Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17780

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,826,762	-		DZA65_RS17770	0.46	-0.3
3,826,762	-		DZA65_RS17770	0.46	-0.2
3,826,762	-		DZA65_RS17770	0.46	-0.3
3,826,782	+		DZA65_RS17770	0.50	+1.6
3,826,783	-		DZA65_RS17770	0.50	+0.6
3,826,841	+		DZA65_RS17770	0.61	+0.2
3,826,881	-		DZA65_RS17770	0.68	+0.2
3,827,068	+				+1.4
3,827,068	+				-0.0
3,827,069	-				+1.0
3,827,069	-				+0.6
3,827,069	-				+0.2
3,827,069	-				-0.6
3,827,072	+				-2.6
3,827,073	-				+0.0
3,827,116	+				-1.4
3,827,116	+				+2.2
3,827,116	+				+2.6
3,827,117	-				+0.4
3,827,169	+		DZA65_RS17775	0.14	+1.9
3,827,169	+		DZA65_RS17775	0.14	-0.3
3,827,170	-		DZA65_RS17775	0.14	+0.1
3,827,225	-		DZA65_RS17775	0.22	+0.4
3,827,225	-		DZA65_RS17775	0.22	+0.1
3,827,253	+		DZA65_RS17775	0.26	-2.4
3,827,253	+		DZA65_RS17775	0.26	+0.3
3,827,253	+		DZA65_RS17775	0.26	+0.0
3,827,254	-		DZA65_RS17775	0.26	+0.8
3,827,262	+		DZA65_RS17775	0.28	-1.2
3,827,270	+		DZA65_RS17775	0.29	+0.1
3,827,270	+		DZA65_RS17775	0.29	-1.7
3,827,271	-		DZA65_RS17775	0.29	-0.5
3,827,271	-		DZA65_RS17775	0.29	+0.2
3,827,312	+		DZA65_RS17775	0.35	-2.1
3,827,313	-		DZA65_RS17775	0.35	-0.3
3,827,393	+		DZA65_RS17775	0.46	+0.1
3,827,393	+		DZA65_RS17775	0.46	-0.1
3,827,393	+		DZA65_RS17775	0.46	+1.6
3,827,394	-		DZA65_RS17775	0.47	+0.4
3,827,394	-		DZA65_RS17775	0.47	+0.1
3,827,454	-		DZA65_RS17775	0.55	+1.2
3,827,454	-		DZA65_RS17775	0.55	+2.2
3,827,454	-		DZA65_RS17775	0.55	-1.4
3,827,547	+		DZA65_RS17775	0.69	-0.6
3,827,547	+		DZA65_RS17775	0.69	+0.2
3,827,707	+				-0.1
3,827,707	+				-0.0
3,827,707	+				+0.9
3,827,708	-				+1.1
3,827,708	-				-1.1
3,827,708	-				+0.3
3,827,718	+				-0.1
3,827,841	+		DZA65_RS17780	0.13	-1.1
3,827,841	+		DZA65_RS17780	0.13	+1.4
3,827,841	+		DZA65_RS17780	0.13	+0.9
3,827,841	+		DZA65_RS17780	0.13	+1.2
3,827,841	+		DZA65_RS17780	0.13	-0.3
3,827,841	+		DZA65_RS17780	0.13	+1.2
3,827,841	+		DZA65_RS17780	0.13	-1.4
3,827,841	+		DZA65_RS17780	0.13	+0.2
3,827,842	-		DZA65_RS17780	0.13	-1.6
3,827,842	-		DZA65_RS17780	0.13	+1.0
3,827,842	-		DZA65_RS17780	0.13	-1.0
3,827,842	-		DZA65_RS17780	0.13	+0.7
3,827,842	-		DZA65_RS17780	0.13	+0.4
3,827,842	-		DZA65_RS17780	0.13	+0.2
3,827,860	+		DZA65_RS17780	0.16	+0.4
3,827,861	-		DZA65_RS17780	0.16	+1.8
3,827,861	-		DZA65_RS17780	0.16	+1.1
3,827,993	+		DZA65_RS17780	0.38	-0.1
3,827,994	-		DZA65_RS17780	0.38	-0.0
3,828,128	-		DZA65_RS17780	0.60	+0.3
3,828,137	+		DZA65_RS17780	0.61	+1.0
3,828,137	+		DZA65_RS17780	0.61	+0.9
3,828,137	+		DZA65_RS17780	0.61	+0.0
3,828,137	+		DZA65_RS17780	0.61	-1.0
3,828,137	+		DZA65_RS17780	0.61	+1.0
3,828,137	+		DZA65_RS17780	0.61	-1.0
3,828,137	+		DZA65_RS17780	0.61	-1.1
3,828,137	+		DZA65_RS17780	0.61	-2.9
3,828,137	+		DZA65_RS17780	0.61	+0.5
3,828,137	+		DZA65_RS17780	0.61	-0.2
