Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17715

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,812,696	+		DZA65_RS17705	0.76	-0.3
3,812,824	+		DZA65_RS17705	0.86	-0.1
3,812,824	+		DZA65_RS17705	0.86	+0.0
3,812,825	-		DZA65_RS17705	0.86	+0.6
3,812,825	-		DZA65_RS17705	0.86	-1.3
3,812,825	-		DZA65_RS17705	0.86	+0.8
3,812,825	-		DZA65_RS17705	0.86	+0.2
3,812,825	-		DZA65_RS17705	0.86	+0.4
3,812,825	-		DZA65_RS17705	0.86	-1.6
3,812,856	+		DZA65_RS17705	0.89	-0.1
3,812,856	+		DZA65_RS17705	0.89	+0.9
3,812,856	+		DZA65_RS17705	0.89	-0.3
3,812,856	+		DZA65_RS17705	0.89	+1.0
3,812,857	-		DZA65_RS17705	0.89	-0.7
3,812,875	+				+0.4
3,812,875	+				+1.1
3,812,875	+				+0.3
3,812,876	-				+0.2
3,812,876	-				+1.2
3,812,876	-				-1.4
3,812,876	-				-0.8
3,812,932	+				+0.0
3,812,932	+				-0.4
3,812,932	+				+2.8
3,813,042	-				+1.1
3,813,184	+		DZA65_RS17710	0.34	+0.1
3,813,184	+		DZA65_RS17710	0.34	-2.1
3,813,184	+		DZA65_RS17710	0.34	-1.6
3,813,184	+		DZA65_RS17710	0.34	-0.6
3,813,185	-		DZA65_RS17710	0.34	-1.3
3,813,185	-		DZA65_RS17710	0.34	-0.0
3,813,185	-		DZA65_RS17710	0.34	+0.6
3,813,185	-		DZA65_RS17710	0.34	+0.2
3,813,229	+		DZA65_RS17710	0.42	-0.6
3,813,230	-		DZA65_RS17710	0.42	-0.3
3,813,230	-		DZA65_RS17710	0.42	-0.8
3,813,288	-		DZA65_RS17710	0.53	-1.0
3,813,397	+		DZA65_RS17710	0.73	-1.1
3,813,397	+		DZA65_RS17710	0.73	+2.4
3,813,398	-		DZA65_RS17710	0.74	+0.4
3,813,398	-		DZA65_RS17710	0.74	+0.2
3,813,478	-		DZA65_RS17710	0.88	-2.0
3,813,519	+				+0.6
3,813,519	+				-1.1
3,813,519	+				-0.0
3,813,520	-				-1.0
3,813,520	-				-0.6
3,813,534	+				-0.2
3,813,534	+				+1.2
3,813,575	+				+0.7
3,813,575	+				-0.1
3,813,575	+				+0.7
3,813,575	+				-0.7
3,813,576	-				+1.7
3,813,576	-				-1.3
3,813,580	+				+1.0
3,813,580	+				-0.1
3,813,580	+				+1.7
3,813,580	+				-0.7
3,813,580	+				-0.9
3,813,581	-				+0.4
3,813,581	-				-0.5
3,813,618	-				-1.0
3,813,701	+				+0.8
3,813,701	+				+0.6
3,813,732	+				-0.0
3,813,732	+				-0.1
3,813,732	+				+0.6
3,813,733	-				+0.1
3,813,754	+				-0.6
3,813,835	+		DZA65_RS17715	0.16	-0.4
3,813,899	+		DZA65_RS17715	0.21	-0.3
3,813,899	+		DZA65_RS17715	0.21	-1.2
3,813,899	+		DZA65_RS17715	0.21	-1.6
3,813,900	-		DZA65_RS17715	0.21	-0.0
3,813,925	+		DZA65_RS17715	0.23	+0.1
3,813,925	+		DZA65_RS17715	0.23	-0.4
