Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17760

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,823,091	+		DZA65_RS17755	0.64	-0.1
3,823,172	-		DZA65_RS17755	0.67	+1.4
3,823,172	-		DZA65_RS17755	0.67	-0.1
3,823,172	-		DZA65_RS17755	0.67	+1.2
3,823,186	+		DZA65_RS17755	0.67	-1.1
3,823,187	-		DZA65_RS17755	0.67	-0.3
3,823,187	-		DZA65_RS17755	0.67	+0.6
3,823,187	-		DZA65_RS17755	0.67	+1.0
3,823,259	+		DZA65_RS17755	0.70	+1.2
3,823,259	+		DZA65_RS17755	0.70	+1.4
3,823,262	+		DZA65_RS17755	0.71	-0.2
3,823,263	-		DZA65_RS17755	0.71	-0.4
3,823,263	-		DZA65_RS17755	0.71	-0.4
3,823,263	-		DZA65_RS17755	0.71	+1.6
3,823,377	+		DZA65_RS17755	0.75	+0.6
3,823,377	+		DZA65_RS17755	0.75	+0.8
3,823,378	-		DZA65_RS17755	0.75	+0.1
3,823,378	-		DZA65_RS17755	0.75	-0.4
3,823,378	-		DZA65_RS17755	0.75	+1.1
3,823,378	-		DZA65_RS17755	0.75	-0.9
3,823,378	-		DZA65_RS17755	0.75	+0.4
3,823,391	+		DZA65_RS17755	0.76	+0.7
3,823,391	+		DZA65_RS17755	0.76	+0.0
3,823,391	+		DZA65_RS17755	0.76	-1.0
3,823,391	+		DZA65_RS17755	0.76	+0.0
3,823,392	-		DZA65_RS17755	0.76	-2.9
3,823,512	+		DZA65_RS17755	0.81	+0.7
3,823,512	+		DZA65_RS17755	0.81	+0.4
3,823,513	-		DZA65_RS17755	0.81	+1.4
3,823,513	-		DZA65_RS17755	0.81	+0.0
3,823,513	-		DZA65_RS17755	0.81	+0.8
3,823,519	+		DZA65_RS17755	0.81	-0.9
3,823,519	+		DZA65_RS17755	0.81	-0.1
3,823,519	+		DZA65_RS17755	0.81	-0.8
3,823,519	+		DZA65_RS17755	0.81	+0.9
3,823,519	+		DZA65_RS17755	0.81	-0.5
3,823,520	-		DZA65_RS17755	0.81	+0.9
3,823,520	-		DZA65_RS17755	0.81	+0.8
3,823,673	+		DZA65_RS17755	0.87	-0.5
3,823,673	+		DZA65_RS17755	0.87	+0.8
3,823,674	-		DZA65_RS17755	0.87	-1.0
3,823,730	-		DZA65_RS17755	0.90	-1.9
3,823,792	+				+0.8
3,823,792	+				-1.1
3,823,793	-				-1.7
3,823,793	-				-0.4
3,823,793	-				-1.0
3,823,793	-				-0.9
3,823,793	-				+0.2
3,823,793	-				+0.1
3,823,793	-				-0.3
3,823,793	-				+0.1
3,823,805	-				+0.7
3,823,840	+				+0.9
3,823,841	-				-0.5
3,823,860	+				+1.0
3,823,860	+				-0.4
3,823,860	+				-0.7
3,823,860	+				+0.6
3,823,861	-				-1.9
3,823,861	-				-0.4
3,823,861	-				+0.8
3,824,286	+		DZA65_RS17760	0.20	+0.4
3,824,286	+		DZA65_RS17760	0.20	+0.5
3,824,287	-		DZA65_RS17760	0.20	+0.6
3,824,287	-		DZA65_RS17760	0.20	-0.7
3,824,331	-		DZA65_RS17760	0.24	+0.8
3,824,331	-		DZA65_RS17760	0.24	-0.8
3,824,374	+		DZA65_RS17760	0.27	-0.3
3,824,423	+		DZA65_RS17760	0.31	-2.0
3,824,442	+		DZA65_RS17760	0.33	+0.8
3,824,442	+		DZA65_RS17760	0.33	+1.3
3,824,442	+		DZA65_RS17760	0.33	+1.4
3,824,442	+		DZA65_RS17760	0.33	-2.1
3,824,442	+		DZA65_RS17760	0.33	-0.6
