Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20125

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,360,304	+		DZA65_RS20120	0.49	-2.8
4,360,304	+		DZA65_RS20120	0.49	-0.5
4,360,304	+		DZA65_RS20120	0.49	+2.1
4,360,304	+		DZA65_RS20120	0.49	-1.1
4,360,304	+		DZA65_RS20120	0.49	-0.3
4,360,305	-		DZA65_RS20120	0.49	-0.1
4,360,322	+		DZA65_RS20120	0.50	-1.6
4,360,322	+		DZA65_RS20120	0.50	-0.8
4,360,322	+		DZA65_RS20120	0.50	+0.1
4,360,322	+		DZA65_RS20120	0.50	-3.0
4,360,323	-		DZA65_RS20120	0.50	-0.1
4,360,323	-		DZA65_RS20120	0.50	-0.4
4,360,379	+		DZA65_RS20120	0.54	-0.9
4,360,379	+		DZA65_RS20120	0.54	+0.3
4,360,379	+		DZA65_RS20120	0.54	-0.5
4,360,379	+		DZA65_RS20120	0.54	+0.1
4,360,379	+		DZA65_RS20120	0.54	+0.7
4,360,380	-		DZA65_RS20120	0.54	-1.0
4,360,380	-		DZA65_RS20120	0.54	+0.5
4,360,380	-		DZA65_RS20120	0.54	+1.8
4,360,380	-		DZA65_RS20120	0.54	-0.3
4,360,476	-		DZA65_RS20120	0.60	+0.2
4,360,530	+		DZA65_RS20120	0.64	-1.4
4,360,530	+		DZA65_RS20120	0.64	+0.1
4,360,531	-		DZA65_RS20120	0.64	+0.5
4,360,531	-		DZA65_RS20120	0.64	+0.0
4,360,531	-		DZA65_RS20120	0.64	-1.2
4,360,565	+		DZA65_RS20120	0.66	-0.3
4,360,565	+		DZA65_RS20120	0.66	-0.2
4,360,565	+		DZA65_RS20120	0.66	+0.9
4,360,565	+		DZA65_RS20120	0.66	+0.5
4,360,565	+		DZA65_RS20120	0.66	-1.1
4,360,566	-		DZA65_RS20120	0.66	+1.2
4,360,566	-		DZA65_RS20120	0.66	+0.6
4,360,566	-		DZA65_RS20120	0.66	-1.3
4,360,566	-		DZA65_RS20120	0.66	-0.5
4,360,566	-		DZA65_RS20120	0.66	-1.7
4,360,566	-		DZA65_RS20120	0.66	+0.1
4,360,566	-		DZA65_RS20120	0.66	+0.1
4,360,588	+		DZA65_RS20120	0.67	-1.1
4,360,588	+		DZA65_RS20120	0.67	+1.5
4,360,588	+		DZA65_RS20120	0.67	-0.7
4,360,588	+		DZA65_RS20120	0.67	-0.3
4,360,664	+		DZA65_RS20120	0.72	-2.1
4,360,665	-		DZA65_RS20120	0.72	+1.2
4,360,690	-		DZA65_RS20120	0.74	-0.4
4,360,724	+		DZA65_RS20120	0.76	-0.8
4,360,724	+		DZA65_RS20120	0.76	+0.5
4,360,724	+		DZA65_RS20120	0.76	+0.8
4,360,724	+		DZA65_RS20120	0.76	+0.5
4,360,725	-		DZA65_RS20120	0.76	-0.9
4,360,728	+		DZA65_RS20120	0.76	-1.8
4,360,728	+		DZA65_RS20120	0.76	+0.5
4,360,826	+		DZA65_RS20120	0.83	-0.2
4,360,826	+		DZA65_RS20120	0.83	-0.3
4,360,826	+		DZA65_RS20120	0.83	-0.1
4,360,827	-		DZA65_RS20120	0.83	-0.5
4,360,827	-		DZA65_RS20120	0.83	-0.5
4,360,827	-		DZA65_RS20120	0.83	-0.3
4,360,827	-		DZA65_RS20120	0.83	-1.1
4,360,827	-		DZA65_RS20120	0.83	+0.1
4,360,874	+		DZA65_RS20120	0.86	-2.1
4,360,875	-		DZA65_RS20120	0.86	-0.2
4,360,875	-		DZA65_RS20120	0.86	-0.3
4,360,893	+		DZA65_RS20120	0.87	-1.5
4,360,894	-		DZA65_RS20120	0.87	+2.1
4,360,894	-		DZA65_RS20120	0.87	+1.3
4,360,895	+		DZA65_RS20120	0.87	-0.1
4,360,895	+		DZA65_RS20120	0.87	+0.4
4,360,942	-				+0.5
4,360,963	+				+0.9
4,360,982	-				-0.9
4,361,013	+				-0.9
4,361,013	+				+0.2
4,361,016	+				+0.1
4,361,016	+				-0.4
