Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17625

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,796,329	+				+0.1
3,796,329	+				+0.6
3,796,345	-				+0.0
3,796,360	+				-0.1
3,796,361	-				-0.2
3,796,420	+				+0.8
3,796,421	-				-0.4
3,796,422	+				-0.6
3,796,422	+				-0.9
3,796,422	+				+2.4
3,796,422	+				-0.2
3,796,422	+				-0.3
3,796,422	+				-0.2
3,796,423	-				+0.1
3,796,423	-				-0.6
3,796,423	-				+0.3
3,796,423	-				+0.9
3,796,442	+				-0.4
3,796,454	+				+0.9
3,796,477	+				+0.2
3,796,478	-				+0.3
3,796,478	-				-0.2
3,796,505	+				-0.8
3,796,506	-				+0.2
3,796,535	-				+0.6
3,796,535	-				+0.9
3,796,554	+				+2.6
3,796,554	+				+0.0
3,796,554	+				-0.2
3,796,554	+				+0.0
3,796,554	+				-0.9
3,796,554	+				+0.2
3,796,554	+				-1.0
3,796,554	+				-2.1
3,796,554	+				+1.2
3,796,554	+				-0.1
3,796,555	-				+0.3
3,796,555	-				+1.3
3,796,555	-				-0.0
3,796,555	-				-0.2
3,796,555	-				+0.0
3,796,555	-				+0.1
3,796,555	-				+0.8
3,796,555	-				+0.3
3,796,561	+				+0.8
3,796,561	+				+0.4
3,796,561	+				-0.2
3,796,561	+				-0.2
3,796,561	+				+0.4
3,796,562	-				-1.0
3,796,562	-				+0.8
3,796,562	-				-0.5
3,796,562	-				-0.4
3,796,562	-				-0.4
3,796,562	-				-0.1
3,796,562	-				+1.6
3,796,588	+				+1.2
3,796,588	+				-1.6
3,796,589	-				-0.3
3,796,589	-				-1.2
3,796,589	-				-1.0
3,796,589	-				-0.1
3,796,589	-				-0.3
3,796,589	-				+0.3
3,796,589	-				+1.3
3,796,645	-		DZA65_RS17620	0.12	+0.3
3,796,645	-		DZA65_RS17620	0.12	-0.6
3,796,673	-		DZA65_RS17620	0.17	+0.4
3,796,715	+		DZA65_RS17620	0.24	-0.3
3,796,715	+		DZA65_RS17620	0.24	-0.1
3,796,716	-		DZA65_RS17620	0.24	+1.0
3,796,716	-		DZA65_RS17620	0.24	-1.0
3,796,741	-		DZA65_RS17620	0.28	+1.2
3,796,741	-		DZA65_RS17620	0.28	-0.1
3,796,791	-		DZA65_RS17620	0.36	+0.4
3,796,791	-		DZA65_RS17620	0.36	+1.0
3,796,799	-		DZA65_RS17620	0.38	+0.1
3,796,964	+		DZA65_RS17620	0.65	-1.4
3,796,964	+		DZA65_RS17620	0.65	+0.7
3,796,965	-		DZA65_RS17620	0.65	-0.3
3,796,965	-		DZA65_RS17620	0.65	-1.7
3,796,965	-		DZA65_RS17620	0.65	+1.1
3,796,965	-		DZA65_RS17620	0.65	-1.4
3,796,965	-		DZA65_RS17620	0.65	-0.0
3,797,006	+		DZA65_RS17620	0.72	+0.8
3,797,007	-		DZA65_RS17620	0.72	+0.4
3,797,007	-		DZA65_RS17620	0.72	+0.1
3,797,007	-		DZA65_RS17620	0.72	-0.8
3,797,007	-		DZA65_RS17620	0.72	-0.6
3,797,034	+		DZA65_RS17620	0.77	-1.7
3,797,035	-		DZA65_RS17620	0.77	+0.4
3,797,091	-		DZA65_RS17620	0.86	+0.5
3,797,100	+		DZA65_RS17620	0.88	-0.2
3,797,100	+		DZA65_RS17620	0.88	+0.4
3,797,100	+		DZA65_RS17620	0.88	+0.9
3,797,104	+		DZA65_RS17620	0.88	-0.6
3,797,105	-		DZA65_RS17620	0.88	-2.1
3,797,120	+				-0.2
3,797,120	+				-0.4
3,797,121	-				-0.1
3,797,126	+				+0.4
3,797,126	+				+1.1
3,797,127	-				-1.0
3,797,127	-				+0.4
3,797,145	+				-0.1
3,797,146	-				+0.4
3,797,169	+				+0.4
3,797,169	+				-0.3
3,797,169	+				+0.5
3,797,169	+				-0.7
3,797,170	-				-0.4
3,797,173	-				-0.4
3,797,192	-				+0.1
3,797,209	+				-0.3
3,797,209	+				-0.1
3,797,210	-				-1.2
3,797,232	+				-0.1
3,797,233	-				-1.0
3,797,256	+				+0.3
3,797,256	+				+0.2
3,797,256	+				-0.3
