Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18150

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,908,354	+		DZA65_RS18145	0.57	-1.6
3,908,381	+		DZA65_RS18145	0.58	-0.1
3,908,381	+		DZA65_RS18145	0.58	-2.2
3,908,381	+		DZA65_RS18145	0.58	-2.2
3,908,381	+		DZA65_RS18145	0.58	-0.9
3,908,381	+		DZA65_RS18145	0.58	-0.3
3,908,381	+		DZA65_RS18145	0.58	-1.8
3,908,382	-				-1.2
3,908,382	-		DZA65_RS18145	0.59	-0.3
3,908,382	-				-1.9
3,908,382	-		DZA65_RS18145	0.59	-1.0
3,908,418	+		DZA65_RS18145	0.60	-1.6
3,908,419	-		DZA65_RS18145	0.60	-0.8
3,908,441	+		DZA65_RS18145	0.61	-2.4
3,908,441	+		DZA65_RS18145	0.61	-1.6
3,908,441	+				-0.9
3,908,442	-		DZA65_RS18145	0.61	-0.9
3,908,540	+		DZA65_RS18145	0.66	+0.0
3,908,541	-		DZA65_RS18145	0.66	-1.2
3,908,541	-				-0.6
3,908,541	-		DZA65_RS18145	0.66	-1.9
3,908,541	-		DZA65_RS18145	0.66	+0.6
3,908,541	-		DZA65_RS18145	0.66	-0.3
3,908,541	-		DZA65_RS18145	0.66	-1.9
3,908,541	-		DZA65_RS18145	0.66	-1.9
3,908,541	-		DZA65_RS18145	0.66	+1.0
3,908,561	+		DZA65_RS18145	0.67	-2.0
3,908,562	-		DZA65_RS18145	0.67	-1.5
3,908,627	+		DZA65_RS18145	0.69	-1.7
3,908,627	+		DZA65_RS18145	0.69	-1.9
3,908,627	+		DZA65_RS18145	0.69	+0.4
3,908,627	+		DZA65_RS18145	0.69	-3.6
3,908,627	+		DZA65_RS18145	0.69	-1.4
3,908,628	-		DZA65_RS18145	0.70	-2.7
3,908,628	-		DZA65_RS18145	0.70	-2.7
3,908,628	-		DZA65_RS18145	0.70	-1.4
3,908,628	-		DZA65_RS18145	0.70	-3.0
3,908,628	-		DZA65_RS18145	0.70	-1.4
3,908,628	-		DZA65_RS18145	0.70	-0.6
3,908,678	+		DZA65_RS18145	0.72	-2.4
3,908,679	-		DZA65_RS18145	0.72	+0.3
3,908,679	-		DZA65_RS18145	0.72	-0.7
3,908,679	-		DZA65_RS18145	0.72	-2.3
3,908,696	+		DZA65_RS18145	0.73	-0.6
3,908,765	+		DZA65_RS18145	0.76	-2.6
3,908,765	+		DZA65_RS18145	0.76	+0.8
3,908,765	+		DZA65_RS18145	0.76	-2.0
3,908,765	+		DZA65_RS18145	0.76	-2.9
3,908,765	+		DZA65_RS18145	0.76	-3.0
3,908,765	+		DZA65_RS18145	0.76	-2.4
3,908,765	+		DZA65_RS18145	0.76	-4.0
3,908,765	+		DZA65_RS18145	0.76	-2.4
3,908,765	+		DZA65_RS18145	0.76	-0.9
3,908,765	+		DZA65_RS18145	0.76	-0.8
3,908,765	+		DZA65_RS18145	0.76	-0.2
3,908,765	+				-1.2
3,908,765	+		DZA65_RS18145	0.76	-2.6
3,908,765	+		DZA65_RS18145	0.76	-2.8
3,908,765	+		DZA65_RS18145	0.76	-0.6
3,908,766	-		DZA65_RS18145	0.76	-3.6
3,908,766	-		DZA65_RS18145	0.76	-1.2
3,908,766	-		DZA65_RS18145	0.76	-2.9
3,908,766	-		DZA65_RS18145	0.76	-2.9
