Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17755

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,820,571	-				+0.4
3,820,574	+				+0.1
3,820,574	+				-0.0
3,820,574	+				-0.1
3,820,574	+				-0.7
3,820,575	-				-0.1
3,820,575	-				+0.2
3,820,593	+				-0.7
3,820,593	+				-0.2
3,820,594	-				-0.6
3,820,594	-				+0.8
3,820,594	-				-0.9
3,821,230	-				+0.1
3,821,230	-				-1.1
3,821,230	-				+0.1
3,821,230	-				+1.6
3,821,233	+				+1.4
3,821,234	-				+0.8
3,821,234	-				-0.6
3,821,234	-				+1.4
3,821,234	-				+0.6
3,821,234	-				-0.0
3,821,234	-				+0.1
3,821,234	-				+1.2
3,821,239	-				-1.7
3,821,239	-				+0.0
3,821,239	-				-0.2
3,821,239	-				-2.1
3,821,239	-				-1.6
3,821,239	-				+0.1
3,821,239	-				+0.1
3,821,239	-				-0.4
3,821,307	+				-0.1
3,821,308	-				+0.5
3,821,308	-				+1.0
3,821,308	-				+1.2
3,821,308	-				+0.9
3,821,308	-				+0.1
3,821,308	-				+0.1
3,821,308	-				+0.4
3,821,425	+				+1.4
3,821,425	+				-0.6
3,821,426	-				-1.9
3,821,478	+				-1.7
3,821,478	+				-2.1
3,821,478	+				+0.8
3,821,479	-				+0.4
3,821,479	-				-1.9
3,821,479	-				+0.9
3,821,479	-				+0.4
3,821,479	-				-2.6
3,821,481	-				+0.0
3,821,506	-				-0.9
3,821,506	-				+0.8
3,821,506	-				+0.0
3,821,514	+				-0.1
3,821,515	-				+0.9
3,821,515	-				+0.2
3,821,516	+				-1.3
3,821,516	+				+0.6
3,821,516	+				+0.4
3,821,517	-				-0.3
3,821,530	+				-1.9
3,821,530	+				-2.7
3,821,530	+				+0.2
3,821,530	+				+0.7
3,821,530	+				+0.4
3,821,530	+				+0.8
3,821,531	-				+1.4
3,821,531	-				+2.4
3,821,536	+				+0.4
3,821,536	+				-0.6
3,821,536	+				+0.1
3,821,536	+				+0.6
3,821,537	-				-0.0
3,821,537	-				-0.6
3,821,537	-				+0.7
3,821,537	-				+0.7
3,821,537	-				+0.4
3,821,537	-				+0.2
3,821,537	-				+0.2
3,821,588	+				-0.3
3,821,588	+				-0.6
3,821,589	-				-0.3
3,821,589	-				-0.9
3,821,589	-				+0.6
3,821,589	-				-0.2
3,821,628	+				-1.0
3,821,628	+				-1.9
3,821,628	+				-0.4
3,821,628	+				+0.4
3,821,628	+				+0.7
3,821,629	-				-1.1
3,821,629	-				-0.6
3,821,629	-				+0.2
3,821,629	-				+0.1
3,821,700	+				-0.8
3,821,700	+				-1.0
3,821,737	+				-1.4
3,821,737	+				-1.1
3,821,738	-				+1.0
3,821,998	-		DZA65_RS17755	0.19	-0.2
3,822,054	-		DZA65_RS17755	0.21	+1.2
3,822,077	+		DZA65_RS17755	0.22	+0.6
3,822,077	+		DZA65_RS17755	0.22	+0.0
3,822,144	+		DZA65_RS17755	0.25	-0.1
3,822,144	+		DZA65_RS17755	0.25	+0.6
3,822,144	+		DZA65_RS17755	0.25	-0.1
3,822,145	-		DZA65_RS17755	0.25	-2.1
3,822,145	-		DZA65_RS17755	0.25	-0.1
