Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17935

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,861,212	+		DZA65_RS17930	0.71	-1.6
3,861,213	-		DZA65_RS17930	0.71	-0.8
3,861,352	+		DZA65_RS17930	0.76	+0.0
3,861,400	+		DZA65_RS17930	0.78	+1.4
3,861,401	-		DZA65_RS17930	0.78	+0.9
3,861,584	+		DZA65_RS17930	0.85	+0.6
3,861,585	-		DZA65_RS17930	0.85	-1.1
3,861,585	-		DZA65_RS17930	0.85	-0.8
3,861,585	-		DZA65_RS17930	0.85	-0.4
3,861,585	-		DZA65_RS17930	0.85	-1.7
3,861,587	+		DZA65_RS17930	0.85	-1.4
3,861,588	-		DZA65_RS17930	0.85	-2.0
3,861,593	+		DZA65_RS17930	0.85	-0.0
3,861,593	+		DZA65_RS17930	0.85	+0.4
3,861,616	+		DZA65_RS17930	0.86	+1.0
3,861,637	+		DZA65_RS17930	0.87	+1.4
3,861,637	+		DZA65_RS17930	0.87	+1.0
3,861,638	-		DZA65_RS17930	0.87	-0.8
3,861,673	+		DZA65_RS17930	0.88	+0.6
3,861,674	-		DZA65_RS17930	0.88	+0.4
3,861,674	-		DZA65_RS17930	0.88	+0.1
3,861,674	-		DZA65_RS17930	0.88	-1.4
3,861,674	-		DZA65_RS17930	0.88	-1.6
3,861,674	-		DZA65_RS17930	0.88	-1.9
3,861,681	+		DZA65_RS17930	0.88	-0.3
3,861,681	+		DZA65_RS17930	0.88	+0.1
3,861,681	+		DZA65_RS17930	0.88	+0.1
3,861,748	+				-1.9
3,861,874	+				-0.3
3,861,874	+				-0.9
3,861,874	+				+0.9
3,861,874	+				+0.1
3,861,874	+				+0.3
3,861,875	-				-1.5
3,861,875	-				-0.1
3,861,875	-				-0.8
3,861,875	-				+1.7
3,861,875	-				+0.1
3,862,059	+				+0.1
3,862,059	+				-0.9
3,862,060	-				-1.1
3,862,065	+				-1.4
3,862,065	+				+0.2
3,862,091	+				-0.8
3,862,096	+				-3.1
3,862,096	+				-0.2
3,862,096	+				+1.9
3,862,096	+				-0.4
3,862,096	+				+0.0
3,862,098	+				-0.9
3,862,098	+				+0.6
3,862,098	+				+0.0
3,862,098	+				-1.1
3,862,098	+				-1.0
3,862,098	+				-0.5
3,862,098	+				-0.1
3,862,098	+				-0.7
3,862,098	+				+0.1
3,862,098	+				+0.1
3,862,098	+				-0.8
3,862,098	+				+0.4
3,862,102	+				-1.6
3,862,102	+				-1.1
3,862,102	+				-1.1
3,862,102	+				-2.4
3,863,500	+				-0.8
3,863,501	-				-1.1
3,863,532	+				+0.2
3,863,560	+				-0.9
3,863,560	+				+0.7
3,863,560	+				+0.0
3,863,560	+				+0.6
3,863,561	-				+2.6
3,863,561	-				+0.5
3,863,563	+				+0.4
3,863,563	+				+0.0
3,863,563	+				-0.2
3,863,564	-				-0.9
3,863,564	-				+0.9
3,863,635	+				-2.8
3,863,635	+				-0.9
3,863,635	+				+1.2
3,863,635	+				-0.2
3,863,635	+				+0.4
3,863,636	-				+1.1
3,863,636	-				+0.3
3,863,636	-				-0.7
3,863,638	+				+0.1
3,863,638	+				-1.1
3,863,639	-				+0.2
3,863,639	-				+1.6