3,813,925	+		DZA65_RS17715	0.23	-0.7
3,813,925	+		DZA65_RS17715	0.23	+0.4
3,813,925	+		DZA65_RS17715	0.23	+0.1
3,813,926	-		DZA65_RS17715	0.23	-0.1
3,813,926	-		DZA65_RS17715	0.23	-0.0
3,813,926	-		DZA65_RS17715	0.23	-2.1
3,813,926	-		DZA65_RS17715	0.23	-0.8
3,813,926	-		DZA65_RS17715	0.23	+1.4
3,814,034	+				-1.6
3,814,034	+		DZA65_RS17715	0.31	+0.4
3,814,035	-		DZA65_RS17715	0.32	-0.2
3,814,035	-		DZA65_RS17715	0.32	-0.6
3,814,108	+		DZA65_RS17715	0.37	+2.4
3,814,108	+		DZA65_RS17715	0.37	-1.1
3,814,108	+		DZA65_RS17715	0.37	-1.0
3,814,108	+		DZA65_RS17715	0.37	-1.2
3,814,108	+		DZA65_RS17715	0.37	+0.4
3,814,109	-		DZA65_RS17715	0.37	-0.6
3,814,109	-		DZA65_RS17715	0.37	-0.8
3,814,109	-		DZA65_RS17715	0.37	+0.5
3,814,235	+		DZA65_RS17715	0.48	-2.4
3,814,235	+		DZA65_RS17715	0.48	-1.9
3,814,235	+		DZA65_RS17715	0.48	-0.8
3,814,236	-		DZA65_RS17715	0.48	-0.1
3,814,236	-		DZA65_RS17715	0.48	+1.4
3,814,236	-		DZA65_RS17715	0.48	+0.4
3,814,256	+		DZA65_RS17715	0.49	-0.3
3,814,256	+		DZA65_RS17715	0.49	+0.4
3,814,257	-		DZA65_RS17715	0.49	+0.9
3,814,294	+		DZA65_RS17715	0.52	-0.2
3,814,391	+		DZA65_RS17715	0.60	-0.6
3,814,493	+		DZA65_RS17715	0.68	-1.6
3,814,517	+		DZA65_RS17715	0.70	+0.4
3,814,572	+		DZA65_RS17715	0.75	+3.0
3,814,592	+		DZA65_RS17715	0.76	-0.1
3,814,592	+		DZA65_RS17715	0.76	+0.4
3,814,592	+		DZA65_RS17715	0.76	-0.0
3,814,592	+		DZA65_RS17715	0.76	-0.1
3,814,592	+				+0.4
3,814,592	+		DZA65_RS17715	0.76	+0.1
3,814,592	+		DZA65_RS17715	0.76	-0.7
3,814,592	+		DZA65_RS17715	0.76	+0.4
3,814,592	+		DZA65_RS17715	0.76	-0.1
3,814,592	+		DZA65_RS17715	0.76	+0.9
3,814,592	+		DZA65_RS17715	0.76	-0.3
3,814,592	+		DZA65_RS17715	0.76	-0.5
3,814,593	-		DZA65_RS17715	0.76	-0.6
3,814,593	-		DZA65_RS17715	0.76	-1.0
3,814,593	-		DZA65_RS17715	0.76	+0.8
3,814,593	-		DZA65_RS17715	0.76	-0.6
3,814,593	-		DZA65_RS17715	0.76	+0.0
3,814,593	-		DZA65_RS17715	0.76	-0.3
3,814,593	-		DZA65_RS17715	0.76	-0.1
3,814,593	-		DZA65_RS17715	0.76	-0.7
3,814,593	-		DZA65_RS17715	0.76	+0.4
3,814,593	-		DZA65_RS17715	0.76	-0.7
3,814,593	-		DZA65_RS17715	0.76	-0.7
3,814,827	+				-0.3
3,814,827	+				-0.9
3,814,827	+				+1.2
3,814,828	-				+0.9
3,814,828	-				+0.1
3,814,846	+				+0.4
3,814,857	+				-0.3
3,814,920	+				+1.2
3,814,926	+				-0.6
3,814,927	-				-1.6
3,814,960	-				-0.1