3,908,766	-		DZA65_RS18145	0.76	-0.1
3,908,766	-		DZA65_RS18145	0.76	-1.9
3,908,766	-		DZA65_RS18145	0.76	-0.6
3,908,766	-		DZA65_RS18145	0.76	-1.3
3,908,766	-		DZA65_RS18145	0.76	-1.9
3,908,766	-		DZA65_RS18145	0.76	-2.4
3,908,766	-		DZA65_RS18145	0.76	-1.3
3,908,766	-		DZA65_RS18145	0.76	-1.4
3,908,769	+		DZA65_RS18145	0.76	+0.2
3,908,769	+		DZA65_RS18145	0.76	-1.9
3,908,769	+		DZA65_RS18145	0.76	-1.5
3,908,769	+		DZA65_RS18145	0.76	-1.0
3,908,770	-		DZA65_RS18145	0.76	-3.4
3,908,770	-		DZA65_RS18145	0.76	+0.2
3,908,770	-		DZA65_RS18145	0.76	-2.0
3,908,775	+		DZA65_RS18145	0.76	-1.5
3,908,776	-		DZA65_RS18145	0.76	+0.3
3,908,776	-		DZA65_RS18145	0.76	-1.3
3,908,776	-		DZA65_RS18145	0.76	-2.9
3,908,898	+		DZA65_RS18145	0.82	-1.4
3,908,898	+		DZA65_RS18145	0.82	-1.8
3,908,899	-		DZA65_RS18145	0.82	-3.1
3,908,899	-		DZA65_RS18145	0.82	+0.2
3,908,899	-		DZA65_RS18145	0.82	-0.6
3,908,952	+		DZA65_RS18145	0.84	-1.3
3,908,953	-		DZA65_RS18145	0.84	-1.7
3,908,973	+		DZA65_RS18145	0.85	-2.3
3,909,088	-				-0.6
3,909,088	-				-2.6
3,909,226	-				-1.7
3,909,226	-				-0.8
3,909,226	-				-0.8
3,909,226	-				-1.6
3,909,279	+				-0.3
3,909,299	-				-2.4
3,909,309	+				-3.2
3,909,309	+				-1.0
3,909,320	+				-0.8
3,909,378	+				-1.4
3,909,390	+				+0.8
3,909,390	+				-0.7
3,909,390	+				+0.7
3,909,390	+				-1.0
3,909,390	+				-2.2
3,909,391	-				+1.6
3,909,475	+		DZA65_RS18150	0.12	-0.9
3,909,475	+		DZA65_RS18150	0.12	+1.7
3,909,475	+		DZA65_RS18150	0.12	-0.4
3,909,475	+		DZA65_RS18150	0.12	+0.0
3,909,475	+		DZA65_RS18150	0.12	+1.6
3,909,476	-		DZA65_RS18150	0.12	-2.1
3,909,476	-		DZA65_RS18150	0.12	+0.2
3,909,476	-		DZA65_RS18150	0.12	+0.3
3,909,476	-		DZA65_RS18150	0.12	-1.2
3,909,476	-		DZA65_RS18150	0.12	+0.4
3,909,476	-		DZA65_RS18150	0.12	-0.9
3,909,477	+		DZA65_RS18150	0.12	-0.9
3,909,477	+		DZA65_RS18150	0.12	-0.6
3,909,477	+		DZA65_RS18150	0.12	-0.8
3,909,477	+		DZA65_RS18150	0.12	-0.2
3,909,477	+		DZA65_RS18150	0.12	-0.2
3,909,477	+		DZA65_RS18150	0.12	+0.1
3,909,477	+		DZA65_RS18150	0.12	+0.2
3,909,477	+		DZA65_RS18150	0.12	-2.0
3,909,477	+		DZA65_RS18150	0.12	-0.2
3,909,477	+		DZA65_RS18150	0.12	+0.4
3,909,477	+		DZA65_RS18150	0.12	-0.3
3,909,477	+		DZA65_RS18150	0.12	+0.2
3,909,477	+		DZA65_RS18150	0.12	-1.2
3,909,477	+		DZA65_RS18150	0.12	-0.7
3,909,477	+		DZA65_RS18150	0.12	+1.2
3,909,477	+		DZA65_RS18150	0.12	+0.3
