Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19915

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,308,512	+				-0.3
4,308,512	+				+0.2
4,308,549	+				-1.8
4,308,549	+				-0.5
4,308,549	+				-2.1
4,308,550	-				+0.5
4,308,550	-				+0.3
4,308,553	+				-0.3
4,308,554	-				+0.9
4,308,554	-				-1.0
4,308,554	-				-1.0
4,308,589	+				+0.1
4,308,590	-				-0.7
4,308,614	+				-1.1
4,308,640	+				+0.8
4,308,667	-				+1.3
4,308,671	+				+1.8
4,308,672	-				-0.5
4,308,685	+				-0.7
4,308,690	+				-0.2
4,308,716	-				-0.8
4,308,736	+				+0.9
4,308,736	+				+0.3
4,308,737	-				+0.8
4,308,737	-				+0.3
4,308,737	-				-0.9
4,308,784	-				+2.8
4,308,787	+				-0.6
4,308,795	-				-1.1
4,308,842	-				-2.1
4,308,885	+				+0.2
4,308,886	-				-2.1
4,308,887	+				+0.1
4,308,887	+				+0.0
4,308,887	+				+2.5
4,308,887	+				+1.0
4,308,888	-				+1.7
4,308,888	-				+1.0
4,308,888	-				-0.7
4,308,888	-				-1.8
4,308,888	-				-0.6
4,308,948	+				-0.2
4,308,949	-				-0.7
4,309,097	+		DZA65_RS19910	0.24	+0.4
4,309,145	-		DZA65_RS19910	0.33	-0.3
4,309,166	-		DZA65_RS19910	0.36	+0.2
4,309,283	+		DZA65_RS19910	0.58	+0.5
4,309,284	-		DZA65_RS19910	0.58	-0.4
4,309,471	+				+0.1
4,309,471	+				+0.1
4,309,471	+				+1.8
4,309,471	+				+1.8
4,309,471	+				-0.3
4,309,471	+				+0.1
4,309,471	+				+0.1
4,309,471	+				-1.9
4,309,471	+				+1.5
4,309,471	+				+0.2
4,309,471	+				-1.3
4,309,471	+				+1.1
4,309,471	+				+0.5
4,309,471	+				+0.5
4,309,471	+				+0.5
4,309,471	+				-0.1
4,309,471	+				+0.5
4,309,471	+				+1.1
4,309,471	+				-0.5
4,309,472	-				+0.4
4,309,472	-				-1.1
4,309,472	-				-1.3
4,309,472	-				-0.5
4,309,472	-				+1.2
4,309,472	-				+0.0
4,309,472	-				-1.2
4,309,472	-				+0.6
4,309,472	-				-0.3
4,309,472	-				+2.0
4,309,472	-				-0.7
4,309,472	-				+1.0
4,309,472	-				-0.8
4,309,497	-				+2.6
4,309,593	-				-1.8
4,309,593	-				+0.5
4,309,718	+		DZA65_RS19915	0.15	-0.8
4,309,762	+		DZA65_RS19915	0.18	+0.5
4,309,762	+		DZA65_RS19915	0.18	+0.3
4,309,762	+		DZA65_RS19915	0.18	-0.2
4,309,762	+		DZA65_RS19915	0.18	-0.5
4,309,762	+		DZA65_RS19915	0.18	-0.2
4,309,762	+		DZA65_RS19915	0.18	-0.2
4,309,763	-		DZA65_RS19915	0.18	-0.0
4,309,763	-		DZA65_RS19915	0.18	+1.0
4,309,763	-		DZA65_RS19915	0.18	-2.2
4,309,766	+		DZA65_RS19915	0.18	+0.5
4,309,766	+		DZA65_RS19915	0.18	+0.1
4,309,766	+		DZA65_RS19915	0.18	-1.0
4,309,767	-		DZA65_RS19915	0.18	-2.4
4,309,938	+				+2.1
4,309,938	+		DZA65_RS19915	0.31	+0.2
4,309,939	-		DZA65_RS19915	0.31	-1.1
4,309,939	-		DZA65_RS19915	0.31	-0.3
4,309,969	+		DZA65_RS19915	0.33	+0.2
4,309,969	+		DZA65_RS19915	0.33	-0.0
4,309,970	-		DZA65_RS19915	0.33	+1.6
4,309,970	-		DZA65_RS19915	0.33	+0.0
4,309,970	-		DZA65_RS19915	0.33	+0.6
4,310,178	+		DZA65_RS19915	0.48	-0.5
4,310,366	+		DZA65_RS19915	0.61	-0.5
4,310,368	+		DZA65_RS19915	0.61	-0.5
4,310,368	+		DZA65_RS19915	0.61	-2.3
4,310,368	+		DZA65_RS19915	0.61	+1.3
4,310,369	-		DZA65_RS19915	0.61	+0.8
4,310,398	+		DZA65_RS19915	0.64	-0.7
4,310,398	+		DZA65_RS19915	0.64	+0.4
4,310,398	+		DZA65_RS19915	0.64	+0.4
4,310,399	-		DZA65_RS19915	0.64	-0.9
4,310,399	-		DZA65_RS19915	0.64	+0.0
4,310,399	-		DZA65_RS19915	0.64	-1.1