4,361,016	+				+0.1
4,361,016	+				+1.5
4,361,021	+				+0.5
4,361,022	-				-0.1
4,361,022	-				+1.5
4,361,022	-				-2.2
4,361,079	+				+0.7
4,361,085	+				+0.3
4,361,130	-				-1.7
4,361,147	-				+2.2
4,361,147	-				+1.9
4,361,172	+				+0.5
4,361,183	+				+1.5
4,361,183	+				+1.4
4,361,184	-				+0.3
4,361,185	+				+0.1
4,361,185	+				+0.1
4,361,185	+				-0.3
4,361,186	-				+2.2
4,361,225	+				+0.9
4,361,226	-				-0.4
4,361,240	+				+0.8
4,361,240	+				+0.1
4,361,241	-				-0.8
4,361,346	+		DZA65_RS20125	0.16	+0.0
4,361,347	-		DZA65_RS20125	0.16	-0.4
4,361,347	-		DZA65_RS20125	0.16	-0.1
4,361,347	-		DZA65_RS20125	0.16	-0.9
4,361,411	-		DZA65_RS20125	0.23	+0.7
4,361,417	+		DZA65_RS20125	0.24	-0.3
4,361,417	+		DZA65_RS20125	0.24	-2.7
4,361,418	-		DZA65_RS20125	0.24	+0.8
4,361,418	-		DZA65_RS20125	0.24	+0.0
4,361,418	-		DZA65_RS20125	0.24	+1.3
4,361,436	-		DZA65_RS20125	0.26	+0.3
4,361,441	+		DZA65_RS20125	0.26	-2.7
4,361,441	+		DZA65_RS20125	0.26	+0.9
4,361,442	-		DZA65_RS20125	0.26	+0.5
4,361,442	-		DZA65_RS20125	0.26	+0.8
4,361,442	-		DZA65_RS20125	0.26	-1.1
4,361,442	-		DZA65_RS20125	0.26	+0.7
4,361,442	-		DZA65_RS20125	0.26	+0.4
4,361,442	-		DZA65_RS20125	0.26	+0.6
4,361,480	+		DZA65_RS20125	0.30	-1.2
4,361,480	+		DZA65_RS20125	0.30	+1.6
4,361,480	+		DZA65_RS20125	0.30	+1.5
4,361,480	+		DZA65_RS20125	0.30	+0.3
4,361,480	+		DZA65_RS20125	0.30	-0.1
4,361,480	+		DZA65_RS20125	0.30	-1.1
4,361,480	+		DZA65_RS20125	0.30	+0.2
4,361,480	+		DZA65_RS20125	0.30	+0.3
4,361,480	+		DZA65_RS20125	0.30	-0.6
4,361,480	+		DZA65_RS20125	0.30	+0.9
4,361,481	-		DZA65_RS20125	0.30	+0.9
4,361,481	-		DZA65_RS20125	0.30	-3.0
4,361,481	-		DZA65_RS20125	0.30	+0.3
4,361,481	-		DZA65_RS20125	0.30	-0.5
4,361,481	-		DZA65_RS20125	0.30	-0.2
4,361,481	-		DZA65_RS20125	0.30	+1.2
4,361,481	-		DZA65_RS20125	0.30	-0.7
4,361,481	-		DZA65_RS20125	0.30	+0.9
4,361,481	-		DZA65_RS20125	0.30	+0.8
4,361,481	-		DZA65_RS20125	0.30	-0.8
4,361,483	+		DZA65_RS20125	0.31	+1.5
4,361,483	+		DZA65_RS20125	0.31	+0.2
4,361,483	+		DZA65_RS20125	0.31	-0.8
4,361,484	-		DZA65_RS20125	0.31	-0.5
4,361,484	-		DZA65_RS20125	0.31	+0.3
4,361,484	-		DZA65_RS20125	0.31	-0.1
4,361,484	-		DZA65_RS20125	0.31	+0.8
4,361,486	-		DZA65_RS20125	0.31	-0.6
4,361,516	-		DZA65_RS20125	0.34	-0.1
4,361,516	-		DZA65_RS20125	0.34	+0.8
4,361,577	+		DZA65_RS20125	0.41	-0.5
4,361,578	-		DZA65_RS20125	0.41	+0.9
4,361,578	-		DZA65_RS20125	0.41	+0.8
4,361,596	+		DZA65_RS20125	0.43	-0.9
4,361,597	-		DZA65_RS20125	0.43	+0.5
4,361,598	+		DZA65_RS20125	0.43	-0.5
4,361,598	+		DZA65_RS20125	0.43	+0.7
4,361,599	-		DZA65_RS20125	0.43	+0.8
4,361,599	-		DZA65_RS20125	0.43	-0.9
4,361,599	-		DZA65_RS20125	0.43	-0.5
4,361,624	+		DZA65_RS20125	0.46	+0.8
4,361,624	+		DZA65_RS20125	0.46	+0.4
4,361,624	+		DZA65_RS20125	0.46	-3.1
4,361,624	+		DZA65_RS20125	0.46	-0.9