3,909,477	+		DZA65_RS18150	0.12	-0.4
3,909,477	+		DZA65_RS18150	0.12	-0.2
3,909,477	+		DZA65_RS18150	0.12	+0.7
3,909,477	+		DZA65_RS18150	0.12	-1.7
3,909,477	+		DZA65_RS18150	0.12	-0.4
3,909,477	+		DZA65_RS18150	0.12	+0.4
3,909,477	+		DZA65_RS18150	0.12	-0.2
3,909,477	+		DZA65_RS18150	0.12	-0.3
3,909,477	+		DZA65_RS18150	0.12	+0.0
3,909,477	+		DZA65_RS18150	0.12	-1.0
3,909,477	+		DZA65_RS18150	0.12	-1.6
3,909,477	+		DZA65_RS18150	0.12	+0.7
3,909,478	-		DZA65_RS18150	0.12	+0.2
3,909,478	-		DZA65_RS18150	0.12	-0.6
3,909,478	-		DZA65_RS18150	0.12	-0.1
3,909,478	-		DZA65_RS18150	0.12	+0.2
3,909,478	-		DZA65_RS18150	0.12	-2.4
3,909,478	-		DZA65_RS18150	0.12	-2.4
3,909,478	-		DZA65_RS18150	0.12	-0.3
3,909,478	-		DZA65_RS18150	0.12	-0.8
3,909,478	-		DZA65_RS18150	0.12	-1.6
3,909,478	-		DZA65_RS18150	0.12	-0.4
3,909,478	-		DZA65_RS18150	0.12	-0.9
3,909,478	-		DZA65_RS18150	0.12	+0.7
3,909,478	-		DZA65_RS18150	0.12	+0.6
3,909,478	-		DZA65_RS18150	0.12	+0.4
3,909,478	-		DZA65_RS18150	0.12	-1.6
3,909,478	-		DZA65_RS18150	0.12	-0.6
3,909,479	+		DZA65_RS18150	0.12	-1.9
3,909,479	+		DZA65_RS18150	0.12	-3.0
3,909,479	+		DZA65_RS18150	0.12	-0.1
3,909,479	+		DZA65_RS18150	0.12	+0.0
3,909,479	+		DZA65_RS18150	0.12	-0.2
3,909,479	+		DZA65_RS18150	0.12	+0.9
3,909,479	+		DZA65_RS18150	0.12	-0.3
3,909,479	+		DZA65_RS18150	0.12	-3.0
3,909,479	+		DZA65_RS18150	0.12	-2.7
3,909,479	+		DZA65_RS18150	0.12	-0.8
3,909,479	+		DZA65_RS18150	0.12	-0.3
3,909,479	+		DZA65_RS18150	0.12	+0.4
3,909,479	+		DZA65_RS18150	0.12	+0.2
3,909,479	+		DZA65_RS18150	0.12	+0.2
3,909,479	+		DZA65_RS18150	0.12	-0.1
3,909,479	+		DZA65_RS18150	0.12	-0.4
3,909,479	+		DZA65_RS18150	0.12	+0.0
3,909,479	+		DZA65_RS18150	0.12	-0.6
3,909,479	+		DZA65_RS18150	0.12	-1.3
3,909,480	-		DZA65_RS18150	0.12	-0.8
3,909,480	-		DZA65_RS18150	0.12	+0.1
3,909,480	-		DZA65_RS18150	0.12	+0.9
3,909,480	-		DZA65_RS18150	0.12	-0.4
3,909,480	-		DZA65_RS18150	0.12	-0.9
3,909,480	-		DZA65_RS18150	0.12	-0.2
3,909,480	-		DZA65_RS18150	0.12	-0.4
3,909,480	-		DZA65_RS18150	0.12	+0.7
3,909,480	-		DZA65_RS18150	0.12	-0.4
3,909,480	-		DZA65_RS18150	0.12	-0.2
3,909,480	-		DZA65_RS18150	0.12	-1.0
3,909,480	-		DZA65_RS18150	0.12	-2.4
3,909,480	-		DZA65_RS18150	0.12	-0.8
3,909,480	-				-1.9
3,909,480	-		DZA65_RS18150	0.12	-2.0
3,909,480	-		DZA65_RS18150	0.12	+1.0
3,909,480	-		DZA65_RS18150	0.12	-1.7
3,909,480	-		DZA65_RS18150	0.12	-1.2
