Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17830

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,836,328	+		DZA65_RS17825	0.15	-0.8
3,836,328	+		DZA65_RS17825	0.15	+0.3
3,836,328	+		DZA65_RS17825	0.15	+0.2
3,836,329	-		DZA65_RS17825	0.16	+0.9
3,836,329	-		DZA65_RS17825	0.16	-1.0
3,836,395	+		DZA65_RS17825	0.23	-2.0
3,836,464	+		DZA65_RS17825	0.32	+0.3
3,836,464	+		DZA65_RS17825	0.32	+0.4
3,836,464	+		DZA65_RS17825	0.32	-0.6
3,836,464	+		DZA65_RS17825	0.32	-0.6
3,836,464	+		DZA65_RS17825	0.32	+0.4
3,836,465	-		DZA65_RS17825	0.32	+0.7
3,836,465	-		DZA65_RS17825	0.32	+1.1
3,836,465	-		DZA65_RS17825	0.32	+1.4
3,836,465	-		DZA65_RS17825	0.32	+0.7
3,836,622	+		DZA65_RS17825	0.50	+0.8
3,836,622	+		DZA65_RS17825	0.50	+0.2
3,836,702	+		DZA65_RS17825	0.60	-0.2
3,836,703	-		DZA65_RS17825	0.60	+0.0
3,836,703	-		DZA65_RS17825	0.60	+0.2
3,836,703	-		DZA65_RS17825	0.60	-0.1
3,836,743	+		DZA65_RS17825	0.65	-1.7
3,836,743	+		DZA65_RS17825	0.65	-0.6
3,836,743	+		DZA65_RS17825	0.65	+0.4
3,836,743	+		DZA65_RS17825	0.65	+0.0
3,836,743	+		DZA65_RS17825	0.65	+1.2
3,836,743	+		DZA65_RS17825	0.65	-0.4
3,836,743	+		DZA65_RS17825	0.65	-0.4
3,836,743	+		DZA65_RS17825	0.65	-1.3
3,836,743	+		DZA65_RS17825	0.65	-0.9
3,836,743	+		DZA65_RS17825	0.65	+0.4
3,836,743	+		DZA65_RS17825	0.65	-0.2
3,836,743	+		DZA65_RS17825	0.65	-1.1
3,836,743	+		DZA65_RS17825	0.65	+0.7
3,836,743	+		DZA65_RS17825	0.65	+0.6
3,836,743	+		DZA65_RS17825	0.65	+1.0
3,836,744	-		DZA65_RS17825	0.65	-0.7
3,836,744	-		DZA65_RS17825	0.65	-0.8
3,836,744	-		DZA65_RS17825	0.65	+0.4
3,836,744	-		DZA65_RS17825	0.65	+0.5
3,836,744	-		DZA65_RS17825	0.65	-0.4
3,836,744	-				+0.9
3,836,744	-		DZA65_RS17825	0.65	+1.1
3,836,744	-		DZA65_RS17825	0.65	+0.2
3,836,745	+		DZA65_RS17825	0.65	+0.4
3,836,745	+		DZA65_RS17825	0.65	-0.7
3,836,745	+		DZA65_RS17825	0.65	+0.9
3,836,745	+		DZA65_RS17825	0.65	-2.0
3,836,745	+		DZA65_RS17825	0.65	-2.1
3,836,745	+		DZA65_RS17825	0.65	+0.8
3,836,745	+		DZA65_RS17825	0.65	+0.2
3,836,746	-		DZA65_RS17825	0.65	+1.1
3,836,746	-		DZA65_RS17825	0.65	-0.6
3,836,929	+		DZA65_RS17825	0.87	+0.4
3,836,930	-		DZA65_RS17825	0.87	+0.1
3,836,930	-		DZA65_RS17825	0.87	-0.6
3,836,931	+		DZA65_RS17825	0.87	+1.2
3,836,931	+		DZA65_RS17825	0.87	+1.8
3,836,931	+		DZA65_RS17825	0.87	+1.3
3,836,931	+		DZA65_RS17825	0.87	-2.0
3,836,931	+		DZA65_RS17825	0.87	-0.8
3,836,931	+		DZA65_RS17825	0.87	+0.9
3,836,932	-		DZA65_RS17825	0.87	+0.6
3,836,932	-		DZA65_RS17825	0.87	-1.1
3,836,932	-		DZA65_RS17825	0.87	+1.0
3,836,932	-		DZA65_RS17825	0.87	+0.5
3,836,932	-		DZA65_RS17825	0.87	+1.2
3,836,932	-		DZA65_RS17825	0.87	+2.3
