Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20620

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,447,376	-		DZA65_RS20615	0.48	+0.1
4,447,376	-		DZA65_RS20615	0.48	+1.7
4,447,376	-		DZA65_RS20615	0.48	+0.4
4,447,393	+		DZA65_RS20615	0.49	-0.7
4,447,393	+		DZA65_RS20615	0.49	-1.5
4,447,394	-		DZA65_RS20615	0.49	+0.7
4,447,394	-		DZA65_RS20615	0.49	+1.6
4,447,394	-		DZA65_RS20615	0.49	+1.9
4,447,400	+		DZA65_RS20615	0.49	+0.5
4,447,400	+		DZA65_RS20615	0.49	-0.1
4,447,401	-		DZA65_RS20615	0.49	-0.5
4,447,401	-		DZA65_RS20615	0.49	-0.1
4,447,401	-		DZA65_RS20615	0.49	-1.1
4,447,401	-		DZA65_RS20615	0.49	+1.0
4,447,401	-		DZA65_RS20615	0.49	-0.3
4,447,401	-		DZA65_RS20615	0.49	+0.2
4,447,459	+		DZA65_RS20615	0.52	+1.4
4,447,460	-		DZA65_RS20615	0.52	+0.2
4,447,460	-		DZA65_RS20615	0.52	-0.4
4,447,590	-		DZA65_RS20615	0.59	+1.8
4,447,595	+		DZA65_RS20615	0.60	+0.5
4,447,595	+		DZA65_RS20615	0.60	-0.2
4,447,596	-		DZA65_RS20615	0.60	+0.2
4,447,596	-		DZA65_RS20615	0.60	+0.9
4,447,700	+		DZA65_RS20615	0.66	-0.7
4,447,727	-		DZA65_RS20615	0.67	+0.8
4,447,767	+				+0.5
4,447,767	+		DZA65_RS20615	0.69	+0.2
4,447,767	+		DZA65_RS20615	0.69	+0.5
4,447,767	+		DZA65_RS20615	0.69	-1.5
4,447,768	-		DZA65_RS20615	0.69	-0.1
4,447,768	-		DZA65_RS20615	0.69	-2.8
4,447,768	-		DZA65_RS20615	0.69	+0.5
4,447,768	-		DZA65_RS20615	0.69	+2.1
4,448,002	+		DZA65_RS20615	0.82	+0.3
4,448,002	+		DZA65_RS20615	0.82	-1.1
4,448,002	+		DZA65_RS20615	0.82	+1.2
4,448,002	+		DZA65_RS20615	0.82	+0.7
4,448,002	+		DZA65_RS20615	0.82	-0.8
4,448,064	-		DZA65_RS20615	0.86	+1.4
4,448,114	+		DZA65_RS20615	0.88	-0.2
4,448,114	+		DZA65_RS20615	0.88	+0.9
4,448,114	+		DZA65_RS20615	0.88	+0.2
4,448,115	-		DZA65_RS20615	0.89	+2.5
4,448,130	+		DZA65_RS20615	0.89	+0.2
4,448,130	+		DZA65_RS20615	0.89	+0.6
4,448,130	+		DZA65_RS20615	0.89	-0.3
4,448,130	+		DZA65_RS20615	0.89	-0.9
4,448,130	+		DZA65_RS20615	0.89	-0.2
4,448,130	+		DZA65_RS20615	0.89	-0.2
4,448,130	+		DZA65_RS20615	0.89	-0.4
4,448,131	-		DZA65_RS20615	0.89	+0.1
4,448,131	-		DZA65_RS20615	0.89	+1.7
4,448,218	+				-0.0
4,448,274	+				+0.6
4,448,274	+				+0.7
4,448,275	-				+1.1
4,448,368	-				-1.0
4,448,419	-		DZA65_RS20620	0.17	-0.4
4,448,446	+		DZA65_RS20620	0.22	-0.2
4,448,446	+		DZA65_RS20620	0.22	+0.4
4,448,480	+		DZA65_RS20620	0.28	+0.3
4,448,480	+		DZA65_RS20620	0.28	-0.1
4,448,480	+		DZA65_RS20620	0.28	+2.0
4,448,480	+		DZA65_RS20620	0.28	+0.8
4,448,481	-		DZA65_RS20620	0.28	+0.5
4,448,481	-		DZA65_RS20620	0.28	+1.0
4,448,481	-		DZA65_RS20620	0.28	+0.9
4,448,481	-		DZA65_RS20620	0.28	-0.4