3,909,480	-		DZA65_RS18150	0.12	+0.4
3,909,480	-		DZA65_RS18150	0.12	-1.6
3,909,480	-		DZA65_RS18150	0.12	+0.3
3,909,480	-		DZA65_RS18150	0.12	-0.7
3,909,480	-		DZA65_RS18150	0.12	-1.2
3,909,480	-		DZA65_RS18150	0.12	+0.1
3,909,480	-		DZA65_RS18150	0.12	+2.2
3,909,480	-		DZA65_RS18150	0.12	+1.0
3,909,480	-		DZA65_RS18150	0.12	-0.9
3,909,480	-		DZA65_RS18150	0.12	-0.1
3,909,480	-		DZA65_RS18150	0.12	-2.6
3,909,480	-		DZA65_RS18150	0.12	-1.5
3,909,480	-		DZA65_RS18150	0.12	+1.0
3,909,556	+		DZA65_RS18150	0.18	+0.9
3,909,556	+		DZA65_RS18150	0.18	-1.2
3,909,556	+		DZA65_RS18150	0.18	-0.5
3,909,561	+		DZA65_RS18150	0.18	-0.7
3,909,562	-		DZA65_RS18150	0.18	-0.2
3,909,620	+		DZA65_RS18150	0.23	-1.0
3,909,620	+		DZA65_RS18150	0.23	+0.6
3,909,862	-		DZA65_RS18150	0.41	+0.2
3,909,890	+		DZA65_RS18150	0.43	-2.9
3,909,964	+		DZA65_RS18150	0.48	-0.1
3,910,204	+		DZA65_RS18150	0.66	-0.3
3,910,226	+		DZA65_RS18150	0.68	+0.4
3,910,226	+		DZA65_RS18150	0.68	-0.3
3,910,226	+		DZA65_RS18150	0.68	-1.6
3,910,226	+		DZA65_RS18150	0.68	+0.8
3,910,226	+		DZA65_RS18150	0.68	-0.7
3,910,226	+		DZA65_RS18150	0.68	+0.9
3,910,226	+		DZA65_RS18150	0.68	+2.0
3,910,226	+		DZA65_RS18150	0.68	-2.2
3,910,227	-		DZA65_RS18150	0.68	+0.4
3,910,227	-		DZA65_RS18150	0.68	-1.6
3,910,229	+		DZA65_RS18150	0.68	-1.3
3,910,229	+		DZA65_RS18150	0.68	-0.6
3,910,229	+		DZA65_RS18150	0.68	+0.9
3,910,229	+		DZA65_RS18150	0.68	-2.9
3,910,229	+		DZA65_RS18150	0.68	+0.2
3,910,229	+		DZA65_RS18150	0.68	-0.3
3,910,229	+		DZA65_RS18150	0.68	+0.5
3,910,229	+		DZA65_RS18150	0.68	+1.0
3,910,229	+		DZA65_RS18150	0.68	+0.9
3,910,229	+		DZA65_RS18150	0.68	+0.6
3,910,229	+		DZA65_RS18150	0.68	-1.6
3,910,230	-		DZA65_RS18150	0.68	-1.6
3,910,231	+		DZA65_RS18150	0.68	-0.4
3,910,231	+		DZA65_RS18150	0.68	+0.4
3,910,231	+		DZA65_RS18150	0.68	+1.1
3,910,231	+		DZA65_RS18150	0.68	+1.8
3,910,232	-		DZA65_RS18150	0.68	-1.2
3,910,232	-		DZA65_RS18150	0.68	-1.8
3,910,232	-		DZA65_RS18150	0.68	-0.9
3,910,232	-		DZA65_RS18150	0.68	-0.5
3,910,262	+		DZA65_RS18150	0.71	+1.6
3,910,262	+		DZA65_RS18150	0.71	+0.4
3,910,262	+		DZA65_RS18150	0.71	-0.6
3,910,263	-		DZA65_RS18150	0.71	+0.7
3,910,534	-				-2.6
3,910,640	+				-1.7
3,910,640	+				+0.2
3,910,641	-				+0.1
3,910,641	-				+0.2
3,910,653	+				-1.6
3,910,653	+				+1.0
3,910,653	+				-0.6
3,910,653	+				+0.2
3,910,653	+				+1.1