3,814,973	+				+0.6
3,814,973	+				-0.7
3,814,973	+				+0.4
3,814,973	+				+1.9
3,814,973	+				+0.7
3,814,973	+				-1.5
3,814,974	-				+0.4
3,814,974	-				-2.9
3,814,974	-				+0.6
3,814,974	-				+0.0
3,814,974	-				+0.3
3,814,982	+				-0.1
3,814,982	+				+0.4
3,815,004	+				-0.1
3,815,004	+				-0.1
3,815,004	+				-1.1
3,815,004	+				+0.6
3,815,005	-				+0.4
3,815,074	+				-0.6
3,815,075	-				+1.2
3,815,075	-				+0.4
3,815,133	-		DZA65_RS17720	0.19	-0.4
3,815,178	+		DZA65_RS17720	0.29	-0.1
3,815,178	+		DZA65_RS17720	0.29	-2.4
3,815,179	-		DZA65_RS17720	0.29	-1.4
3,815,195	+		DZA65_RS17720	0.32	+0.1
3,815,196	-		DZA65_RS17720	0.32	-0.6
3,815,196	-		DZA65_RS17720	0.32	-1.9
3,815,196	-		DZA65_RS17720	0.32	-0.4
3,815,230	-		DZA65_RS17720	0.40	-1.1
3,815,245	+		DZA65_RS17720	0.43	-0.3
3,815,245	+		DZA65_RS17720	0.43	-0.7
3,815,245	+		DZA65_RS17720	0.43	+0.7
3,815,245	+		DZA65_RS17720	0.43	+0.3
3,815,245	+		DZA65_RS17720	0.43	-0.6
3,815,245	+		DZA65_RS17720	0.43	-1.0
3,815,245	+		DZA65_RS17720	0.43	+0.4
3,815,246	-		DZA65_RS17720	0.43	+1.4
3,815,246	-		DZA65_RS17720	0.43	-0.4
3,815,246	-		DZA65_RS17720	0.43	+1.6
3,815,246	-		DZA65_RS17720	0.43	+0.3
3,815,246	-		DZA65_RS17720	0.43	-1.1
3,815,246	-		DZA65_RS17720	0.43	+0.4
3,815,246	-		DZA65_RS17720	0.43	-1.1
3,815,246	-		DZA65_RS17720	0.43	-0.6
3,815,246	-		DZA65_RS17720	0.43	-0.2
3,815,255	+		DZA65_RS17720	0.45	-0.5
3,815,255	+		DZA65_RS17720	0.45	+0.3
3,815,255	+		DZA65_RS17720	0.45	+0.7
3,815,255	+		DZA65_RS17720	0.45	-0.3
3,815,255	+		DZA65_RS17720	0.45	-0.4
3,815,256	-		DZA65_RS17720	0.46	-2.7
3,815,256	-		DZA65_RS17720	0.46	-1.8
3,815,256	-				+2.0
3,815,318	+		DZA65_RS17720	0.59	+0.2
3,815,319	-		DZA65_RS17720	0.59	+0.9
3,815,328	+		DZA65_RS17720	0.61	-1.4
3,815,328	+		DZA65_RS17720	0.61	+0.4
3,815,328	+		DZA65_RS17720	0.61	-2.6
3,815,328	+		DZA65_RS17720	0.61	+0.4
3,815,328	+		DZA65_RS17720	0.61	-1.5
3,815,328	+		DZA65_RS17720	0.61	-1.0
3,815,328	+		DZA65_RS17720	0.61	+0.5
3,815,328	+		DZA65_RS17720	0.61	-0.5
3,815,328	+		DZA65_RS17720	0.61	-0.8
3,815,328	+		DZA65_RS17720	0.61	-1.0
3,815,328	+		DZA65_RS17720	0.61	-0.9
3,815,328	+		DZA65_RS17720	0.61	+0.1
3,815,329	-		DZA65_RS17720	0.61	+1.8
3,815,329	-		DZA65_RS17720	0.61	-0.7
3,815,329	-		DZA65_RS17720	0.61	-0.3
3,815,329	-		DZA65_RS17720	0.61	+0.4