4,448,481	-		DZA65_RS20620	0.28	-1.3
4,448,481	-		DZA65_RS20620	0.28	-0.1
4,448,483	+		DZA65_RS20620	0.29	-0.2
4,448,483	+		DZA65_RS20620	0.29	-2.5
4,448,483	+		DZA65_RS20620	0.29	+1.1
4,448,483	+		DZA65_RS20620	0.29	+0.9
4,448,483	+		DZA65_RS20620	0.29	-1.7
4,448,483	+		DZA65_RS20620	0.29	+0.7
4,448,483	+		DZA65_RS20620	0.29	-0.3
4,448,483	+		DZA65_RS20620	0.29	-0.3
4,448,483	+		DZA65_RS20620	0.29	+0.4
4,448,483	+		DZA65_RS20620	0.29	+0.3
4,448,483	+		DZA65_RS20620	0.29	+0.6
4,448,484	-		DZA65_RS20620	0.29	+1.5
4,448,484	-		DZA65_RS20620	0.29	-0.2
4,448,484	-		DZA65_RS20620	0.29	+1.5
4,448,484	-		DZA65_RS20620	0.29	+0.8
4,448,484	-		DZA65_RS20620	0.29	+0.4
4,448,484	-		DZA65_RS20620	0.29	+0.1
4,448,484	-		DZA65_RS20620	0.29	-1.0
4,448,484	-		DZA65_RS20620	0.29	-2.3
4,448,484	-		DZA65_RS20620	0.29	-2.7
4,448,484	-		DZA65_RS20620	0.29	+0.5
4,448,565	+		DZA65_RS20620	0.44	-0.3
4,448,566	-		DZA65_RS20620	0.44	-0.2
4,448,658	+		DZA65_RS20620	0.61	+0.2
4,448,658	+		DZA65_RS20620	0.61	-1.0
4,448,658	+		DZA65_RS20620	0.61	+0.1
4,448,658	+		DZA65_RS20620	0.61	+0.5
4,448,658	+		DZA65_RS20620	0.61	+1.0
4,448,658	+		DZA65_RS20620	0.61	+0.5
4,448,658	+		DZA65_RS20620	0.61	-0.1
4,448,658	+		DZA65_RS20620	0.61	-0.7
4,448,658	+		DZA65_RS20620	0.61	+1.5
4,448,658	+		DZA65_RS20620	0.61	-1.5
4,448,658	+		DZA65_RS20620	0.61	+1.8
4,448,658	+		DZA65_RS20620	0.61	-1.1
4,448,658	+		DZA65_RS20620	0.61	+0.8
4,448,658	+		DZA65_RS20620	0.61	-1.1
4,448,658	+		DZA65_RS20620	0.61	-3.0
4,448,658	+		DZA65_RS20620	0.61	+0.1
4,448,658	+		DZA65_RS20620	0.61	-0.1
4,448,658	+		DZA65_RS20620	0.61	-0.7
4,448,659	-		DZA65_RS20620	0.61	+0.5
4,448,659	-		DZA65_RS20620	0.61	+0.7
4,448,659	-		DZA65_RS20620	0.61	+1.3
4,448,659	-		DZA65_RS20620	0.61	+0.2
4,448,659	-		DZA65_RS20620	0.61	+1.2
4,448,659	-		DZA65_RS20620	0.61	+1.2
4,448,659	-		DZA65_RS20620	0.61	+0.2
4,448,659	-		DZA65_RS20620	0.61	-0.5
4,448,659	-		DZA65_RS20620	0.61	+3.7
4,448,659	-		DZA65_RS20620	0.61	-1.8
4,448,659	-		DZA65_RS20620	0.61	-0.5
4,448,659	-		DZA65_RS20620	0.61	-0.4
4,448,659	-		DZA65_RS20620	0.61	+0.2
4,448,659	-		DZA65_RS20620	0.61	-0.8
4,448,659	-		DZA65_RS20620	0.61	+1.2
4,448,659	-		DZA65_RS20620	0.61	-1.0
4,448,659	-		DZA65_RS20620	0.61	+2.5
4,448,659	-		DZA65_RS20620	0.61	+4.2
4,448,659	-		DZA65_RS20620	0.61	+0.7
4,448,662	+		DZA65_RS20620	0.61	+0.8
4,448,662	+		DZA65_RS20620	0.61	+1.3
4,448,662	+		DZA65_RS20620	0.61	+0.3
4,448,662	+		DZA65_RS20620	0.61	+1.1
4,448,662	+		DZA65_RS20620	0.61	+1.2
4,448,663	-		DZA65_RS20620	0.61	+1.2
4,448,663	-		DZA65_RS20620	0.61	+0.9
4,448,663	-		DZA65_RS20620	0.61	+0.8
