Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18535

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,993,307	+		DZA65_RS18530	0.36	-0.1
3,993,310	+		DZA65_RS18530	0.36	-0.3
3,993,310	+		DZA65_RS18530	0.36	-1.6
3,993,310	+		DZA65_RS18530	0.36	+0.6
3,993,310	+		DZA65_RS18530	0.36	-0.2
3,993,310	+		DZA65_RS18530	0.36	-0.1
3,993,310	+		DZA65_RS18530	0.36	-1.5
3,993,310	+		DZA65_RS18530	0.36	-1.7
3,993,311	-		DZA65_RS18530	0.36	+0.4
3,993,311	-		DZA65_RS18530	0.36	-0.2
3,993,311	-		DZA65_RS18530	0.36	-0.3
3,993,338	+		DZA65_RS18530	0.38	-0.8
3,993,373	+		DZA65_RS18530	0.41	+2.4
3,993,373	+		DZA65_RS18530	0.41	-0.2
3,993,373	+		DZA65_RS18530	0.41	+0.8
3,993,374	-		DZA65_RS18530	0.41	+1.2
3,993,374	-		DZA65_RS18530	0.41	+2.0
3,993,374	-		DZA65_RS18530	0.41	-1.4
3,993,374	-		DZA65_RS18530	0.41	-0.2
3,993,453	+		DZA65_RS18530	0.46	-1.6
3,993,454	-		DZA65_RS18530	0.46	+0.7
3,993,463	+		DZA65_RS18530	0.47	+0.9
3,993,463	+		DZA65_RS18530	0.47	+0.1
3,993,464	-		DZA65_RS18530	0.47	-2.9
3,993,464	-		DZA65_RS18530	0.47	+0.7
3,993,464	-		DZA65_RS18530	0.47	-0.8
3,993,464	-		DZA65_RS18530	0.47	-1.9
3,993,464	-		DZA65_RS18530	0.47	+0.0
3,993,464	-		DZA65_RS18530	0.47	+2.0
3,993,464	-		DZA65_RS18530	0.47	-0.2
3,993,464	-		DZA65_RS18530	0.47	-0.1
3,993,464	-		DZA65_RS18530	0.47	-0.0
3,993,475	+		DZA65_RS18530	0.48	-3.3
3,993,476	-		DZA65_RS18530	0.48	-1.9
3,993,476	-		DZA65_RS18530	0.48	-0.2
3,993,476	-		DZA65_RS18530	0.48	-0.7
3,993,476	-		DZA65_RS18530	0.48	+0.1
3,993,520	+		DZA65_RS18530	0.51	-0.6
3,993,520	+		DZA65_RS18530	0.51	+0.4
3,993,572	-		DZA65_RS18530	0.55	-2.9
3,993,685	+		DZA65_RS18530	0.62	-1.2
3,993,749	-		DZA65_RS18530	0.67	+0.4
3,993,772	+		DZA65_RS18530	0.69	+0.6
3,993,817	+		DZA65_RS18530	0.72	+0.4
3,993,817	+		DZA65_RS18530	0.72	+0.1
3,993,817	+		DZA65_RS18530	0.72	+0.1
3,993,817	+		DZA65_RS18530	0.72	+0.4
3,993,817	+		DZA65_RS18530	0.72	-1.2
3,993,818	-		DZA65_RS18530	0.72	+0.1
3,993,818	-		DZA65_RS18530	0.72	+0.6
3,993,818	-		DZA65_RS18530	0.72	-1.2
3,993,847	+		DZA65_RS18530	0.74	+1.0
3,993,847	+		DZA65_RS18530	0.74	+0.0
3,993,847	+		DZA65_RS18530	0.74	-1.7
3,993,847	+		DZA65_RS18530	0.74	-0.9
3,993,847	+		DZA65_RS18530	0.74	-0.7
3,993,847	+		DZA65_RS18530	0.74	-0.0
3,993,847	+		DZA65_RS18530	0.74	+1.8
3,993,848	-		DZA65_RS18530	0.74	+0.4
3,993,848	-		DZA65_RS18530	0.74	-1.0
3,993,848	-		DZA65_RS18530	0.74	+0.4
3,993,848	-		DZA65_RS18530	0.74	+0.7
3,993,848	-		DZA65_RS18530	0.74	+0.2
3,993,848	-		DZA65_RS18530	0.74	+1.6
3,993,848	-		DZA65_RS18530	0.74	+0.2
3,993,848	-		DZA65_RS18530	0.74	+0.4
3,993,848	-		DZA65_RS18530	0.74	+0.6
3,993,913	+		DZA65_RS18530	0.78	-1.9