3,828,137	+		DZA65_RS17780	0.61	-2.4
3,828,137	+		DZA65_RS17780	0.61	-0.2
3,828,137	+		DZA65_RS17780	0.61	-0.5
3,828,137	+		DZA65_RS17780	0.61	+1.1
3,828,138	-		DZA65_RS17780	0.61	-0.5
3,828,138	-		DZA65_RS17780	0.61	-1.0
3,828,138	-		DZA65_RS17780	0.61	+1.7
3,828,138	-		DZA65_RS17780	0.61	+1.1
3,828,138	-		DZA65_RS17780	0.61	+2.4
3,828,138	-		DZA65_RS17780	0.61	+0.3
3,828,138	-		DZA65_RS17780	0.61	-0.0
3,828,138	-		DZA65_RS17780	0.61	+0.0
3,828,138	-		DZA65_RS17780	0.61	+0.0
3,828,251	+		DZA65_RS17780	0.80	+1.1
3,828,375	-				+0.1
3,828,375	-				+0.2
3,828,375	-				+0.4
3,828,375	-				+1.1
3,828,386	+				+0.4
3,828,386	+				+0.4
3,828,386	+				+1.6
3,828,386	+				+0.6
3,828,386	+				-1.6
3,828,387	-				+0.0
3,828,410	-				+1.2
3,828,449	+				-2.1
3,828,449	+				+0.7
3,828,449	+				-0.2
3,828,449	+				-0.6
3,828,450	-				+0.5
3,828,450	-				+0.8
3,828,450	-				+0.4
3,828,452	+				-0.6
3,828,452	+				-0.1
3,828,452	+				-1.4
3,828,452	+				+2.0
3,828,452	+				-0.4
3,828,452	+				-1.6
3,828,452	+				-0.3
3,828,452	+				+0.0
3,828,453	-				+0.7
3,828,453	-				-0.2
3,828,453	-				-0.6
3,828,453	-				+0.8
3,828,453	-				+0.6
3,828,453	-				+0.4
3,828,453	-				-0.6
3,828,453	-				+1.3
3,828,453	-				-0.0
3,828,458	+				+0.4
3,828,458	+				+0.4
3,828,458	+				-0.8
3,828,458	+				-1.6
3,828,459	-				+0.2
3,828,459	-				+0.6
3,828,459	-				-1.0
3,828,459	-				-0.2
3,828,459	-				-0.6
3,828,459	-				+2.0
3,828,459	-				+0.1
3,828,459	-				-0.4
3,828,462	+				+1.4
3,828,462	+				+0.4
3,828,462	+				-2.9
3,828,462	+				+0.3
3,828,535	+				+1.0
3,828,535	+				+0.1
3,828,535	+				+0.9
3,828,536	-				+0.0
3,828,536	-				-0.1
3,828,536	-				-1.4
3,828,536	-				-0.8
3,828,536	-				+0.9
3,828,536	-				+1.7
3,828,536	-				-0.9
3,828,537	+				-0.8
3,828,537	+				+1.2
3,828,537	+				-0.6
3,828,537	+				+0.4
3,828,537	+				+0.3
3,828,537	+				-0.1
3,828,537	+				+0.0
3,828,537	+				-0.6
3,828,537	+				-1.9
3,828,537	+				-0.3
3,828,537	+				+0.2
3,828,537	+				-0.7
3,828,538	-				-0.9
3,828,538	-				-0.1
3,828,538	-				+0.1
3,828,538	-				-0.3
3,828,538	-				+1.0
3,828,538	-				+0.0
3,828,538	-				-0.6
3,828,539	+				+1.4
3,828,539	+				-0.8
3,828,539	+				-0.1
3,828,539	+				-0.1
3,828,539	+				+0.0
3,828,539	+				+0.3
3,828,539	+				+0.0
3,828,539	+				-2.6
3,828,539	+				+1.5
3,828,539	+				-0.8
3,828,539	+				+0.8
3,828,539	+				+0.3
3,828,539	+				+0.4
3,828,539	+				+0.0
3,828,539	+				-0.3
3,828,539	+				-0.6
3,828,540	-				-0.4
3,828,540	-				-0.3
3,828,540	-				+0.4
3,828,540	-				-0.6
3,828,540	-				+0.8
3,828,540	-				+0.6
3,828,540	-				+0.6
3,828,540	-				-1.7
3,828,540	-				+0.2
3,828,540	-				-0.6
3,828,540	-				+1.9
3,828,540	-				+0.8
3,828,540	-				-0.3
3,828,540	-				-0.6
3,828,540	-				-0.1
3,828,540	-				+0.2
3,828,540	-				-0.3
3,828,540	-				-1.1