3,910,673	+				-0.3
3,910,673	+				+0.7
3,910,673	+				+1.0
3,910,673	+				-0.6
3,910,673	+				-1.0
3,910,674	-				-0.6
3,910,674	-				-1.7
3,910,681	+				+0.4
3,910,691	+				-0.2
3,910,691	+				-0.2
3,910,691	+				-1.7
3,910,691	+				-2.2
3,910,691	+				+0.0
3,910,691	+				-0.5
3,910,692	-				-1.2
3,910,692	-				+0.8
3,910,723	+				-2.2
3,910,723	+				-1.2
3,910,723	+				-1.7
3,910,723	+				-0.6
3,910,724	-				-0.2
3,910,724	-				+2.0
3,910,724	-				+0.7
3,910,740	+				+0.3
3,910,740	+				+0.4
3,910,740	+				-0.6
3,910,740	+				+0.0
3,910,740	+				+0.9
3,910,740	+				+0.5
3,910,740	+				+1.7
3,910,740	+				-0.6
3,910,740	+				+0.0
3,910,740	+				+0.1
3,910,740	+				+0.3
3,910,740	+				+0.6
3,910,740	+				+0.0
3,910,740	+				+0.7
3,910,740	+				-0.2
3,910,741	-				-1.6
3,910,741	-				-0.6
3,910,741	-				-1.6
3,910,741	-				+0.8
3,910,741	-				-0.7
3,910,792	-				+0.7
3,910,813	+				+0.4
3,910,813	+				-0.2
3,910,815	+				-0.6
3,910,815	+				-1.2
3,910,816	-				-0.4
3,910,854	+				-0.6
3,910,854	+				+0.8
3,910,855	-				+0.2
3,910,885	+				+0.4
3,910,885	+				-0.2
3,910,885	+				+1.4
3,910,886	-				-0.6
3,910,886	-				-1.2
3,910,932	+				+0.9
3,910,932	+				-1.0
3,910,932	+				+0.2
3,910,932	+				+0.1
3,910,932	+				-0.2
3,910,932	+				+0.3
3,910,932	+				+1.3
3,910,932	+				-0.4
3,910,932	+				-0.2
3,910,932	+				-2.4
3,910,932	+				-0.0
3,910,932	+				+2.0
3,910,932	+				-0.7
3,910,933	-				+0.2
3,910,933	-				-0.7
3,911,148	+		DZA65_RS18155	0.16	-0.7
3,911,149	-		DZA65_RS18155	0.16	+0.3
3,911,179	+		DZA65_RS18155	0.17	-1.1
3,911,179	+		DZA65_RS18155	0.17	-0.8
3,911,180	-		DZA65_RS18155	0.17	-0.8
3,911,180	-		DZA65_RS18155	0.17	-0.3
3,911,180	-		DZA65_RS18155	0.17	+1.6
3,911,491	+		DZA65_RS18155	0.28	-0.2
3,911,491	+		DZA65_RS18155	0.28	+1.0
3,911,491	+		DZA65_RS18155	0.28	+1.9
3,911,491	+		DZA65_RS18155	0.28	+1.2
3,911,491	+		DZA65_RS18155	0.28	-0.7
3,911,492	-		DZA65_RS18155	0.28	+1.2
3,911,492	-		DZA65_RS18155	0.28	-0.0
3,911,492	-		DZA65_RS18155	0.28	+1.3
3,911,492	-		DZA65_RS18155	0.28	+0.2
3,911,492	-		DZA65_RS18155	0.28	+0.0
3,911,492	-		DZA65_RS18155	0.28	-0.5
3,911,492	-		DZA65_RS18155	0.28	+0.9
3,911,492	-		DZA65_RS18155	0.28	+1.2
3,911,492	-		DZA65_RS18155	0.28	-0.2
3,911,492	-		DZA65_RS18155	0.28	+0.9
3,911,492	-		DZA65_RS18155	0.28	+0.4
3,911,492	-		DZA65_RS18155	0.28	-0.3
3,911,492	-		DZA65_RS18155	0.28	+0.3