3,993,913	+		DZA65_RS18530	0.78	+0.4
3,993,913	+		DZA65_RS18530	0.78	+0.6
3,993,913	+		DZA65_RS18530	0.78	-0.7
3,993,914	-		DZA65_RS18530	0.78	-1.2
3,993,914	-		DZA65_RS18530	0.78	-0.4
3,993,914	-		DZA65_RS18530	0.78	+0.4
3,993,914	-		DZA65_RS18530	0.78	+0.9
3,993,914	-		DZA65_RS18530	0.78	-3.4
3,993,922	+		DZA65_RS18530	0.79	-1.2
3,993,922	+		DZA65_RS18530	0.79	-0.9
3,993,922	+				+2.2
3,993,922	+		DZA65_RS18530	0.79	+0.2
3,993,923	-		DZA65_RS18530	0.79	-0.8
3,993,950	-		DZA65_RS18530	0.81	-1.4
3,994,042	+		DZA65_RS18530	0.87	+0.1
3,994,042	+		DZA65_RS18530	0.87	-1.0
3,994,042	+		DZA65_RS18530	0.87	+0.8
3,994,043	-		DZA65_RS18530	0.87	-1.6
3,994,043	-		DZA65_RS18530	0.87	-0.7
3,994,102	+				+0.4
3,994,103	-				+0.1
3,994,117	+				+0.8
3,994,117	+				-0.2
3,994,117	+				+0.8
3,994,117	+				+1.1
3,994,187	+				+0.4
3,994,187	+				-2.0
3,994,187	+				-0.4
3,994,187	+				+0.9
3,994,187	+				-1.2
3,994,187	+				+1.8
3,994,212	+				-0.0
3,994,356	+				-0.2
3,994,357	-				-0.2
3,994,357	-				+1.1
3,994,409	-		DZA65_RS18535	0.11	+0.2
3,994,409	-				+0.4
3,994,436	-		DZA65_RS18535	0.13	+0.3
3,994,438	+		DZA65_RS18535	0.13	+0.1
3,994,565	-		DZA65_RS18535	0.22	+2.0
3,994,660	+		DZA65_RS18535	0.30	-0.3
3,994,722	+		DZA65_RS18535	0.34	+0.3
3,994,722	+		DZA65_RS18535	0.34	-0.4
3,994,722	+		DZA65_RS18535	0.34	-1.2
3,994,722	+				+3.2
3,994,722	+		DZA65_RS18535	0.34	+3.6
3,994,722	+		DZA65_RS18535	0.34	+1.2
3,994,722	+		DZA65_RS18535	0.34	+1.8
3,994,722	+		DZA65_RS18535	0.34	+1.9
3,994,722	+		DZA65_RS18535	0.34	-0.9
3,994,722	+		DZA65_RS18535	0.34	+0.4
3,994,722	+		DZA65_RS18535	0.34	-2.4
3,994,722	+		DZA65_RS18535	0.34	+0.0
3,994,722	+		DZA65_RS18535	0.34	+1.5
3,994,722	+		DZA65_RS18535	0.34	-0.8
3,994,723	-		DZA65_RS18535	0.34	+0.9
3,994,723	-		DZA65_RS18535	0.34	-1.4
3,994,723	-		DZA65_RS18535	0.34	+0.2
3,994,723	-		DZA65_RS18535	0.34	-0.5
3,994,723	-		DZA65_RS18535	0.34	+1.0
3,994,723	-		DZA65_RS18535	0.34	-1.0
3,994,723	-		DZA65_RS18535	0.34	-0.2
3,994,723	-		DZA65_RS18535	0.34	-1.2
3,994,723	-		DZA65_RS18535	0.34	-0.4
3,994,723	-				+2.4
3,994,723	-		DZA65_RS18535	0.34	+0.0
3,994,723	-		DZA65_RS18535	0.34	+0.4
3,994,723	-		DZA65_RS18535	0.34	-0.6
3,994,723	-		DZA65_RS18535	0.34	-0.8
3,994,790	+		DZA65_RS18535	0.39	-0.3
3,994,798	+				+2.4
3,994,947	+		DZA65_RS18535	0.51	-0.2
3,994,947	+		DZA65_RS18535	0.51	+1.1
3,994,947	+		DZA65_RS18535	0.51	-1.4
3,994,947	+		DZA65_RS18535	0.51	-0.4
3,994,947	+		DZA65_RS18535	0.51	+0.9
3,994,947	+		DZA65_RS18535	0.51	+0.3
3,994,947	+		DZA65_RS18535	0.51	-0.2
3,994,948	-		DZA65_RS18535	0.51	-1.7
3,994,948	-		DZA65_RS18535	0.51	+0.4
3,994,948	-		DZA65_RS18535	0.51	+0.3
