.55	-0.2
4,468,442	-		DZA65_RS20705	0.55	+0.4
4,468,442	-		DZA65_RS20705	0.55	-0.8
4,468,503	+		DZA65_RS20705	0.60	-2.4
4,468,503	+		DZA65_RS20705	0.60	-0.1
4,468,510	+		DZA65_RS20705	0.61	-0.7
4,468,510	+		DZA65_RS20705	0.61	+0.4
4,468,510	+		DZA65_RS20705	0.61	-0.1
4,468,510	+		DZA65_RS20705	0.61	+0.3
4,468,510	+		DZA65_RS20705	0.61	-0.5
4,468,510	+				+1.5
4,468,510	+		DZA65_RS20705	0.61	+0.8
4,468,511	-		DZA65_RS20705	0.61	-1.1
4,468,511	-		DZA65_RS20705	0.61	-0.8
4,468,511	-		DZA65_RS20705	0.61	-0.2
4,468,511	-		DZA65_RS20705	0.61	-2.5
4,468,511	-		DZA65_RS20705	0.61	-0.5
4,468,525	+		DZA65_RS20705	0.62	+0.2
4,468,525	+		DZA65_RS20705	0.62	-1.5
4,468,571	+		DZA65_RS20705	0.66	-1.7
4,468,572	-		DZA65_RS20705	0.66	+0.6
4,468,572	-		DZA65_RS20705	0.66	+0.4
4,468,572	-		DZA65_RS20705	0.66	+0.5
4,468,572	-		DZA65_RS20705	0.66	-0.9
4,468,579	+		DZA65_RS20705	0.67	-2.5
4,468,579	+		DZA65_RS20705	0.67	+2.1
4,468,579	+		DZA65_RS20705	0.67	+0.2
4,468,580	-		DZA65_RS20705	0.67	+0.4
4,468,580	-		DZA65_RS20705	0.67	+0.3
4,468,580	-		DZA65_RS20705	0.67	-0.2
4,468,580	-		DZA65_RS20705	0.67	-0.1
4,468,580	-		DZA65_RS20705	0.67	+0.7
4,468,580	-		DZA65_RS20705	0.67	-0.6
4,468,591	+		DZA65_RS20705	0.68	+0.4
4,468,591	+		DZA65_RS20705	0.68	-0.5
4,468,592	-		DZA65_RS20705	0.68	-0.5
4,468,592	-		DZA65_RS20705	0.68	+0.5
4,468,592	-		DZA65_RS20705	0.68	+0.0
4,468,592	-		DZA65_RS20705	0.68	+0.0
4,468,761	+		DZA65_RS20705	0.83	-0.1
4,468,761	+		DZA65_RS20705	0.83	+0.2
4,468,761	+		DZA65_RS20705	0.83	+0.0
4,468,765	+		DZA65_RS20705	0.83	+0.9
4,468,765	+		DZA65_RS20705	0.83	-0.1
4,468,765	+		DZA65_RS20705	0.83	-0.9
4,468,765	+		DZA65_RS20705	0.83	+0.5
4,468,765	+		DZA65_RS20705	0.83	+0.3
4,468,765	+		DZA65_RS20705	0.83	+0.8
4,468,766	-		DZA65_RS20705	0.83	-0.5
4,468,766	-		DZA65_RS20705	0.83	-0.3
4,468,766	-		DZA65_RS20705	0.83	-0.4
4,468,766	-		DZA65_RS20705	0.83	+3.1
4,468,766	-		DZA65_RS20705	0.83	+0.5
4,468,766	-		DZA65_RS20705	0.83	-0.1
4,468,798	+		DZA65_RS20705	0.86	-0.7
4,468,798	+		DZA65_RS20705	0.86	-0.9
4,468,798	+		DZA65_RS20705	0.86	-1.8
4,468,798	+		DZA65_RS20705	0.86	-1.8
4,468,798	+		DZA65_RS20705	0.86	-1.1
4,468,799	-		DZA65_RS20705	0.86	+1.0
4,468,799	-		DZA65_RS20705	0.86	+0.2
4,468,799	-		DZA65_RS20705	0.86	+1.2
4,468,799	-		DZA65_RS20705	0.86	-0.7
4,468,799	-		DZA65_RS20705	0.86	-0.4
4,468,799	-		DZA65_RS20705	0.86	+0.5
4,468,813	-		DZA65_RS20705	0.88	+0.6
4,468,813	-		DZA65_RS20705	0.88	-0.1
4,468,813	-		DZA65_RS20705	0.88	-0.2
4,468,849	+				+0.5
4,468,849	+				-0.7
4,468,850	-				+0.5
4,468,855	+				-0.2
4,468,855	+				-1.4
4,468,855	+				-0.2
4,468,855	+				-0.0
4,468,855	+				+0.3
4,468,856	-				+0.2
4,468,856	-				+1.1