3,836,932	-		DZA65_RS17825	0.87	+0.4
3,836,932	-		DZA65_RS17825	0.87	-0.6
3,836,948	+		DZA65_RS17825	0.89	+0.2
3,836,948	+		DZA65_RS17825	0.89	+0.4
3,836,949	-		DZA65_RS17825	0.89	-0.6
3,836,949	-		DZA65_RS17825	0.89	+0.3
3,836,949	-		DZA65_RS17825	0.89	-1.1
3,836,949	-		DZA65_RS17825	0.89	+0.1
3,836,962	+				+0.5
3,836,962	+				+0.8
3,836,963	-				+0.8
3,836,963	-				-0.6
3,837,003	+				+0.4
3,837,084	+				+1.1
3,837,084	+				-0.7
3,837,085	-				-1.7
3,837,085	-				-0.4
3,837,085	-				+0.4
3,837,085	-				+0.4
3,837,099	+				+0.3
3,837,099	+				+0.8
3,837,099	+				-0.2
3,837,099	+				-1.4
3,837,099	+				+1.5
3,837,100	-				+0.1
3,837,100	-				+0.0
3,837,100	-				+0.4
3,837,100	-				+0.7
3,837,151	+				-0.0
3,837,151	+				+0.0
3,837,151	+				-0.5
3,837,151	+				-1.7
3,837,152	-				-0.1
3,837,152	-				+0.4
3,837,152	-				+0.1
3,837,219	+				+0.6
3,837,220	-				-0.1
3,837,220	-				+1.3
3,837,220	-				-0.0
3,837,220	-				-0.6
3,837,220	-				+0.4
3,837,226	+				+0.1
3,837,226	+				+1.0
3,837,226	+				-0.9
3,837,226	+				-0.7
3,837,227	-				+0.4
3,837,227	-				+1.8
3,837,239	-				-1.1
3,837,434	-		DZA65_RS17830	0.12	+0.8
3,837,504	+		DZA65_RS17830	0.16	-0.4
3,837,594	+				+2.4
3,837,595	-		DZA65_RS17830	0.22	+0.1
3,837,595	-		DZA65_RS17830	0.22	+0.7
3,837,595	-		DZA65_RS17830	0.22	+3.0
3,837,595	-		DZA65_RS17830	0.22	+0.8
3,837,611	+		DZA65_RS17830	0.23	+0.0
3,837,612	-		DZA65_RS17830	0.23	+1.7
3,837,660	+		DZA65_RS17830	0.26	+0.5
3,837,754	+		DZA65_RS17830	0.32	-0.3
3,837,755	-		DZA65_RS17830	0.32	-0.9
3,837,755	-		DZA65_RS17830	0.32	+1.7
3,837,755	-		DZA65_RS17830	0.32	+1.1
3,837,755	-		DZA65_RS17830	0.32	+0.4
3,837,755	-		DZA65_RS17830	0.32	+2.0
3,837,858	+		DZA65_RS17830	0.38	-0.0
3,837,859	-		DZA65_RS17830	0.39	+0.0
3,837,980	+		DZA65_RS17830	0.46	+1.9
3,837,981	-		DZA65_RS17830	0.46	-1.0
3,837,981	-		DZA65_RS17830	0.46	-1.2
3,837,996	-		DZA65_RS17830	0.47	-1.2
3,837,996	-		DZA65_RS17830	0.47	+0.9
3,837,996	-		DZA65_RS17830	0.47	-0.2
3,838,140	+		DZA65_RS17830	0.56	-0.4
3,838,140	+		DZA65_RS17830	0.56	+0.7
3,838,140	+		DZA65_RS17830	0.56	-1.0
3,838,140	+		DZA65_RS17830	0.56	-2.6
3,838,140	+		DZA65_RS17830	0.56	-0.6
3,838,140	+		DZA65_RS17830	0.56	-0.4
3,838,140	+		DZA65_RS17830	0.56	-1.2
3,838,140	+		DZA65_RS17830	0.56	+0.4
3,838,140	+		DZA65_RS17830	0.56	+2.9
3,838,140	+		DZA65_RS17830	0.56	+0.4
3,838,140	+		DZA65_RS17830	0.56	+1.4
3,838,140	+		DZA65_RS17830	0.56	-0.4
3,838,140	+		DZA65_RS17830	0.56	+1.0
3,838,140	+		DZA65_RS17830	0.56	+1.4
3,838,140	+		DZA65_RS17830	0.56	-0.7
3,838,140	+		DZA65_RS17830	0.56	-0.6
3,838,140	+		DZA65_RS17830	0.56	+2.2