3,815,329	-		DZA65_RS17720	0.61	-1.0
3,815,329	-		DZA65_RS17720	0.61	-0.6
3,815,329	-		DZA65_RS17720	0.61	-0.3
3,815,329	-		DZA65_RS17720	0.61	+0.4
3,815,329	-		DZA65_RS17720	0.61	-0.6
3,815,329	-		DZA65_RS17720	0.61	+1.8
3,815,329	-		DZA65_RS17720	0.61	-1.9
3,815,329	-		DZA65_RS17720	0.61	-1.5
3,815,329	-		DZA65_RS17720	0.61	-0.0
3,815,332	+		DZA65_RS17720	0.62	-0.5
3,815,332	+		DZA65_RS17720	0.62	+0.4
3,815,332	+		DZA65_RS17720	0.62	-0.0
3,815,332	+		DZA65_RS17720	0.62	-0.4
3,815,332	+		DZA65_RS17720	0.62	-0.6
3,815,332	+		DZA65_RS17720	0.62	+0.4
3,815,332	+		DZA65_RS17720	0.62	+0.1
3,815,332	+		DZA65_RS17720	0.62	-0.9
3,815,332	+		DZA65_RS17720	0.62	+0.1
3,815,332	+		DZA65_RS17720	0.62	+0.0
3,815,332	+		DZA65_RS17720	0.62	-0.9
3,815,332	+		DZA65_RS17720	0.62	-0.8
3,815,332	+		DZA65_RS17720	0.62	+1.2
3,815,332	+		DZA65_RS17720	0.62	-0.1
3,815,332	+		DZA65_RS17720	0.62	-0.6
3,815,332	+		DZA65_RS17720	0.62	-1.9
3,815,332	+		DZA65_RS17720	0.62	-0.1
3,815,332	+		DZA65_RS17720	0.62	-1.9
3,815,333	-		DZA65_RS17720	0.62	-0.6
3,815,333	-		DZA65_RS17720	0.62	-0.9
3,815,333	-		DZA65_RS17720	0.62	-0.3
3,815,333	-		DZA65_RS17720	0.62	-0.1
3,815,333	-		DZA65_RS17720	0.62	-0.9
3,815,333	-		DZA65_RS17720	0.62	-0.4
3,815,333	-		DZA65_RS17720	0.62	-0.1
3,815,333	-		DZA65_RS17720	0.62	+0.9
3,815,333	-		DZA65_RS17720	0.62	+0.3
3,815,333	-		DZA65_RS17720	0.62	+0.1
3,815,334	-				-1.1
3,815,341	+		DZA65_RS17720	0.64	+0.2
3,815,341	+		DZA65_RS17720	0.64	+1.4
3,815,341	+		DZA65_RS17720	0.64	-0.0
3,815,341	+		DZA65_RS17720	0.64	-0.4
3,815,341	+		DZA65_RS17720	0.64	-0.2
3,815,342	-		DZA65_RS17720	0.64	-0.6
3,815,342	-		DZA65_RS17720	0.64	-1.2
3,815,342	-		DZA65_RS17720	0.64	+0.2
3,815,342	-		DZA65_RS17720	0.64	-0.7
3,815,342	-		DZA65_RS17720	0.64	-0.6
3,815,342	-		DZA65_RS17720	0.64	-1.6
3,815,342	-		DZA65_RS17720	0.64	-0.1
3,815,342	-		DZA65_RS17720	0.64	+0.2
3,815,342	-		DZA65_RS17720	0.64	+0.4
3,815,342	-		DZA65_RS17720	0.64	-1.4
3,815,342	-		DZA65_RS17720	0.64	-0.1
3,815,342	-		DZA65_RS17720	0.64	-1.4
3,815,342	-		DZA65_RS17720	0.64	+1.0
3,815,346	+		DZA65_RS17720	0.65	-2.1
3,815,475	+				-0.8
3,815,475	+				-0.2
3,815,475	+				-2.7
3,815,475	+				-0.4
3,815,475	+				+0.3
3,815,475	+				+1.6
3,815,476	-				+0.1
3,815,476	-				-2.4
3,815,476	-				-0.0
3,815,476	-				+0.6
3,815,476	-				-1.1