4,361,624	+		DZA65_RS20125	0.46	-0.5
4,361,624	+		DZA65_RS20125	0.46	+0.1
4,361,624	+		DZA65_RS20125	0.46	+0.5
4,361,625	-		DZA65_RS20125	0.46	+0.5
4,361,628	+		DZA65_RS20125	0.46	+2.0
4,361,628	+		DZA65_RS20125	0.46	+0.5
4,361,629	-		DZA65_RS20125	0.46	+0.1
4,361,629	-		DZA65_RS20125	0.46	-0.0
4,361,629	-		DZA65_RS20125	0.46	-0.2
4,361,629	-		DZA65_RS20125	0.46	-1.8
4,361,629	-		DZA65_RS20125	0.46	-0.6
4,361,632	+		DZA65_RS20125	0.47	+1.0
4,361,632	+		DZA65_RS20125	0.47	-0.8
4,361,632	+		DZA65_RS20125	0.47	+0.0
4,361,632	+		DZA65_RS20125	0.47	+0.2
4,361,632	+		DZA65_RS20125	0.47	-0.5
4,361,632	+		DZA65_RS20125	0.47	-0.1
4,361,632	+		DZA65_RS20125	0.47	+0.4
4,361,633	-		DZA65_RS20125	0.47	+0.1
4,361,633	-		DZA65_RS20125	0.47	-1.3
4,361,633	-		DZA65_RS20125	0.47	-0.8
4,361,633	-		DZA65_RS20125	0.47	+0.3
4,361,633	-		DZA65_RS20125	0.47	-1.8
4,361,633	-		DZA65_RS20125	0.47	+0.0
4,361,757	+		DZA65_RS20125	0.60	-1.1
4,361,757	+		DZA65_RS20125	0.60	-0.6
4,361,758	-		DZA65_RS20125	0.60	-0.5
4,361,758	-		DZA65_RS20125	0.60	+0.2
4,361,758	-		DZA65_RS20125	0.60	-0.1
4,361,771	+		DZA65_RS20125	0.62	-0.1
4,361,772	-		DZA65_RS20125	0.62	-1.7
4,361,772	-		DZA65_RS20125	0.62	+0.1
4,361,878	+		DZA65_RS20125	0.73	+0.6
4,361,879	-		DZA65_RS20125	0.73	-1.6
4,361,879	-		DZA65_RS20125	0.73	-0.3
4,361,961	+		DZA65_RS20125	0.82	+0.8
4,361,962	-		DZA65_RS20125	0.82	+0.2
4,362,007	+		DZA65_RS20125	0.87	+0.0
4,362,008	-		DZA65_RS20125	0.87	-0.4
4,362,010	+		DZA65_RS20125	0.87	-0.4
4,362,010	+		DZA65_RS20125	0.87	+2.0
4,362,010	+		DZA65_RS20125	0.87	-1.6
4,362,010	+		DZA65_RS20125	0.87	+1.8
4,362,011	-		DZA65_RS20125	0.87	+0.2
4,362,011	-		DZA65_RS20125	0.87	+0.7
4,362,011	-		DZA65_RS20125	0.87	-0.7
4,362,011	-		DZA65_RS20125	0.87	-1.1
4,362,011	-		DZA65_RS20125	0.87	-0.9
4,362,016	-		DZA65_RS20125	0.88	-0.3
4,362,071	+				+0.3
4,362,074	+				-0.5
4,362,127	+				-0.2
4,362,128	-				-1.5
4,362,128	-				+0.9
4,362,128	-				-2.5
4,362,132	+				+1.5
4,362,132	+				-0.3
4,362,213	+				-1.7
4,362,218	-				+0.0
4,362,242	-				+0.4
4,362,244	-				-0.5
4,362,276	-				+1.4
4,362,276	-				-0.9
4,362,346	+		DZA65_RS20130	0.14	+0.0
4,362,347	-		DZA65_RS20130	0.14	-1.7
4,362,710	-		DZA65_RS20130	0.57	+0.4
4,362,765	+		DZA65_RS20130	0.63	+0.5
4,362,800	-		DZA65_RS20130	0.67	-1.5
4,362,868	+		DZA65_RS20130	0.75	+0.8
4,362,869	-		DZA65_RS20130	0.75	-3.0
4,362,878	-		DZA65_RS20130	0.76	+0.1
4,362,936	+		DZA65_RS20130	0.83	-0.0
4,362,983	+		DZA65_RS20130	0.89	-0.4
4,362,983	+		DZA65_RS20130	0.89	-0.7
4,362,983	+		DZA65_RS20130	0.89	+0.1
4,362,983	+		DZA65_RS20130	0.89	+0.9
4,363,015	-				-1.3
4,363,041	-				-0.4
4,363,041	-				-0.5
4,363,048	+				-0.8
4,363,057	+				+0.2
4,363,081	+				-0.1
4,363,081	+				-0.5
4,363,081	+				+0.8
4,363,082	-				+0.2
4,363,082	-				-0.8
4,363,089	-				-0.5
4,363,096	-				-0.7