3,863,639	-				-0.8
3,863,639	-				-0.8
3,863,639	-				+0.3
3,863,639	-				-1.3
3,863,639	-				+0.8
3,863,731	+		DZA65_RS17940	0.35	+1.1
3,863,732	-		DZA65_RS17940	0.35	+1.0
3,863,838	+		DZA65_RS17940	0.68	-0.0
3,863,838	+		DZA65_RS17940	0.68	-0.1
3,863,838	+		DZA65_RS17940	0.68	+0.0
3,863,839	-		DZA65_RS17940	0.68	-1.6
3,863,839	-		DZA65_RS17940	0.68	+0.1
3,863,839	-		DZA65_RS17940	0.68	+1.0
3,863,859	-		DZA65_RS17940	0.74	-1.6
3,863,921	-				+0.6
3,863,921	-				+0.6
3,863,921	-				+0.1
3,863,921	-				-0.7
3,863,941	-				-0.0
3,864,015	+				+1.0
3,864,015	+				-0.2
3,864,015	+				-1.1
3,864,015	+				-0.5
3,864,015	+				+0.9
3,864,015	+				-1.1
3,864,015	+				+0.7
3,864,015	+				+0.2
3,864,016	-				+0.9
3,864,016	-				+0.3
3,864,016	-				-0.6
3,864,066	+				+0.1
3,864,066	+				+0.4
3,864,066	+				+0.2
3,864,066	+				+0.2
3,864,066	+				+0.2
3,864,067	-				-1.0
3,864,067	-				-0.9
3,864,067	-				+0.4
3,864,067	-				+0.1
3,864,067	-				+1.0
3,864,067	-				+0.4
3,864,067	-				-1.4
3,864,105	+		DZA65_RS17945	0.13	-0.0
3,864,105	+		DZA65_RS17945	0.13	-1.3
3,864,105	+		DZA65_RS17945	0.13	+0.4
3,864,105	+		DZA65_RS17945	0.13	-2.1
3,864,106	-		DZA65_RS17945	0.13	+1.3
3,864,106	-		DZA65_RS17945	0.13	+0.4
3,864,106	-		DZA65_RS17945	0.13	+0.8
3,864,106	-		DZA65_RS17945	0.13	+1.3
3,864,106	-		DZA65_RS17945	0.13	+0.8
3,864,131	+		DZA65_RS17945	0.15	-1.9
3,864,132	-		DZA65_RS17945	0.15	-0.5
3,864,178	+		DZA65_RS17945	0.18	+0.4
3,864,180	+				+0.4
3,864,180	+		DZA65_RS17945	0.19	-0.3
3,864,180	+		DZA65_RS17945	0.19	+1.2
3,864,180	+		DZA65_RS17945	0.19	-1.6
3,864,180	+		DZA65_RS17945	0.19	+0.2
3,864,181	-		DZA65_RS17945	0.19	+0.4
3,864,181	-		DZA65_RS17945	0.19	+0.9
3,864,239	+		DZA65_RS17945	0.23	-1.9
3,864,433	-		DZA65_RS17945	0.38	+1.3
3,864,433	-		DZA65_RS17945	0.38	-0.1
3,864,433	-		DZA65_RS17945	0.38	+0.1
3,864,433	-		DZA65_RS17945	0.38	+2.3
3,864,442	+		DZA65_RS17945	0.39	-1.1
3,864,442	+		DZA65_RS17945	0.39	-0.6
3,864,442	+		DZA65_RS17945	0.39	+0.4
3,864,443	-		DZA65_RS17945	0.39	-0.4
3,864,443	-		DZA65_RS17945	0.39	-1.0
3,864,443	-		DZA65_RS17945	0.39	-1.2
3,864,444	+				-0.1
3,864,444	+		DZA65_RS17945	0.39	-1.3
3,864,444	+		DZA65_RS17945	0.39	+0.5
3,864,444	+		DZA65_RS17945	0.39	+0.8
3,864,444	+		DZA65_RS17945	0.39	+0.5
3,864,444	+		DZA65_RS17945	0.39	-1.4
3,864,444	+		DZA65_RS17945	0.39	-0.1
3,864,444	+		DZA65_RS17945	0.39	+1.0
3,864,444	+		DZA65_RS17945	0.39	+0.0
