Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16835

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,636,466	+		DZA65_RS16830	0.84	+0.2
3,636,466	+		DZA65_RS16830	0.84	+0.8
3,636,466	+		DZA65_RS16830	0.84	-0.3
3,636,466	+		DZA65_RS16830	0.84	-0.6
3,636,466	+		DZA65_RS16830	0.84	+1.0
3,636,466	+		DZA65_RS16830	0.84	-0.6
3,636,466	+		DZA65_RS16830	0.84	-1.1
3,636,466	+				+1.4
3,636,466	+		DZA65_RS16830	0.84	-0.3
3,636,467	-		DZA65_RS16830	0.84	+1.4
3,636,467	-		DZA65_RS16830	0.84	+0.2
3,636,467	-		DZA65_RS16830	0.84	+0.1
3,636,467	-		DZA65_RS16830	0.84	-0.2
3,636,467	-		DZA65_RS16830	0.84	+0.4
3,636,467	-		DZA65_RS16830	0.84	+0.1
3,636,467	-		DZA65_RS16830	0.84	+0.6
3,636,467	-		DZA65_RS16830	0.84	+0.4
3,636,520	+		DZA65_RS16830	0.86	-0.7
3,636,520	+		DZA65_RS16830	0.86	-0.6
3,636,520	+		DZA65_RS16830	0.86	-0.9
3,636,520	+		DZA65_RS16830	0.86	-0.3
3,636,520	+		DZA65_RS16830	0.86	-2.4
3,636,521	-		DZA65_RS16830	0.86	-1.2
3,636,521	-		DZA65_RS16830	0.86	-1.2
3,636,748	+				-0.0
3,636,748	+				+0.4
3,636,749	-				-0.3
3,636,749	-				+0.4
3,636,797	+				-0.5
3,636,797	+				+0.7
3,636,797	+				-0.8
3,636,798	-				+0.8
3,636,904	+				-0.9
3,636,904	+				-1.9
3,636,904	+				+1.0
3,636,976	+				+1.9
3,636,976	+				+1.3
3,636,976	+				+0.4
3,636,985	+				+0.4
3,636,985	+				-0.4
3,636,986	-				+0.4
3,636,986	-				-0.4
3,636,986	-				+0.7
3,636,986	-				+1.4
3,637,006	+				-0.1
3,637,006	+				-0.6
3,637,006	+				-0.6
3,637,007	-				-0.6
3,637,007	-				-0.2
3,637,007	-				+0.0
3,637,007	-				-0.8
3,637,007	-				+0.8
3,637,009	+				-0.7
3,637,009	+				-2.6
3,637,009	+				-2.7
3,637,009	+				+0.3
3,637,009	+				-1.4
3,637,010	-				-0.6
3,637,010	-				+0.8
3,637,010	-				-0.8
3,637,010	-				-1.2
3,637,010	-				-2.2
3,637,010	-				+0.4
3,637,034	+				-0.6
3,637,074	+				+0.2
3,637,087	+				-1.4
3,637,134	+				-0.5
3,637,154	+				+0.6
3,637,154	+				+0.1
3,637,154	+				-1.6
3,637,155	-				-1.9
3,637,155	-				+0.4
3,637,157	+				+0.2
3,637,157	+				-1.8
3,637,157	+				-1.0
3,637,157	+				-0.6
3,637,157	+				+0.8
3,637,157	+				-1.4
3,637,157	+				-0.7
3,637,157	+				+0.3
3,637,158	-				+0.7
3,637,159	+				+0.1
3,637,159	+				-0.7
3,637,159	+				+0.2
3,637,160	-				-0.3
3,637,160	-				-0.8
3,637,166	+				+0.0
3,637,167	-				-0.3
3,637,167	-				-0.3
3,637,204	-				+0.3
3,637,234	+				-2.4
3,637,243	+				-2.6
3,637,244	-				-0.1
3,637,246	+				+0.4
3,637,246	+				+0.4
3,637,435	-				-0.6
3,637,435	-				+2.7
3,637,466	+				-0.3
3,637,466	+				-0.2
3,637,467	-				-1.9
3,637,525	+		DZA65_RS16835	0.11	-0.9
3,637,525	+		DZA65_RS16835	0.11	+0.8
3,637,525	+		DZA65_RS16835	0.11	+1.0
3,637,526	-		DZA65_RS16835	0.11	+0.5
3,637,526	-		DZA65_RS16835	0.11	-0.3
3,637,527	+		DZA65_RS16835	0.11	-0.1
3,637,527	+		DZA65_RS16835	0.11	+0.9
3,637,527	+		DZA65_RS16835	0.11	+1.5
3,637,528	-		DZA65_RS16835	0.12	+0.8
3,637,562	-		DZA65_RS16835	0.14	+0.1
3,637,562	-		DZA65_RS16835	0.14	+2.2
3,637,611	-		DZA65_RS16835	0.17	+1.4
3,637,638	-		DZA65_RS16835	0.19	+1.3
3,637,691	-		DZA65_RS16835	0.23	+1.0
3,637,691	-		DZA65_RS16835	0.23	-0.7
3,637,732	+		DZA65_RS16835	0.26	-0.0
3,637,732	+		DZA65_RS16835	0.26	-0.6
3,637,733	-		DZA65_RS16835	0.26	+0.7
3,637,733	-		DZA65_RS16835	0.26	-0.8
3,637,733	-		DZA65_RS16835	0.26	+0.6
3,637,733	-		DZA65_RS16835	0.26	+0.2
3,637,733	-		DZA65_RS16835	0.26	+0.3