4,310,692	-		DZA65_RS19915	0.85	-0.4
4,310,722	+		DZA65_RS19915	0.87	+0.0
4,310,722	+		DZA65_RS19915	0.87	-0.2
4,310,722	+		DZA65_RS19915	0.87	-2.1
4,310,722	+		DZA65_RS19915	0.87	-1.6
4,310,722	+		DZA65_RS19915	0.87	+0.3
4,310,723	-		DZA65_RS19915	0.87	+0.4
4,310,723	-		DZA65_RS19915	0.87	-0.7
4,310,737	+		DZA65_RS19915	0.88	+0.7
4,310,753	+		DZA65_RS19915	0.89	-0.1
4,310,753	+		DZA65_RS19915	0.89	-0.8
4,310,753	+		DZA65_RS19915	0.89	-0.5
4,310,753	+		DZA65_RS19915	0.89	-2.0
4,310,780	+				+0.5
4,310,781	-				-0.4
4,310,788	+				-2.3
4,310,788	+				-0.2
4,310,789	-				-0.8
4,310,789	-				-0.0
4,310,812	+				-0.5
4,310,813	-				-2.7
4,310,813	-				-2.1
4,310,813	-				-0.1
4,310,852	+				-2.1
4,310,853	-				+1.0
4,310,853	-				+0.5
4,310,917	+				+0.5
4,310,917	+				-0.3
4,310,918	-				+1.1
4,310,936	+				+0.6
4,310,959	-				+1.2
4,310,963	+				-0.9
4,311,037	+				+0.4
4,311,038	-				-1.5
4,311,056	+				-0.6
4,311,056	+				+0.1
4,311,056	+				+2.7
4,311,056	+				-0.1
4,311,057	-				+0.1
4,311,057	-				+2.7
4,311,057	-				-1.7
4,311,092	+				+0.3
4,311,093	-				+0.6
4,311,114	+				+0.5
4,311,114	+				-1.4
4,311,114	+				+0.3
4,311,114	+				-0.4
4,311,114	+				+1.9
4,311,114	+				-1.1
4,311,114	+				-0.2
4,311,115	-				+0.7
4,311,115	-				+0.3
4,311,136	+				-0.6
4,311,136	+				-0.2
4,311,136	+				-0.2
4,311,136	+				-0.2
4,311,136	+				+0.2
4,311,136	+				+0.5
4,311,137	-				+0.8
4,311,137	-				-0.5
4,311,137	-				-0.1
4,311,137	-				-0.7
4,311,158	+				+1.1
4,311,158	+				+1.5
4,311,158	+				+1.5
4,311,159	-				-1.5
4,311,212	-				+0.2
4,311,212	-				+0.4
4,311,224	+				-0.8
4,311,225	-				+0.9
4,311,225	-				+0.2
4,311,225	-				-0.6
4,311,225	-				-1.2
4,311,225	-				+0.5
4,311,225	-				-1.1
4,311,236	+				+1.0
4,311,237	-				-1.1
4,311,237	-				-2.0
4,311,431	+		DZA65_RS19920	0.14	+0.3
4,311,431	+		DZA65_RS19920	0.14	-1.2
4,311,431	+		DZA65_RS19920	0.14	-0.6
4,311,431	+		DZA65_RS19920	0.14	+2.1
4,311,431	+		DZA65_RS19920	0.14	-0.5
4,311,431	+		DZA65_RS19920	0.14	+0.5
4,311,432	-		DZA65_RS19920	0.14	-0.1
4,311,432	-		DZA65_RS19920	0.14	-0.9
4,311,432	-				+2.8
4,311,432	-		DZA65_RS19920	0.14	+0.5
4,311,432	-		DZA65_RS19920	0.14	+0.4
4,311,435	+		DZA65_RS19920	0.14	+2.2
4,311,435	+		DZA65_RS19920	0.14	+0.5
4,311,435	+		DZA65_RS19920	0.14	-1.1
4,311,435	+		DZA65_RS19920	0.14	-0.1
4,311,435	+		DZA65_RS19920	0.14	+0.1
4,311,436	-		DZA65_RS19920	0.14	-2.3
4,311,436	-		DZA65_RS19920	0.14	-0.3
4,311,436	-		DZA65_RS19920	0.14	-2.7
4,311,436	-		DZA65_RS19920	0.14	+0.9
4,311,436	-		DZA65_RS19920	0.14	-1.5
4,311,436	-		DZA65_RS19920	0.14	-0.5
4,311,436	-		DZA65_RS19920	0.14	+2.3
4,311,436	-		DZA65_RS19920	0.14	+0.2
4,311,436	-		DZA65_RS19920	0.14	-1.1
4,311,441	-		DZA65_RS19920	0.15	-0.5
4,311,529	+		DZA65_RS19920	0.20	+1.1
4,311,530	-		DZA65_RS19920	0.20	+0.4
4,311,530	-		DZA65_RS19920	0.20	-1.8
4,311,682	+		DZA65_RS19920	0.30	-1.8
4,311,685	+		DZA65_RS19920	0.30	-1.5
4,311,685	+		DZA65_RS19920	0.30	+2.7
4,311,686	-		DZA65_RS19920	0.30	+1.0
4,311,686	-		DZA65_RS19920	0.30	+0.7
4,311,686	-		DZA65_RS19920	0.30	-0.9
4,311,686	-		DZA65_RS19920	0.30	+0.8
4,311,905	+		DZA65_RS19920	0.44	-0.3
4,311,906	-		DZA65_RS19920	0.44	-0.2