4,448,663	-		DZA65_RS20620	0.61	-0.7
4,448,663	-		DZA65_RS20620	0.61	+1.0
4,448,664	+		DZA65_RS20620	0.62	-1.5
4,448,664	+		DZA65_RS20620	0.62	-0.6
4,448,665	-		DZA65_RS20620	0.62	+0.2
4,448,665	-		DZA65_RS20620	0.62	+0.5
4,448,681	+		DZA65_RS20620	0.65	+1.1
4,448,681	+		DZA65_RS20620	0.65	+0.5
4,448,682	-		DZA65_RS20620	0.65	+0.9
4,448,682	-		DZA65_RS20620	0.65	+0.9
4,448,682	-		DZA65_RS20620	0.65	-0.1
4,448,686	+		DZA65_RS20620	0.66	-1.9
4,448,725	+		DZA65_RS20620	0.73	+0.9
4,448,745	+		DZA65_RS20620	0.76	+0.5
4,448,754	+		DZA65_RS20620	0.78	+0.2
4,448,798	+		DZA65_RS20620	0.86	+0.2
4,448,798	+		DZA65_RS20620	0.86	-0.5
4,448,798	+		DZA65_RS20620	0.86	+0.5
4,448,798	+		DZA65_RS20620	0.86	+0.5
4,448,798	+		DZA65_RS20620	0.86	-2.3
4,448,798	+		DZA65_RS20620	0.86	+0.4
4,448,798	+		DZA65_RS20620	0.86	+0.0
4,448,798	+		DZA65_RS20620	0.86	-0.5
4,448,799	-		DZA65_RS20620	0.86	-0.2
4,448,799	-		DZA65_RS20620	0.86	+0.7
4,448,799	-		DZA65_RS20620	0.86	+1.8
4,448,799	-		DZA65_RS20620	0.86	-0.7
4,448,799	-		DZA65_RS20620	0.86	-0.2
4,448,799	-		DZA65_RS20620	0.86	+0.5
4,448,799	-		DZA65_RS20620	0.86	+1.2
4,448,801	+				+1.2
4,448,801	+		DZA65_RS20620	0.86	-1.1
4,448,801	+		DZA65_RS20620	0.86	+0.3
4,448,802	-		DZA65_RS20620	0.87	-0.3
4,448,802	-		DZA65_RS20620	0.87	-2.8
4,448,802	-		DZA65_RS20620	0.87	+0.5
4,448,802	-		DZA65_RS20620	0.87	-1.2
4,448,802	-		DZA65_RS20620	0.87	+0.2
4,448,802	-		DZA65_RS20620	0.87	-0.0
4,448,802	-		DZA65_RS20620	0.87	+0.2
4,448,802	-		DZA65_RS20620	0.87	-1.1
4,448,802	-		DZA65_RS20620	0.87	-0.1
4,448,804	+		DZA65_RS20620	0.87	+0.8
4,448,804	+		DZA65_RS20620	0.87	+0.5
4,448,804	+		DZA65_RS20620	0.87	+1.1
4,448,804	+		DZA65_RS20620	0.87	+0.2
4,448,804	+		DZA65_RS20620	0.87	+1.0
4,448,804	+		DZA65_RS20620	0.87	+0.5
4,448,804	+		DZA65_RS20620	0.87	+0.5
4,448,804	+		DZA65_RS20620	0.87	+1.2
4,448,805	-		DZA65_RS20620	0.87	+0.5
4,448,805	-		DZA65_RS20620	0.87	+1.8
4,448,805	-		DZA65_RS20620	0.87	-0.7
4,448,805	-		DZA65_RS20620	0.87	+1.5
4,448,805	-		DZA65_RS20620	0.87	+0.7
4,448,805	-		DZA65_RS20620	0.87	-0.6
4,448,805	-		DZA65_RS20620	0.87	+0.7
4,448,805	-		DZA65_RS20620	0.87	+0.9
4,448,809	+		DZA65_RS20620	0.88	-0.1
4,448,809	+		DZA65_RS20620	0.88	-1.1
4,448,810	-		DZA65_RS20620	0.88	-0.1
4,448,934	+				+0.5
4,448,934	+				+0.6
4,448,934	+				-1.2
4,448,934	+				-1.5
4,448,934	+				-0.6
4,448,934	+				+0.2
4,448,934	+				+0.5
4,448,934	+				-0.8
4,448,934	+				+0.2
4,448,935	-				-0.5
4,448,935	-				+0.2
4,448,935	-				-0.2
4,448,935	-				-2.1
4,448,974	+				-1.1
4,448,974	+				+1.2
4,448,975	-				-1.3