3,824,442	+		DZA65_RS17760	0.33	-0.0
3,824,442	+		DZA65_RS17760	0.33	-1.1
3,824,443	-		DZA65_RS17760	0.33	-0.0
3,824,443	-		DZA65_RS17760	0.33	-0.3
3,824,443	-		DZA65_RS17760	0.33	+0.2
3,824,443	-		DZA65_RS17760	0.33	+0.9
3,824,443	-		DZA65_RS17760	0.33	+0.3
3,824,497	-		DZA65_RS17760	0.37	-0.6
3,824,608	+		DZA65_RS17760	0.47	+0.4
3,824,609	-		DZA65_RS17760	0.47	-1.0
3,824,609	-		DZA65_RS17760	0.47	+0.1
3,824,669	+		DZA65_RS17760	0.52	-0.1
3,824,689	+		DZA65_RS17760	0.53	-0.1
3,824,689	+		DZA65_RS17760	0.53	+0.9
3,824,689	+		DZA65_RS17760	0.53	+0.7
3,824,689	+		DZA65_RS17760	0.53	-0.6
3,824,689	+		DZA65_RS17760	0.53	-0.8
3,824,690	-		DZA65_RS17760	0.53	+1.0
3,824,690	-		DZA65_RS17760	0.53	+0.3
3,824,706	+		DZA65_RS17760	0.55	+0.7
3,824,706	+		DZA65_RS17760	0.55	+0.4
3,824,706	+		DZA65_RS17760	0.55	+1.3
3,824,706	+		DZA65_RS17760	0.55	+1.1
3,824,707	-		DZA65_RS17760	0.55	+1.4
3,824,707	-		DZA65_RS17760	0.55	-1.7
3,824,707	-		DZA65_RS17760	0.55	-2.1
3,824,707	-		DZA65_RS17760	0.55	+1.2
3,824,707	-		DZA65_RS17760	0.55	+0.4
3,824,707	-		DZA65_RS17760	0.55	+0.5
3,824,707	-		DZA65_RS17760	0.55	+2.4
3,824,758	+		DZA65_RS17760	0.59	+0.2
3,824,758	+		DZA65_RS17760	0.59	-0.7
3,824,759	-		DZA65_RS17760	0.59	+0.8
3,824,759	-		DZA65_RS17760	0.59	-0.1
3,824,759	-		DZA65_RS17760	0.59	+1.0
3,824,759	-		DZA65_RS17760	0.59	-0.6
3,824,835	+		DZA65_RS17760	0.65	+0.4
3,824,835	+		DZA65_RS17760	0.65	-0.0
3,824,835	+		DZA65_RS17760	0.65	-0.6
3,824,835	+				+1.7
3,824,835	+		DZA65_RS17760	0.65	-1.4
3,824,836	-		DZA65_RS17760	0.66	+0.2
3,824,836	-		DZA65_RS17760	0.66	-0.9
3,824,836	-		DZA65_RS17760	0.66	+1.1
3,825,066	+		DZA65_RS17760	0.85	-0.9
3,825,066	+		DZA65_RS17760	0.85	+1.0
3,825,066	+		DZA65_RS17760	0.85	-0.1
3,825,067	-		DZA65_RS17760	0.85	-0.0
3,825,164	+				+1.2
3,825,164	+				+1.3
3,825,164	+				-0.8
3,825,164	+				+0.3
3,825,164	+				+0.4
3,825,164	+				-1.7
3,825,164	+				-0.6
3,825,165	-				-0.6
3,825,165	-				-0.3
3,825,165	-				-0.3
3,825,196	-				+0.1
3,825,208	-				+0.0
3,825,229	+				-0.2
3,825,230	-				-1.4
3,825,230	-				-0.6
3,825,236	-				-0.2
3,825,236	-				+0.5
3,825,264	+				-0.4
3,825,264	+				-0.9
3,825,265	-				-0.2
3,825,268	+				+0.9
3,825,268	+				-0.6
3,825,268	+				+0.1
3,825,268	+				-0.5
3,825,268	+				+0.4
3,825,268	+				+0.0
3,825,268	+				+1.0
3,825,268	+				-0.4
3,825,269	-				+1.0
3,825,269	-				+1.3
3,825,269	-				-0.6
3,825,269	-				+0.1
3,825,269	-				-0.1
3,825,269	-				+0.2
3,825,269	-				+2.8
3,825,269	-				-0.6
3,825,272	+				+0.2
3,825,272	+				+0.4
3,825,272	+				-3.1
3,825,272	+				-0.4
3,825,272	+				-0.3