3,864,444	+		DZA65_RS17945	0.39	+1.2
3,864,444	+		DZA65_RS17945	0.39	+0.6
3,864,444	+		DZA65_RS17945	0.39	-0.6
3,864,444	+		DZA65_RS17945	0.39	-0.3
3,864,444	+		DZA65_RS17945	0.39	+1.0
3,864,445	-		DZA65_RS17945	0.39	-0.3
3,864,445	-		DZA65_RS17945	0.39	+3.1
3,864,445	-		DZA65_RS17945	0.39	-0.4
3,864,445	-		DZA65_RS17945	0.39	-1.7
3,864,445	-		DZA65_RS17945	0.39	-1.1
3,864,445	-		DZA65_RS17945	0.39	+0.1
3,864,445	-		DZA65_RS17945	0.39	-0.0
3,864,445	-		DZA65_RS17945	0.39	-0.4
3,864,445	-		DZA65_RS17945	0.39	+0.2
3,864,445	-		DZA65_RS17945	0.39	+0.2
3,864,445	-		DZA65_RS17945	0.39	+0.2
3,864,445	-		DZA65_RS17945	0.39	+0.0
3,864,445	-		DZA65_RS17945	0.39	+0.4
3,864,445	-		DZA65_RS17945	0.39	-0.9
3,864,445	-		DZA65_RS17945	0.39	+2.0
3,864,445	-		DZA65_RS17945	0.39	+0.8
3,864,445	-		DZA65_RS17945	0.39	-3.1
3,864,445	-		DZA65_RS17945	0.39	+0.4
3,864,445	-		DZA65_RS17945	0.39	+0.0
3,864,445	-		DZA65_RS17945	0.39	-0.8
3,864,445	-		DZA65_RS17945	0.39	-0.9
3,864,445	-		DZA65_RS17945	0.39	-1.7
3,864,445	-		DZA65_RS17945	0.39	+0.6
3,864,453	+		DZA65_RS17945	0.40	-0.5
3,864,453	+		DZA65_RS17945	0.40	-2.6
3,864,453	+		DZA65_RS17945	0.40	+1.2
3,864,453	+		DZA65_RS17945	0.40	+0.2
3,864,453	+		DZA65_RS17945	0.40	-1.1
3,864,453	+		DZA65_RS17945	0.40	-1.6
3,864,453	+		DZA65_RS17945	0.40	+1.4
3,864,453	+		DZA65_RS17945	0.40	-0.9
3,864,453	+		DZA65_RS17945	0.40	-0.2
3,864,453	+		DZA65_RS17945	0.40	-1.0
3,864,454	-		DZA65_RS17945	0.40	-0.1
3,864,454	-		DZA65_RS17945	0.40	-0.1
3,864,454	-		DZA65_RS17945	0.40	+1.4
3,864,454	-		DZA65_RS17945	0.40	+0.2
3,864,454	-		DZA65_RS17945	0.40	+0.2
3,864,454	-		DZA65_RS17945	0.40	+0.4
3,864,454	-		DZA65_RS17945	0.40	+0.4
3,864,454	-		DZA65_RS17945	0.40	+0.3
3,864,454	-		DZA65_RS17945	0.40	-0.2
3,864,457	+		DZA65_RS17945	0.40	-0.8
3,864,457	+		DZA65_RS17945	0.40	-1.1
3,864,457	+		DZA65_RS17945	0.40	-1.8
3,864,457	+		DZA65_RS17945	0.40	+2.0
3,864,458	-		DZA65_RS17945	0.40	-1.4
3,864,458	-		DZA65_RS17945	0.40	-1.0
3,864,458	-		DZA65_RS17945	0.40	-2.3
3,864,459	+		DZA65_RS17945	0.40	-1.9
3,864,459	+		DZA65_RS17945	0.40	+0.0
3,864,459	+		DZA65_RS17945	0.40	+0.4
3,864,459	+		DZA65_RS17945	0.40	-1.1
3,864,459	+		DZA65_RS17945	0.40	+0.0
3,864,460	-		DZA65_RS17945	0.40	-2.1
3,864,460	-		DZA65_RS17945	0.40	-0.4
3,864,460	-		DZA65_RS17945	0.40	+0.2
3,864,460	-		DZA65_RS17945	0.40	-1.1
3,864,460	-		DZA65_RS17945	0.40	+0.7
3,864,484	+		DZA65_RS17945	0.42	-1.1