4,468,856	-				+1.5
4,468,856	-				-0.5
4,468,856	-				-0.1
4,468,856	-				-0.2
4,468,856	-				+0.9
4,468,856	-				+0.3
4,468,856	-				+0.9
4,468,865	+				-1.5
4,468,897	-				-1.1
4,468,897	-				-0.7
4,468,900	+				-0.6
4,468,901	-				-0.0
4,468,901	-				+0.7
4,468,901	-				-0.5
4,468,901	-				-1.2
4,468,947	+				+0.1
4,468,947	+				-0.2
4,468,947	+				+0.7
4,468,947	+				+0.3
4,468,948	-				-0.3
4,468,952	-				-2.7
4,468,952	-				-0.0
4,469,041	+				-0.4
4,469,041	+				-2.1
4,469,042	-				+0.7
4,469,054	-				-0.2
4,469,056	+				-0.9
4,469,056	+				+0.7
4,469,056	+				-0.0
4,469,059	+				-0.8
4,469,059	+				-0.1
4,469,059	+				-2.5
4,469,059	+				-1.8
4,469,059	+				+0.1
4,469,060	-				-0.6
4,469,060	-				-0.1
4,469,060	-				+0.8
4,469,060	-				-0.9
4,469,060	-				-0.9
4,469,060	-				-1.1
4,469,060	-				-0.8
4,469,060	-				-0.7
4,469,060	-				-1.1
4,469,060	-				-0.7
4,469,060	-				-0.9
4,469,060	-				+3.1
4,469,060	-				+0.3
4,469,061	+				-0.5
4,469,062	-				+0.7
4,469,072	+				-0.8
4,469,072	+				-0.3
4,469,072	+				+0.7
4,469,072	+				-0.5
4,469,072	+				+0.3
4,469,072	+				+0.2
4,469,072	+				+1.3
4,469,072	+				-1.3
4,469,073	-				-0.7
4,469,075	+				-0.2
4,469,075	+				-1.1
4,469,075	+				-0.2
4,469,075	+				-0.4
4,469,075	+				-0.9
4,469,076	-				-1.1
4,469,076	-				-0.1
4,469,076	-				-0.3
4,469,076	-				-1.5
4,469,076	-				-1.2
4,469,076	-				+0.7
4,469,105	-				+0.7
4,469,105	-				-0.1
4,469,140	+				-0.5
4,469,140	+				-1.8
4,469,140	+				-0.4
4,469,140	+				-1.8
4,469,140	+				-1.1
4,469,140	+				+0.3
4,469,141	-				-0.5
4,469,141	-				-1.5
4,469,141	-				+0.1
4,469,141	-				-2.3
4,469,141	-				+0.8
4,469,141	-				+0.1
4,469,141	-				-1.9
4,469,142	+				+1.5
4,469,142	+				-0.8
4,469,142	+				+0.3
4,469,143	-				-2.1
4,469,166	-				-1.0
4,469,169	+				-0.4
4,469,170	-				+0.4
4,469,184	+				+0.3
4,469,185	-				-0.2
4,469,197	-				+0.5
4,469,200	+				+0.9
4,469,201	-				+0.1
4,469,201	-				+1.2
4,469,201	-				-2.5
4,469,204	+				+0.5
4,469,204	+				+0.5
4,469,204	+				+0.5
4,469,204	+				-0.7
4,469,204	+				-0.1
4,469,205	-				+0.9
4,469,205	-				+0.0
4,469,207	+				+0.3
4,469,207	+				-1.5
4,469,207	+				+0.1
4,469,208	-				+2.4
4,469,260	+				-1.6
4,469,261	-				+1.1
4,469,261	-				+1.0
4,469,314	-				-0.5
4,469,350	+				+0.1
4,469,350	+				+0.1
4,469,350	+				+0.5
4,469,351	-				+0.1
4,469,351	-				+1.8
4,469,351	-				-0.3
4,469,351	-				-0.7
4,469,351	-				+1.0
4,469,351	-				+0.5
4,469,354	+				-0.5
4,469,354	+				+0.7
4,469,354	+				-0.0
4,469,354	+				-0.1
4,469,354	+				+0.2
4,469,355	-				+0.1
4,469,355	-				-0.5
4,469,355	-				-0.2
4,469,355	-				+0.3
4,469,355	-				+0.7
4,469,355	-				+0.2