3,797,256	+				-0.1
3,797,257	-				-1.0
3,797,257	-				+0.5
3,797,257	-				-0.7
3,797,257	-				+0.3
3,797,272	+				+0.7
3,797,273	-				-0.2
3,797,273	-				-1.6
3,797,291	+				-0.9
3,797,292	-				-0.5
3,797,292	-				+1.1
3,797,344	+				-0.6
3,797,344	+				-0.2
3,797,345	-		DZA65_RS17625	0.10	-1.5
3,797,345	-		DZA65_RS17625	0.10	-0.6
3,797,345	-		DZA65_RS17625	0.10	+0.4
3,797,410	+		DZA65_RS17625	0.40	+0.8
3,797,410	+		DZA65_RS17625	0.40	+1.2
3,797,411	-		DZA65_RS17625	0.40	+0.3
3,797,451	-		DZA65_RS17625	0.58	+1.7
3,797,451	-		DZA65_RS17625	0.58	+0.1
3,797,451	-		DZA65_RS17625	0.58	-0.2
3,797,505	+		DZA65_RS17625	0.82	+0.8
3,797,529	+				+1.8
3,797,530	-				+0.4
3,797,563	+				-0.9
3,797,563	+				+1.4
3,797,564	-				-0.4
3,797,564	-				-0.2
3,797,564	-				-0.7
3,797,595	-				-0.3
3,797,618	+				-1.2
3,797,637	-				+0.2
3,797,637	-				+0.9
3,797,639	+				+0.2
3,797,639	+				-0.1
3,797,640	-				+0.7
3,797,642	+				+0.1
3,797,643	-				+1.2
3,797,643	-				+0.4
3,797,643	-				-0.1
3,797,662	+				-0.0
3,797,662	+				+1.2
3,797,662	+				-1.4
3,797,662	+				-0.7
3,797,663	-				-2.4
3,797,663	-				+0.4
3,797,663	-				-0.9
3,797,663	-				-3.0
3,797,663	-				-0.1
3,797,693	+				-1.2
3,797,694	-				-0.1
3,797,694	-				-0.0
3,797,694	-				+0.2
3,797,798	+		DZA65_RS17630	0.16	-2.4
3,797,827	-		DZA65_RS17630	0.18	+0.3
3,797,834	+		DZA65_RS17630	0.19	-1.6
3,797,835	-		DZA65_RS17630	0.19	-3.0
3,797,881	+		DZA65_RS17630	0.22	+0.4
3,797,881	+		DZA65_RS17630	0.22	-0.4
3,797,881	+		DZA65_RS17630	0.22	+1.3
3,797,881	+		DZA65_RS17630	0.22	-0.4
3,797,888	+		DZA65_RS17630	0.23	+0.4
3,797,888	+		DZA65_RS17630	0.23	-1.4
3,797,889	-		DZA65_RS17630	0.23	-0.9
3,797,889	-		DZA65_RS17630	0.23	+0.5
3,797,889	-		DZA65_RS17630	0.23	-0.2
3,798,017	+		DZA65_RS17630	0.32	+2.2
3,798,018	-		DZA65_RS17630	0.32	-0.2
3,798,018	-		DZA65_RS17630	0.32	+0.2
3,798,137	+		DZA65_RS17630	0.40	-1.6
3,798,137	+		DZA65_RS17630	0.40	+0.1
3,798,137	+		DZA65_RS17630	0.40	+0.6
3,798,137	+		DZA65_RS17630	0.40	-0.4
3,798,137	+		DZA65_RS17630	0.40	+0.7
3,798,138	-		DZA65_RS17630	0.40	+0.7
3,798,157	+		DZA65_RS17630	0.41	+0.1
3,798,158	-		DZA65_RS17630	0.41	+1.4
3,798,158	-		DZA65_RS17630	0.41	+0.4
3,798,173	+		DZA65_RS17630	0.43	-0.0
3,798,174	-		DZA65_RS17630	0.43	+0.5
3,798,195	+		DZA65_RS17630	0.44	-0.1
3,798,196	-		DZA65_RS17630	0.44	-0.6
3,798,204	+		DZA65_RS17630	0.45	-1.8
3,798,204	+		DZA65_RS17630	0.45	-2.3
3,798,215	+		DZA65_RS17630	0.45	+1.1
3,798,216	-		DZA65_RS17630	0.46	-0.4
3,798,216	-		DZA65_RS17630	0.46	+0.1
3,798,219	+		DZA65_RS17630	0.46	-0.4
3,798,237	+		DZA65_RS17630	0.47	+0.1
3,798,237	+		DZA65_RS17630	0.47	-1.0
3,798,238	-		DZA65_RS17630	0.47	+0.4
3,798,258	+		DZA65_RS17630	0.48	-1.0
3,798,258	+		DZA65_RS17630	0.48	+1.3
3,798,258	+		DZA65_RS17630	0.48	-1.9
3,798,259	-		DZA65_RS17630	0.49	-0.6
3,798,259	-		DZA65_RS17630	0.49	-0.6
3,798,262	+		DZA65_RS17630	0.49	-1.4
3,798,262	+		DZA65_RS17630	0.49	-0.6
3,798,262	+		DZA65_RS17630	0.49	-2.4
3,798,263	-		DZA65_RS17630	0.49	-0.2
3,798,263	-		DZA65_RS17630	0.49	+0.7
3,798,279	+		DZA65_RS17630	0.50	-1.6