3,822,145	-		DZA65_RS17755	0.25	+0.0
3,822,145	-		DZA65_RS17755	0.25	+0.8
3,822,148	+		DZA65_RS17755	0.25	-0.3
3,822,148	+		DZA65_RS17755	0.25	-0.4
3,822,148	+		DZA65_RS17755	0.25	+0.3
3,822,148	+		DZA65_RS17755	0.25	-0.1
3,822,148	+		DZA65_RS17755	0.25	-0.1
3,822,148	+		DZA65_RS17755	0.25	-0.6
3,822,149	-		DZA65_RS17755	0.25	+0.4
3,822,149	-		DZA65_RS17755	0.25	-0.6
3,822,149	-		DZA65_RS17755	0.25	+0.1
3,822,149	-		DZA65_RS17755	0.25	-1.8
3,822,149	-		DZA65_RS17755	0.25	+1.0
3,822,149	-		DZA65_RS17755	0.25	+0.4
3,822,182	+		DZA65_RS17755	0.26	-0.4
3,822,182	+		DZA65_RS17755	0.26	-0.9
3,822,209	+				+0.4
3,822,209	+		DZA65_RS17755	0.27	+0.9
3,822,209	+		DZA65_RS17755	0.27	+1.2
3,822,210	-		DZA65_RS17755	0.28	+0.4
3,822,210	-		DZA65_RS17755	0.28	-1.1
3,822,210	-		DZA65_RS17755	0.28	+1.6
3,822,300	+		DZA65_RS17755	0.31	+1.7
3,822,340	-		DZA65_RS17755	0.33	+0.0
3,822,371	+		DZA65_RS17755	0.34	+2.1
3,822,371	+		DZA65_RS17755	0.34	-0.5
3,822,371	+		DZA65_RS17755	0.34	+0.8
3,822,371	+		DZA65_RS17755	0.34	+1.4
3,822,372	-		DZA65_RS17755	0.34	+0.0
3,822,372	-				-0.1
3,822,376	+		DZA65_RS17755	0.34	-1.0
3,822,376	+		DZA65_RS17755	0.34	-0.6
3,822,376	+		DZA65_RS17755	0.34	+0.2
3,822,376	+		DZA65_RS17755	0.34	-0.6
3,822,376	+		DZA65_RS17755	0.34	+0.4
3,822,377	-		DZA65_RS17755	0.34	+0.3
3,822,377	-		DZA65_RS17755	0.34	-0.0
3,822,377	-		DZA65_RS17755	0.34	+0.1
3,822,377	-		DZA65_RS17755	0.34	-1.0
3,822,377	-		DZA65_RS17755	0.34	+0.1
3,822,422	+		DZA65_RS17755	0.36	-0.6
3,822,422	+		DZA65_RS17755	0.36	+0.0
3,822,466	+		DZA65_RS17755	0.38	-1.1
3,822,466	+		DZA65_RS17755	0.38	+0.1
3,822,466	+		DZA65_RS17755	0.38	-0.3
3,822,467	-		DZA65_RS17755	0.38	-0.1
3,822,587	+		DZA65_RS17755	0.43	-0.3
3,822,587	+		DZA65_RS17755	0.43	+0.1
3,822,587	+		DZA65_RS17755	0.43	+1.5
3,822,587	+		DZA65_RS17755	0.43	+1.4
3,822,587	+		DZA65_RS17755	0.43	-0.3
3,822,588	-		DZA65_RS17755	0.43	+0.2
3,822,588	-		DZA65_RS17755	0.43	+0.8
3,822,588	-		DZA65_RS17755	0.43	-1.1
3,822,588	-		DZA65_RS17755	0.43	+1.8
3,822,588	-		DZA65_RS17755	0.43	+0.4
3,822,588	-		DZA65_RS17755	0.43	-1.1
3,822,588	-		DZA65_RS17755	0.43	-0.1
3,822,588	-		DZA65_RS17755	0.43	-0.9
3,822,588	-		DZA65_RS17755	0.43	+0.7
3,822,588	-		DZA65_RS17755	0.43	+2.7
3,822,628	+		DZA65_RS17755	0.45	+1.6
3,822,628	+		DZA65_RS17755	0.45	+1.0
3,822,628	+		DZA65_RS17755	0.45	+0.4
3,822,629	-		DZA65_RS17755	0.45	-1.0
3,822,629	-		DZA65_RS17755	0.45	+1.6
3,822,629	-		DZA65_RS17755	0.45	-0.6