3,994,948	-		DZA65_RS18535	0.51	-0.5
3,994,948	-				-0.9
3,994,948	-		DZA65_RS18535	0.51	+0.9
3,994,948	-		DZA65_RS18535	0.51	+0.6
3,994,948	-		DZA65_RS18535	0.51	-0.6
3,994,948	-		DZA65_RS18535	0.51	-1.6
3,994,948	-		DZA65_RS18535	0.51	-0.4
3,994,948	-		DZA65_RS18535	0.51	+0.4
3,994,948	-				+1.4
3,994,948	-		DZA65_RS18535	0.51	+0.7
3,994,948	-		DZA65_RS18535	0.51	-0.3
3,994,948	-		DZA65_RS18535	0.51	-0.3
3,994,948	-		DZA65_RS18535	0.51	+0.5
3,994,959	+		DZA65_RS18535	0.52	-0.2
3,994,959	+		DZA65_RS18535	0.52	+0.8
3,994,959	+		DZA65_RS18535	0.52	-0.3
3,994,959	+		DZA65_RS18535	0.52	+1.4
3,994,959	+		DZA65_RS18535	0.52	+0.9
3,994,960	-		DZA65_RS18535	0.52	-0.1
3,994,960	-		DZA65_RS18535	0.52	+1.4
3,994,960	-		DZA65_RS18535	0.52	-1.2
3,994,965	+		DZA65_RS18535	0.52	-1.2
3,994,965	+		DZA65_RS18535	0.52	-0.4
3,994,965	+		DZA65_RS18535	0.52	+0.0
3,994,965	+		DZA65_RS18535	0.52	+0.5
3,994,965	+		DZA65_RS18535	0.52	+1.8
3,994,965	+		DZA65_RS18535	0.52	+0.0
3,994,965	+		DZA65_RS18535	0.52	-0.3
3,994,965	+		DZA65_RS18535	0.52	+1.3
3,994,965	+		DZA65_RS18535	0.52	+0.0
3,994,965	+		DZA65_RS18535	0.52	+0.0
3,994,966	-		DZA65_RS18535	0.52	+0.4
3,994,966	-		DZA65_RS18535	0.52	+1.3
3,994,966	-		DZA65_RS18535	0.52	+0.1
3,994,966	-		DZA65_RS18535	0.52	+0.5
3,994,966	-		DZA65_RS18535	0.52	+1.6
3,994,966	-		DZA65_RS18535	0.52	-1.2
3,994,990	+		DZA65_RS18535	0.54	+1.7
3,994,991	-		DZA65_RS18535	0.54	+1.1
3,995,121	+		DZA65_RS18535	0.64	-0.3
3,995,122	-		DZA65_RS18535	0.64	-0.8
3,995,234	-		DZA65_RS18535	0.72	-0.3
3,995,260	+		DZA65_RS18535	0.74	-0.4
3,995,260	+		DZA65_RS18535	0.74	+0.6
3,995,261	-		DZA65_RS18535	0.74	+1.9
3,995,261	-		DZA65_RS18535	0.74	-0.3
3,995,261	-		DZA65_RS18535	0.74	+0.4
3,995,330	+		DZA65_RS18535	0.79	-0.1
3,995,373	+		DZA65_RS18535	0.82	+1.3
3,995,373	+		DZA65_RS18535	0.82	+0.2
3,995,374	-		DZA65_RS18535	0.83	-0.2
3,995,374	-		DZA65_RS18535	0.83	-0.1
3,995,374	-		DZA65_RS18535	0.83	+0.1
3,995,377	+		DZA65_RS18535	0.83	+0.9
3,995,377	+		DZA65_RS18535	0.83	+0.5
3,995,377	+		DZA65_RS18535	0.83	+0.3
3,995,377	+		DZA65_RS18535	0.83	-1.0
3,995,377	+		DZA65_RS18535	0.83	-0.8
3,995,377	+		DZA65_RS18535	0.83	+0.6
3,995,377	+		DZA65_RS18535	0.83	+0.8
3,995,378	-		DZA65_RS18535	0.83	+0.4
3,995,378	-		DZA65_RS18535	0.83	+0.7
3,995,398	+		DZA65_RS18535	0.84	-2.0
3,995,461	+		DZA65_RS18535	0.89	+0.3
3,995,461	+		DZA65_RS18535	0.89	-0.6
3,995,462	-		DZA65_RS18535	0.89	+0.0
3,995,541	+				+0.8
3,995,541	+				-1.0
3,995,541	+				-0.4
3,995,541	+				+0.2
3,995,542	-				-0.5
3,995,542	-				+0.1
3,995,542	-				+0.6
3,995,542	-				-0.6
3,995,542	-				+1.1
3,995,879	+		DZA65_RS18540	0.10	+1.8
3,995,879	+		DZA65_RS18540	0.10	-1.3