4,448,979	+				+1.1
4,448,979	+				+1.2
4,448,980	-				+0.5
4,448,980	-				-0.1
4,448,980	-				-0.7
4,448,999	+				+1.6
4,448,999	+				+1.6
4,449,000	-				+0.0
4,449,131	-				-0.8
4,449,246	+		DZA65_RS20625	0.13	+0.5
4,449,246	+		DZA65_RS20625	0.13	-1.8
4,449,246	+		DZA65_RS20625	0.13	+0.7
4,449,246	+		DZA65_RS20625	0.13	+0.9
4,449,246	+		DZA65_RS20625	0.13	-0.1
4,449,246	+		DZA65_RS20625	0.13	+1.2
4,449,246	+		DZA65_RS20625	0.13	-0.2
4,449,246	+		DZA65_RS20625	0.13	-0.6
4,449,247	-		DZA65_RS20625	0.13	+0.5
4,449,247	-		DZA65_RS20625	0.13	+0.2
4,449,247	-		DZA65_RS20625	0.13	+0.8
4,449,247	-		DZA65_RS20625	0.13	-0.5
4,449,465	-		DZA65_RS20625	0.24	-0.1
4,449,465	-		DZA65_RS20625	0.24	-0.6
4,449,582	+		DZA65_RS20625	0.30	-2.1
4,449,582	+		DZA65_RS20625	0.30	+0.9
4,449,583	-		DZA65_RS20625	0.30	-0.1
4,449,602	+		DZA65_RS20625	0.31	+0.2
4,449,602	+		DZA65_RS20625	0.31	-0.8
4,449,602	+		DZA65_RS20625	0.31	+0.7
4,449,603	-		DZA65_RS20625	0.31	-0.1
4,449,603	-		DZA65_RS20625	0.31	-1.8
4,449,678	+		DZA65_RS20625	0.35	+0.5
4,449,678	+		DZA65_RS20625	0.35	+1.5
4,449,678	+		DZA65_RS20625	0.35	+0.8
4,449,690	+		DZA65_RS20625	0.36	+0.6
4,449,690	+		DZA65_RS20625	0.36	-0.1
4,449,690	+		DZA65_RS20625	0.36	-1.8
4,449,690	+		DZA65_RS20625	0.36	-1.5
4,449,690	+		DZA65_RS20625	0.36	+0.1
4,449,691	-		DZA65_RS20625	0.36	+0.6
4,449,691	-		DZA65_RS20625	0.36	+0.1
4,449,691	-		DZA65_RS20625	0.36	+1.0
4,449,691	-		DZA65_RS20625	0.36	-3.4
4,449,691	-		DZA65_RS20625	0.36	+0.7
4,449,691	-		DZA65_RS20625	0.36	+1.3
4,449,691	-		DZA65_RS20625	0.36	-1.4
4,449,691	-		DZA65_RS20625	0.36	+0.8
4,449,691	-		DZA65_RS20625	0.36	+0.7
4,449,691	-		DZA65_RS20625	0.36	-0.5
4,449,744	+		DZA65_RS20625	0.39	+0.6
4,449,744	+		DZA65_RS20625	0.39	+0.5
4,449,744	+		DZA65_RS20625	0.39	-0.5
4,449,744	+		DZA65_RS20625	0.39	-3.3
4,449,744	+		DZA65_RS20625	0.39	-1.0
4,449,744	+		DZA65_RS20625	0.39	+0.5
4,449,744	+		DZA65_RS20625	0.39	-0.2
4,449,744	+		DZA65_RS20625	0.39	-0.5
4,449,744	+		DZA65_RS20625	0.39	+1.7
4,449,744	+		DZA65_RS20625	0.39	-0.3
4,449,744	+		DZA65_RS20625	0.39	-3.3
4,449,744	+		DZA65_RS20625	0.39	-0.7
4,449,745	-		DZA65_RS20625	0.39	+0.5
4,449,745	-		DZA65_RS20625	0.39	-0.1
4,449,745	-		DZA65_RS20625	0.39	+0.2
4,449,745	-		DZA65_RS20625	0.39	-0.2
4,449,745	-		DZA65_RS20625	0.39	+0.3
4,449,745	-		DZA65_RS20625	0.39	-0.8
4,449,783	+		DZA65_RS20625	0.41	+0.5
4,449,783	+		DZA65_RS20625	0.41	-1.0
4,449,783	+		DZA65_RS20625	0.41	-0.8
4,449,783	+		DZA65_RS20625	0.41	-1.1
4,449,783	+		DZA65_RS20625	0.41	-2.7
4,449,783	+		DZA65_RS20625	0.41	+0.2
4,449,784	-		DZA65_RS20625	0.41	-0.5