3,838,140	+		DZA65_RS17830	0.56	-0.2
3,838,140	+		DZA65_RS17830	0.56	-0.0
3,838,141	-		DZA65_RS17830	0.56	+0.3
3,838,141	-		DZA65_RS17830	0.56	+0.4
3,838,141	-		DZA65_RS17830	0.56	+0.8
3,838,141	-		DZA65_RS17830	0.56	+1.0
3,838,141	-		DZA65_RS17830	0.56	+0.6
3,838,141	-		DZA65_RS17830	0.56	+0.3
3,838,141	-		DZA65_RS17830	0.56	+0.9
3,838,141	-		DZA65_RS17830	0.56	+0.3
3,838,141	-		DZA65_RS17830	0.56	+1.5
3,838,173	-		DZA65_RS17830	0.58	+1.0
3,838,332	+		DZA65_RS17830	0.68	+0.2
3,838,332	+		DZA65_RS17830	0.68	+0.6
3,838,332	+		DZA65_RS17830	0.68	-0.1
3,838,332	+		DZA65_RS17830	0.68	+1.6
3,838,332	+		DZA65_RS17830	0.68	+1.0
3,838,333	-		DZA65_RS17830	0.68	-0.6
3,838,333	-		DZA65_RS17830	0.68	+0.6
3,838,333	-		DZA65_RS17830	0.68	+0.1
3,838,506	+		DZA65_RS17830	0.79	-1.2
3,838,506	+		DZA65_RS17830	0.79	+1.2
3,838,506	+		DZA65_RS17830	0.79	+0.0
3,838,506	+		DZA65_RS17830	0.79	+0.4
3,838,507	-		DZA65_RS17830	0.79	+0.0
3,838,507	-				+1.4
3,838,507	-		DZA65_RS17830	0.79	+0.1
3,838,507	-		DZA65_RS17830	0.79	-0.6
3,838,507	-		DZA65_RS17830	0.79	+0.6
3,838,507	-		DZA65_RS17830	0.79	+1.2
3,838,507	-		DZA65_RS17830	0.79	+1.2
3,838,781	+				+0.9
3,838,781	+				+0.3
3,838,833	+				+0.4
3,838,834	-				-1.3
3,838,842	+				+0.3
3,838,843	-				+0.2
3,838,852	+				+1.9
3,838,853	-				+0.7
3,838,853	-				-0.2
3,838,853	-				+0.8
3,838,853	-				-1.2
3,838,867	+				-0.2
3,838,920	+		DZA65_RS17835	0.20	-2.9
3,838,920	+		DZA65_RS17835	0.20	-0.3
3,838,920	+		DZA65_RS17835	0.20	-0.1
3,838,921	-		DZA65_RS17835	0.20	+0.4
3,838,985	+		DZA65_RS17835	0.53	+0.4
3,838,986	-		DZA65_RS17835	0.53	-1.7
3,838,986	-		DZA65_RS17835	0.53	-0.5
3,839,180	+				+0.2
3,839,180	+				-0.4
3,839,181	-				+0.3
3,839,181	-				+0.4
3,839,181	-				-1.2
3,839,201	+				-1.6
3,839,201	+				+0.9
3,839,202	-				+0.3
3,839,202	-				+0.1
3,839,456	+		DZA65_RS17840	0.27	-0.9
3,839,456	+		DZA65_RS17840	0.27	+1.3
3,839,456	+		DZA65_RS17840	0.27	+0.1
3,839,457	-		DZA65_RS17840	0.27	-0.4
3,839,457	-		DZA65_RS17840	0.27	+0.5
3,839,462	+		DZA65_RS17840	0.27	-0.6
3,839,470	+		DZA65_RS17840	0.28	-1.6
3,839,470	+		DZA65_RS17840	0.28	-0.8
3,839,470	+		DZA65_RS17840	0.28	+0.9
3,839,489	+		DZA65_RS17840	0.29	-0.1
3,839,671	-		DZA65_RS17840	0.42	+0.4
3,839,756	+		DZA65_RS17840	0.48	+0.3
3,839,756	+		DZA65_RS17840	0.48	+2.3
3,839,757	-		DZA65_RS17840	0.48	-0.1
3,839,757	-		DZA65_RS17840	0.48	+0.4
3,839,757	-		DZA65_RS17840	0.48	+0.4
3,839,757	-		DZA65_RS17840	0.48	-0.2
3,839,757	-		DZA65_RS17840	0.48	+0.4
3,839,757	-		DZA65_RS17840	0.48	-1.1
3,839,757	-		DZA65_RS17840	0.48	-2.4
3,839,757	-		DZA65_RS17840	0.48	+0.2