3,995,879	+		DZA65_RS18540	0.10	-0.6
3,995,880	-		DZA65_RS18540	0.11	+0.4
3,995,880	-		DZA65_RS18540	0.11	+0.2
3,995,880	-		DZA65_RS18540	0.11	-0.1
3,996,066	+		DZA65_RS18540	0.68	+0.4
3,996,067	-		DZA65_RS18540	0.68	+0.5
3,996,067	-		DZA65_RS18540	0.68	-0.0
3,996,071	+		DZA65_RS18540	0.69	+0.9
3,996,071	+		DZA65_RS18540	0.69	+1.1
3,996,071	+		DZA65_RS18540	0.69	+0.2
3,996,071	+		DZA65_RS18540	0.69	-0.1
3,996,071	+		DZA65_RS18540	0.69	-0.1
3,996,072	-		DZA65_RS18540	0.69	+0.7
3,996,072	-		DZA65_RS18540	0.69	-0.3
3,996,104	+		DZA65_RS18540	0.79	+0.4
3,996,104	+		DZA65_RS18540	0.79	+0.3
3,996,104	+		DZA65_RS18540	0.79	-1.6
3,996,104	+		DZA65_RS18540	0.79	-0.1
3,996,104	+		DZA65_RS18540	0.79	-0.6
3,996,104	+		DZA65_RS18540	0.79	+0.4
3,996,104	+		DZA65_RS18540	0.79	-0.7
3,996,105	-		DZA65_RS18540	0.80	-0.6
3,996,105	-		DZA65_RS18540	0.80	+0.0
3,996,105	-		DZA65_RS18540	0.80	+0.4
3,996,105	-		DZA65_RS18540	0.80	+0.0
3,996,105	-		DZA65_RS18540	0.80	+0.6
3,996,105	-		DZA65_RS18540	0.80	-1.8
3,996,105	-				-0.1
3,996,176	+				-0.0
3,996,176	+				+1.0
3,996,176	+				-2.7
3,996,176	+				-0.6
3,996,176	+				+1.3
3,996,176	+				+0.0
3,996,177	-				-0.4
3,996,177	-				-0.0
3,996,177	-				+0.9
3,996,177	-				+0.4
3,996,177	-				+0.9
3,996,177	-				-0.6
3,996,177	-				-1.2
3,996,177	-				+1.3
3,996,177	-				-1.1
3,996,177	-				-2.4
3,996,198	+				+1.3
3,996,198	+				+0.5
3,996,198	+				+2.2
3,996,198	+				-2.1
3,996,198	+				-0.3
3,996,198	+				-1.1
3,996,198	+				-1.6
3,996,199	-				-0.9
3,996,199	-				-0.7
3,996,199	-				+0.9
3,996,199	-				-0.9
3,996,199	-				+2.8
3,996,199	-				+0.4
3,996,220	+				-0.2
3,996,220	+				+0.1
3,996,220	+				+0.3
3,996,220	+				+0.1
3,996,221	-				+0.4
3,996,221	-				-1.1
3,996,221	-				-0.0
3,996,221	-				+0.9
3,996,221	-				+0.4
3,996,221	-				+0.3
3,996,221	-				-0.1
3,996,269	+				+0.5
3,996,269	+				-0.9
3,996,269	+				+0.9
3,996,270	-				-2.1
3,996,270	-				+1.1
3,996,270	-				+0.8
3,996,307	+				+0.6
3,996,307	+				-1.0
3,996,307	+				+1.2
3,996,307	+				+0.0
3,996,307	+				+0.7
3,996,308	-				-1.6
3,996,308	-				+0.4
3,996,308	-				+0.1
3,996,310	+				-1.0
3,996,310	+				+0.5
3,996,310	+				+0.6
3,996,310	+				-0.3
3,996,310	+				-0.2
3,996,310	+				-2.1
3,996,310	+				-0.2
3,996,310	+				-0.9
3,996,310	+				-1.0
3,996,311	-				+0.1
3,996,311	-				-0.4
3,996,311	-				-0.4
3,996,311	-				-0.5
3,996,311	-				-2.6
3,996,311	-				+0.0
3,996,456	-				+0.3
3,996,552	+		DZA65_RS18545	0.18	+0.0
3,996,553	-		DZA65_RS18545	0.18	-1.1
3,996,553	-		DZA65_RS18545	0.18	-0.7
3,996,553	-		DZA65_RS18545	0.18	-2.4
3,996,553	-		DZA65_RS18545	0.18	-1.0
3,996,553	-		DZA65_RS18545	0.18	+0.3