3,815,476	-				-0.5
3,815,476	-				+0.7
3,815,476	-				-2.6
3,815,476	-				-0.2
3,815,492	+				-1.9
3,815,493	-				-0.0
3,815,505	+				-1.1
3,815,505	+				-0.1
3,815,506	-				-0.9
3,815,506	-				-1.1
3,815,506	-				+1.2
3,815,512	+				-0.0
3,815,513	-				+1.0
3,815,538	+				-0.3
3,815,539	-				+0.9
3,815,539	-				+0.5
3,815,562	-				-0.4
3,815,577	+				+0.0
3,815,578	-				+0.5
3,815,579	+				-1.9
3,815,579	+				-1.6
3,815,579	+				-0.3
3,815,579	+				+1.0
3,815,579	+				+0.6
3,815,579	+				-0.1
3,815,579	+				+0.4
3,815,579	+				-0.6
3,815,579	+				-0.8
3,815,579	+				-1.0
3,815,579	+				-0.6
3,815,579	+				-0.8
3,815,579	+				+0.1
3,815,580	-				+0.4
3,815,580	-				+0.5
3,815,580	-				+0.0
3,815,580	-				+0.8
3,815,580	-				+0.8
3,815,580	-				+0.8
3,815,580	-				+2.4
3,815,580	-				-0.6
3,815,580	-				-0.5
3,815,580	-				-0.9
3,815,580	-				+0.2
3,815,580	-				+1.8
3,815,580	-				+0.5
3,815,583	+				+0.9
3,815,583	+				-0.4
3,815,583	+				+0.6
3,815,584	-				-0.6
3,815,584	-				-0.3
3,815,584	-				+1.0
3,815,584	-				-1.0
3,815,584	-				+1.2
3,815,584	-				-0.2
3,815,584	-				-0.6
3,815,605	+				-1.4
3,815,605	+				+0.2
3,815,605	+				-0.2
3,815,606	-				-1.8
3,815,609	+				+0.4
3,815,609	+				-0.7
3,815,609	+				-0.3
3,815,609	+				+2.0
3,815,609	+				+0.1
3,815,610	-				-0.2
3,815,610	-				-0.4
3,815,610	-				-1.1
3,815,615	+				-1.3
3,815,615	+				+0.4
3,815,615	+				-0.9
3,815,616	-				+0.9
3,815,616	-				-0.6
3,815,616	-				-0.5
3,815,616	-				-2.4
3,815,616	-				-0.5
3,815,616	-				-1.1
3,815,616	-				-1.4
3,815,616	-				-0.3
3,815,664	-				-1.0
3,815,675	+				+0.7
3,815,676	-				-0.3
3,815,691	+				-0.9
3,815,811	+		DZA65_RS17725	0.36	-1.1
3,815,812	-		DZA65_RS17725	0.37	-1.1
3,815,812	-		DZA65_RS17725	0.37	-0.3
3,815,812	-		DZA65_RS17725	0.37	-0.1
3,815,850	+		DZA65_RS17725	0.56	-1.4
3,815,850	+		DZA65_RS17725	0.56	-1.6
3,815,850	+		DZA65_RS17725	0.56	-2.1
3,815,851	-		DZA65_RS17725	0.56	-1.5
3,815,851	-		DZA65_RS17725	0.56	-0.8
3,815,851	-		DZA65_RS17725	0.56	-0.4
3,815,851	-		DZA65_RS17725	0.56	+0.8
3,815,851	-		DZA65_RS17725	0.56	+0.0
3,815,853	+		DZA65_RS17725	0.57	-0.6
3,815,853	+		DZA65_RS17725	0.57	+2.0
3,815,854	-		DZA65_RS17725	0.58	-1.2
3,815,854	-		DZA65_RS17725	0.58	+1.2
3,815,854	-		DZA65_RS17725	0.58	-0.9
3,815,854	-		DZA65_RS17725	0.58	-1.3