3,828,637	-				-1.6
3,828,673	-				-1.1
3,828,673	-				-0.1
3,828,673	-				-1.1
3,828,715	+		DZA65_RS17785	0.12	+1.0
3,828,716	-		DZA65_RS17785	0.12	+0.7
3,828,736	+		DZA65_RS17785	0.13	+0.7
3,828,763	+		DZA65_RS17785	0.16	-1.4
3,828,827	-		DZA65_RS17785	0.21	+0.2
3,828,950	-		DZA65_RS17785	0.32	+0.3
3,828,959	-		DZA65_RS17785	0.33	+0.4
3,828,959	-		DZA65_RS17785	0.33	+0.9
3,828,959	-		DZA65_RS17785	0.33	+1.7
3,829,168	+		DZA65_RS17785	0.51	+0.0
3,829,168	+		DZA65_RS17785	0.51	-1.7
3,829,168	+		DZA65_RS17785	0.51	+2.3
3,829,168	+		DZA65_RS17785	0.51	+1.9
3,829,168	+		DZA65_RS17785	0.51	+0.4
3,829,168	+		DZA65_RS17785	0.51	-3.3
3,829,168	+		DZA65_RS17785	0.51	+0.8
3,829,168	+		DZA65_RS17785	0.51	+0.6
3,829,168	+		DZA65_RS17785	0.51	-1.9
3,829,168	+		DZA65_RS17785	0.51	+1.1
3,829,168	+		DZA65_RS17785	0.51	+1.4
3,829,168	+		DZA65_RS17785	0.51	-0.6
3,829,168	+		DZA65_RS17785	0.51	+0.4
3,829,168	+		DZA65_RS17785	0.51	+0.2
3,829,168	+		DZA65_RS17785	0.51	-0.7
3,829,168	+		DZA65_RS17785	0.51	+0.5
3,829,168	+		DZA65_RS17785	0.51	+0.2
3,829,168	+		DZA65_RS17785	0.51	+3.8
3,829,168	+		DZA65_RS17785	0.51	-0.1
3,829,168	+		DZA65_RS17785	0.51	+1.2
3,829,168	+		DZA65_RS17785	0.51	-1.6
3,829,168	+		DZA65_RS17785	0.51	+0.9
3,829,168	+		DZA65_RS17785	0.51	-1.9
3,829,168	+		DZA65_RS17785	0.51	-0.8
3,829,168	+		DZA65_RS17785	0.51	-1.9
3,829,168	+		DZA65_RS17785	0.51	-0.8
3,829,168	+		DZA65_RS17785	0.51	+0.2
3,829,169	-		DZA65_RS17785	0.51	-1.1
3,829,169	-		DZA65_RS17785	0.51	-2.1
3,829,169	-		DZA65_RS17785	0.51	-1.8
3,829,169	-		DZA65_RS17785	0.51	-0.2
3,829,169	-		DZA65_RS17785	0.51	-0.3
3,829,169	-		DZA65_RS17785	0.51	-0.3
3,829,169	-		DZA65_RS17785	0.51	-0.5
3,829,169	-		DZA65_RS17785	0.51	+1.1
3,829,169	-		DZA65_RS17785	0.51	+0.3
3,829,169	-		DZA65_RS17785	0.51	-0.1
3,829,169	-		DZA65_RS17785	0.51	+0.6
3,829,169	-		DZA65_RS17785	0.51	+0.7
3,829,169	-		DZA65_RS17785	0.51	+0.7
3,829,169	-		DZA65_RS17785	0.51	+0.7
3,829,169	-		DZA65_RS17785	0.51	+0.1
3,829,169	-		DZA65_RS17785	0.51	-1.4
3,829,169	-		DZA65_RS17785	0.51	-1.4
3,829,189	+		DZA65_RS17785	0.53	-0.1
3,829,189	+		DZA65_RS17785	0.53	+1.0
3,829,190	-		DZA65_RS17785	0.53	+0.4
3,829,288	+		DZA65_RS17785	0.61	-0.8
3,829,289	-		DZA65_RS17785	0.61	+0.6
3,829,289	-		DZA65_RS17785	0.61	+0.4
3,829,315	+		DZA65_RS17785	0.63	+0.4
3,829,316	-		DZA65_RS17785	0.64	+1.1
3,829,354	-		DZA65_RS17785	0.67	-1.6
3,829,354	-		DZA65_RS17785	0.67	-0.3
3,829,366	+		DZA65_RS17785	0.68	-0.2
3,829,366	+		DZA65_RS17785	0.68	-1.4
3,829,366	+		DZA65_RS17785	0.68	+0.4
3,829,366	+		DZA65_RS17785	0.68	+1.6
3,829,366	+		DZA65_RS17785	0.68	-0.5
3,829,366	+		DZA65_RS17785	0.68	+1.8
3,829,367	-		DZA65_RS17785	0.68	-0.5
3,829,367	-		DZA65_RS17785	0.68	+0.4
3,829,367	-		DZA65_RS17785	0.68	-0.9
3,829,367	-		DZA65_RS17785	0.68	+0.4
3,829,367	-		DZA65_RS17785	0.68	-0.9