3,822,629	-		DZA65_RS17755	0.45	+0.2
3,822,629	-		DZA65_RS17755	0.45	+1.1
3,822,629	-		DZA65_RS17755	0.45	+2.0
3,822,722	+		DZA65_RS17755	0.48	+1.2
3,822,723	-		DZA65_RS17755	0.49	+0.4
3,822,809	+		DZA65_RS17755	0.52	+1.0
3,822,810	-		DZA65_RS17755	0.52	+1.1
3,822,810	-		DZA65_RS17755	0.52	-3.3
3,822,810	-		DZA65_RS17755	0.52	-0.1
3,822,836	-		DZA65_RS17755	0.53	-0.2
3,822,893	+		DZA65_RS17755	0.55	-2.9
3,822,893	+		DZA65_RS17755	0.55	+0.4
3,822,893	+		DZA65_RS17755	0.55	+0.2
3,822,894	-		DZA65_RS17755	0.56	-0.0
3,822,894	-		DZA65_RS17755	0.56	+1.6
3,822,894	-		DZA65_RS17755	0.56	+0.9
3,822,894	-		DZA65_RS17755	0.56	-0.4
3,822,894	-		DZA65_RS17755	0.56	-0.1
3,822,894	-		DZA65_RS17755	0.56	-0.8
3,822,995	+		DZA65_RS17755	0.60	+0.3
3,822,996	-		DZA65_RS17755	0.60	+1.3
3,822,996	-		DZA65_RS17755	0.60	+0.2
3,822,996	-		DZA65_RS17755	0.60	+0.5
3,823,091	+		DZA65_RS17755	0.64	-0.1
3,823,172	-		DZA65_RS17755	0.67	+1.4
3,823,172	-		DZA65_RS17755	0.67	-0.1
3,823,172	-		DZA65_RS17755	0.67	+1.2
3,823,186	+		DZA65_RS17755	0.67	-1.1
3,823,187	-		DZA65_RS17755	0.67	-0.3
3,823,187	-		DZA65_RS17755	0.67	+0.6
3,823,187	-		DZA65_RS17755	0.67	+1.0
3,823,259	+		DZA65_RS17755	0.70	+1.2
3,823,259	+		DZA65_RS17755	0.70	+1.4
3,823,262	+		DZA65_RS17755	0.71	-0.2
3,823,263	-		DZA65_RS17755	0.71	-0.4
3,823,263	-		DZA65_RS17755	0.71	-0.4
3,823,263	-		DZA65_RS17755	0.71	+1.6
3,823,377	+		DZA65_RS17755	0.75	+0.6
3,823,377	+		DZA65_RS17755	0.75	+0.8
3,823,378	-		DZA65_RS17755	0.75	+0.1
3,823,378	-		DZA65_RS17755	0.75	-0.4
3,823,378	-		DZA65_RS17755	0.75	+1.1
3,823,378	-		DZA65_RS17755	0.75	-0.9
3,823,378	-		DZA65_RS17755	0.75	+0.4
3,823,391	+		DZA65_RS17755	0.76	+0.7
3,823,391	+		DZA65_RS17755	0.76	+0.0
3,823,391	+		DZA65_RS17755	0.76	-1.0
3,823,391	+		DZA65_RS17755	0.76	+0.0
3,823,392	-		DZA65_RS17755	0.76	-2.9
3,823,512	+		DZA65_RS17755	0.81	+0.7
3,823,512	+		DZA65_RS17755	0.81	+0.4
3,823,513	-		DZA65_RS17755	0.81	+1.4
3,823,513	-		DZA65_RS17755	0.81	+0.0
3,823,513	-		DZA65_RS17755	0.81	+0.8
3,823,519	+		DZA65_RS17755	0.81	-0.9
3,823,519	+		DZA65_RS17755	0.81	-0.1
3,823,519	+		DZA65_RS17755	0.81	-0.8
3,823,519	+		DZA65_RS17755	0.81	+0.9
3,823,519	+		DZA65_RS17755	0.81	-0.5
3,823,520	-		DZA65_RS17755	0.81	+0.9
3,823,520	-		DZA65_RS17755	0.81	+0.8
3,823,673	+		DZA65_RS17755	0.87	-0.5
3,823,673	+		DZA65_RS17755	0.87	+0.8
3,823,674	-		DZA65_RS17755	0.87	-1.0
3,823,730	-		DZA65_RS17755	0.90	-1.9
3,823,792	+				+0.8
3,823,792	+				-1.1