3,825,272	+				+0.2
3,825,272	+				-0.1
3,825,272	+				-0.6
3,825,272	+				+0.3
3,825,272	+				-0.4
3,825,272	+				-1.8
3,825,272	+				-0.9
3,825,272	+				-0.6
3,825,272	+				-1.1
3,825,272	+				-1.4
3,825,272	+				-2.6
3,825,272	+				-2.4
3,825,273	-				+0.0
3,825,273	-				-1.1
3,825,273	-				-0.7
3,825,273	-				-0.1
3,825,273	-				-1.1
3,825,273	-				-0.2
3,825,273	-				+0.4
3,825,273	-				-2.1
3,825,273	-				-0.1
3,825,273	-				+1.2
3,825,273	-				-2.7
3,825,273	-				+0.5
3,825,285	+				+1.8
3,825,285	+				+1.0
3,825,285	+				-0.9
3,825,285	+				+0.3
3,825,285	+				+1.2
3,825,285	+				+1.1
3,825,285	+				-0.9
3,825,285	+				-0.7
3,825,285	+				-0.8
3,825,285	+				+0.4
3,825,285	+				+0.4
3,825,286	-				-1.9
3,825,286	-				-0.7
3,825,286	-				+0.2
3,825,286	-				+1.0
3,825,286	-				-0.7
3,825,286	-				+0.2
3,825,286	-				+0.7
3,825,286	-				+0.4
3,825,286	-				+1.0
3,825,286	-				-0.0
3,825,286	-				+0.4
3,825,286	-				+0.3
3,825,286	-				-0.6
3,825,311	+				-0.4
3,825,311	+				-0.4
3,825,312	-				+0.8
3,825,312	-				-0.1
3,825,321	-				+1.2
3,825,322	+				-0.9
3,825,329	-				-0.1
3,825,374	+				+0.4
3,825,375	-				+2.0
3,825,375	-				+0.4
3,825,375	-				+1.1
3,825,407	+				-0.2
3,825,625	-		DZA65_RS17765	0.20	-0.9
3,825,625	-		DZA65_RS17765	0.20	+0.8
3,825,784	+		DZA65_RS17765	0.36	-0.1
3,825,785	-		DZA65_RS17765	0.36	-1.9
3,825,785	-		DZA65_RS17765	0.36	+0.4
3,825,785	-		DZA65_RS17765	0.36	-0.4
3,825,910	-		DZA65_RS17765	0.48	+0.2
3,825,910	-		DZA65_RS17765	0.48	-0.9
3,825,910	-		DZA65_RS17765	0.48	+0.1
3,825,910	-		DZA65_RS17765	0.48	-0.6
3,826,022	+		DZA65_RS17765	0.59	+0.0
3,826,023	-		DZA65_RS17765	0.59	-0.2
3,826,023	-		DZA65_RS17765	0.59	-1.3
3,826,142	+		DZA65_RS17765	0.70	-0.8
3,826,142	+		DZA65_RS17765	0.70	+0.6
3,826,142	+		DZA65_RS17765	0.70	-0.2
3,826,142	+		DZA65_RS17765	0.70	-0.0
3,826,142	+		DZA65_RS17765	0.70	+0.7
3,826,142	+		DZA65_RS17765	0.70	+1.7
3,826,142	+		DZA65_RS17765	0.70	-1.1
3,826,142	+		DZA65_RS17765	0.70	-1.6
3,826,142	+		DZA65_RS17765	0.70	+1.2
3,826,142	+		DZA65_RS17765	0.70	-1.6
3,826,142	+		DZA65_RS17765	0.70	+0.4
3,826,143	-		DZA65_RS17765	0.70	+1.0
3,826,143	-		DZA65_RS17765	0.70	+0.0
3,826,143	-		DZA65_RS17765	0.70	+0.4
3,826,143	-		DZA65_RS17765	0.70	+0.1
3,826,143	-		DZA65_RS17765	0.70	+0.4
3,826,166	+		DZA65_RS17765	0.73	+0.4
3,826,166	+		DZA65_RS17765	0.73	-0.8
3,826,184	+		DZA65_RS17765	0.74	+1.9
3,826,184	+		DZA65_RS17765	0.74	+0.6
3,826,184	+		DZA65_RS17765	0.74	+0.5
3,826,185	-		DZA65_RS17765	0.75	-0.8
3,826,185	-		DZA65_RS17765	0.75	-0.9
3,826,185	-		DZA65_RS17765	0.75	+0.3