4,469,355	-				+1.4
4,469,358	+				+0.3
4,469,358	+				+0.1
4,469,359	-				-3.1
4,469,359	-				+0.2
4,469,359	-				+0.1
4,469,359	-				+0.8
4,469,370	-				-0.2
4,469,370	-				+0.2
4,469,370	-				-0.1
4,469,370	-				+1.1
4,469,394	-				+0.2
4,469,394	-				-1.8
4,469,394	-				-0.6
4,469,394	-				-1.5
4,469,444	+				-0.7
4,469,444	+				-0.9
4,469,444	+				+1.1
4,469,444	+				+1.3
4,469,444	+				+0.5
4,469,444	+				-2.1
4,469,444	+				+1.0
4,469,444	+				-0.7
4,469,444	+				-0.6
4,469,444	+				-1.6
4,469,444	+				+0.2
4,469,444	+				+0.5
4,469,445	-				-0.5
4,469,445	-				-1.1
4,469,445	-				-1.5
4,469,445	-				+1.0
4,469,445	-				-1.2
4,469,445	-				-2.8
4,469,445	-				-1.1
4,469,445	-				+0.7
4,469,445	-				-1.1
4,469,445	-				-0.5
4,469,445	-				-1.6
4,469,446	+				+0.2
4,469,447	-				-1.7
4,469,464	+				-0.2
4,469,464	+				-0.1
4,469,465	-				-0.1
4,469,553	+				+0.8
4,469,587	+				+0.2
4,469,588	-				+0.1
4,469,588	-				+0.3
4,469,589	+				-0.5
4,469,589	+				-1.6
4,469,589	+				-2.1
4,469,590	-				+0.9
4,469,611	-				-0.9
4,469,652	+		DZA65_RS20710	0.13	+0.6
4,469,704	-		DZA65_RS20710	0.18	+0.4
4,469,704	-		DZA65_RS20710	0.18	+0.2
4,469,730	+		DZA65_RS20710	0.20	+0.8
4,469,730	+		DZA65_RS20710	0.20	-1.1
4,469,730	+		DZA65_RS20710	0.20	-2.5
4,469,730	+		DZA65_RS20710	0.20	-1.7
4,469,730	+		DZA65_RS20710	0.20	-0.8
4,469,730	+		DZA65_RS20710	0.20	+0.7
4,469,731	-		DZA65_RS20710	0.20	-2.8
4,469,731	-		DZA65_RS20710	0.20	-0.8
4,469,734	+		DZA65_RS20710	0.20	-0.4
4,469,734	+		DZA65_RS20710	0.20	+0.9
4,469,734	+		DZA65_RS20710	0.20	-0.7
4,469,734	+		DZA65_RS20710	0.20	-0.9
4,469,734	+		DZA65_RS20710	0.20	+0.3
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4,469,735	-		DZA65_RS20710	0.20	-0.8
4,469,735	-		DZA65_RS20710	0.20	+0.6
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4,469,735	-		DZA65_RS20710	0.20	-0.5
4,469,735	-		DZA65_RS20710	0.20	-1.1
4,469,735	-		DZA65_RS20710	0.20	-1.0
4,469,735	-		DZA65_RS20710	0.20	-1.9
4,469,736	+		DZA65_RS20710	0.20	+0.5
4,469,871	+		DZA65_RS20710	0.32	-0.1
4,469,888	+		DZA65_RS20710	0.34	+0.0
4,469,909	+		DZA65_RS20710	0.36	-2.7
4,469,909	+		DZA65_RS20710	0.36	+0.8
4,469,909	+		DZA65_RS20710	0.36	+0.4
4,469,909	+		DZA65_RS20710	0.36	+2.0
4,469,909	+		DZA65_RS20710	0.36	-0.2
4,469,909	+		DZA65_RS20710	0.36	-2.8
4,469,910	-		DZA65_RS20710	0.36	+0.2
4,469,912	+		DZA65_RS20710	0.36	+0.9
4,469,912	+		DZA65_RS20710	0.36	-0.1
4,469,912	+		DZA65_RS20710	0.36	-1.3
4,469,913	-		DZA65_RS20710	0.36	-0.1
4,469,913	-		DZA65_RS20710	0.36	+3.7
4,469,913	-		DZA65_RS20710	0.36	+0.2
4,469,913	-		DZA65_RS20710	0.36	-1.6
4,469,925	+		DZA65_RS20710	0.37	-0.2
4,469,932	+		DZA65_RS20710	0.38	+0.5