3,637,736	-		DZA65_RS16835	0.26	+0.6
3,637,736	-		DZA65_RS16835	0.26	+0.1
3,637,871	-		DZA65_RS16835	0.35	+1.4
3,637,923	-		DZA65_RS16835	0.39	-0.2
3,637,951	+		DZA65_RS16835	0.41	-1.8
3,637,951	+		DZA65_RS16835	0.41	-0.1
3,637,970	+		DZA65_RS16835	0.42	-0.1
3,637,992	+		DZA65_RS16835	0.43	+0.3
3,637,992	+		DZA65_RS16835	0.43	-1.2
3,637,993	-		DZA65_RS16835	0.43	+1.5
3,638,050	+		DZA65_RS16835	0.47	-0.0
3,638,050	+		DZA65_RS16835	0.47	-0.9
3,638,050	+		DZA65_RS16835	0.47	+0.7
3,638,050	+		DZA65_RS16835	0.47	-0.2
3,638,050	+		DZA65_RS16835	0.47	+0.4
3,638,050	+		DZA65_RS16835	0.47	-0.7
3,638,050	+		DZA65_RS16835	0.47	+2.0
3,638,050	+		DZA65_RS16835	0.47	+0.6
3,638,050	+		DZA65_RS16835	0.47	+0.2
3,638,050	+		DZA65_RS16835	0.47	+0.3
3,638,051	-		DZA65_RS16835	0.47	+1.1
3,638,051	-		DZA65_RS16835	0.47	+0.4
3,638,051	-		DZA65_RS16835	0.47	-0.8
3,638,051	-		DZA65_RS16835	0.47	+0.4
3,638,051	-		DZA65_RS16835	0.47	+0.6
3,638,052	+		DZA65_RS16835	0.47	+0.7
3,638,052	+		DZA65_RS16835	0.47	+0.6
3,638,052	+		DZA65_RS16835	0.47	-2.3
3,638,052	+		DZA65_RS16835	0.47	+0.6
3,638,053	-		DZA65_RS16835	0.48	+0.6
3,638,150	-		DZA65_RS16835	0.54	+1.3
3,638,150	-		DZA65_RS16835	0.54	-0.6
3,638,150	-		DZA65_RS16835	0.54	+0.1
3,638,177	-				+1.1
3,638,177	-		DZA65_RS16835	0.56	-1.7
3,638,432	-		DZA65_RS16835	0.74	-0.5
3,638,432	-		DZA65_RS16835	0.74	+2.6
3,638,506	+		DZA65_RS16835	0.79	+0.5
3,638,507	-		DZA65_RS16835	0.79	+0.6
3,638,508	+		DZA65_RS16835	0.79	+0.6
3,638,509	-		DZA65_RS16835	0.79	-1.3
3,638,509	-		DZA65_RS16835	0.79	+2.3
3,638,509	-		DZA65_RS16835	0.79	+2.1
3,638,594	+		DZA65_RS16835	0.85	+1.1
3,638,594	+		DZA65_RS16835	0.85	+0.4
3,638,595	-		DZA65_RS16835	0.85	+0.6
3,638,595	-		DZA65_RS16835	0.85	+1.4
3,638,595	-				+1.7
3,638,623	+		DZA65_RS16835	0.87	+0.3
3,638,624	-		DZA65_RS16835	0.87	+1.1
3,638,668	+		DZA65_RS16835	0.90	+1.0
3,638,668	+		DZA65_RS16835	0.90	+0.4
3,638,669	-		DZA65_RS16835	0.90	+0.6
3,638,675	-				+1.0
3,638,695	+				+0.2
3,638,695	+				+1.4
3,638,695	+				-0.2
3,638,696	-				-0.3
3,638,696	-				+0.6
3,638,696	-				+1.4
3,638,697	+				+2.1
3,638,697	+				+1.5
3,638,698	-				+0.2
3,638,698	-				+0.4
3,638,770	+				-0.0
3,638,796	-				-0.9
3,639,324	-				-0.0
3,639,324	-				+0.8
3,639,324	-				-0.9
3,639,340	-				+0.4
3,639,340	-				-0.4
3,639,340	-				+0.4
3,639,340	-				+0.9
3,639,340	-				+0.4
3,639,340	-				-0.6
3,639,355	+				+1.0
3,639,355	+				-0.5
3,639,355	+				+0.8
3,639,355	+				-1.6
3,639,355	+				+1.7
3,639,355	+				+0.5
3,639,355	+				+1.0
3,639,355	+				-0.3
3,639,355	+				+0.1
3,639,355	+				-1.2
3,639,355	+				-1.0
3,639,356	-				-0.1
3,639,356	-				-0.9
3,639,356	-				+0.4
3,639,356	-				-2.0
3,639,356	-				-0.6
3,639,356	-				-0.0
3,639,356	-				+1.2
3,639,356	-				+0.3
3,639,356	-				-0.3
3,639,356	-				-0.9
3,639,356	-				+0.9
3,639,358	+				-1.8
3,639,358	+				-0.0
3,639,358	+				+1.7
3,639,358	+				+0.4
3,639,358	+				+0.7
3,639,358	+				+0.9
3,639,359	-				-1.3
3,639,413	-				-0.6
3,639,413	-				+0.9
3,639,413	-				-0.3
3,639,488	+		DZA65_RS16845	0.14	+0.7
3,639,489	-		DZA65_RS16845	0.14	-0.0
3,639,489	-		DZA65_RS16845	0.14	+0.6
3,639,497	-		DZA65_RS16845	0.15	-0.2
3,639,585	+		DZA65_RS16845	0.25	+1.0
3,639,585	+		DZA65_RS16845	0.25	-0.4
3,639,586	-		DZA65_RS16845	0.25	+0.5
3,639,586	-		DZA65_RS16845	0.25	-0.4
3,639,622	+		DZA65_RS16845	0.29	-3.6