3,823,793	-				-1.7
3,823,793	-				-0.4
3,823,793	-				-1.0
3,823,793	-				-0.9
3,823,793	-				+0.2
3,823,793	-				+0.1
3,823,793	-				-0.3
3,823,793	-				+0.1
3,823,805	-				+0.7
3,823,840	+				+0.9
3,823,841	-				-0.5
3,823,860	+				+1.0
3,823,860	+				-0.4
3,823,860	+				-0.7
3,823,860	+				+0.6
3,823,861	-				-1.9
3,823,861	-				-0.4
3,823,861	-				+0.8
3,824,286	+		DZA65_RS17760	0.20	+0.4
3,824,286	+		DZA65_RS17760	0.20	+0.5
3,824,287	-		DZA65_RS17760	0.20	+0.6
3,824,287	-		DZA65_RS17760	0.20	-0.7
3,824,331	-		DZA65_RS17760	0.24	+0.8
3,824,331	-		DZA65_RS17760	0.24	-0.8
3,824,374	+		DZA65_RS17760	0.27	-0.3
3,824,423	+		DZA65_RS17760	0.31	-2.0
3,824,442	+		DZA65_RS17760	0.33	+0.8
3,824,442	+		DZA65_RS17760	0.33	+1.3
3,824,442	+		DZA65_RS17760	0.33	+1.4
3,824,442	+		DZA65_RS17760	0.33	-2.1
3,824,442	+		DZA65_RS17760	0.33	-0.6
3,824,442	+		DZA65_RS17760	0.33	-0.0
3,824,442	+		DZA65_RS17760	0.33	-1.1
3,824,443	-		DZA65_RS17760	0.33	-0.0
3,824,443	-		DZA65_RS17760	0.33	-0.3
3,824,443	-		DZA65_RS17760	0.33	+0.2
3,824,443	-		DZA65_RS17760	0.33	+0.9
3,824,443	-		DZA65_RS17760	0.33	+0.3
3,824,497	-		DZA65_RS17760	0.37	-0.6
3,824,608	+		DZA65_RS17760	0.47	+0.4
3,824,609	-		DZA65_RS17760	0.47	-1.0
3,824,609	-		DZA65_RS17760	0.47	+0.1
3,824,669	+		DZA65_RS17760	0.52	-0.1
3,824,689	+		DZA65_RS17760	0.53	-0.1
3,824,689	+		DZA65_RS17760	0.53	+0.9
3,824,689	+		DZA65_RS17760	0.53	+0.7
3,824,689	+		DZA65_RS17760	0.53	-0.6
3,824,689	+		DZA65_RS17760	0.53	-0.8
3,824,690	-		DZA65_RS17760	0.53	+1.0
3,824,690	-		DZA65_RS17760	0.53	+0.3
3,824,706	+		DZA65_RS17760	0.55	+0.7
3,824,706	+		DZA65_RS17760	0.55	+0.4
3,824,706	+		DZA65_RS17760	0.55	+1.3
3,824,706	+		DZA65_RS17760	0.55	+1.1
3,824,707	-		DZA65_RS17760	0.55	+1.4
3,824,707	-		DZA65_RS17760	0.55	-1.7
3,824,707	-		DZA65_RS17760	0.55	-2.1
3,824,707	-		DZA65_RS17760	0.55	+1.2
3,824,707	-		DZA65_RS17760	0.55	+0.4
3,824,707	-		DZA65_RS17760	0.55	+0.5
3,824,707	-		DZA65_RS17760	0.55	+2.4
3,824,758	+		DZA65_RS17760	0.59	+0.2
3,824,758	+		DZA65_RS17760	0.59	-0.7
3,824,759	-		DZA65_RS17760	0.59	+0.8
3,824,759	-		DZA65_RS17760	0.59	-0.1
3,824,759	-		DZA65_RS17760	0.59	+1.0
3,824,759	-		DZA65_RS17760	0.59	-0.6
3,824,835	+		DZA65_RS17760	0.65	+0.4
3,824,835	+		DZA65_RS17760	0.65	-0.0
3,824,835	+		DZA65_RS17760	0.65	-0.6
3,824,835	+				+1.7
3,824,835	+		DZA65_RS17760	0.65	-1.4
3,824,836	-		DZA65_RS17760	0.66	+0.2
3,824,836	-		DZA65_RS17760	0.66	-0.9
3,824,836	-		DZA65_RS17760	0.66	+1.1