Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15200

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,303,536	+		DZA65_RS15185	0.67	-2.0
3,303,536	+		DZA65_RS15185	0.67	+0.7
3,303,536	+		DZA65_RS15185	0.67	-1.8
3,303,536	+		DZA65_RS15185	0.67	-0.4
3,303,537	-		DZA65_RS15185	0.68	+0.3
3,303,537	-		DZA65_RS15185	0.68	+0.1
3,303,537	-		DZA65_RS15185	0.68	+1.3
3,303,537	-		DZA65_RS15185	0.68	+1.6
3,303,537	-		DZA65_RS15185	0.68	-0.0
3,303,537	-		DZA65_RS15185	0.68	-1.0
3,303,548	+		DZA65_RS15185	0.70	+0.9
3,303,549	-		DZA65_RS15185	0.70	-1.2
3,303,561	+		DZA65_RS15185	0.72	+0.3
3,303,561	+		DZA65_RS15185	0.72	-0.5
3,303,561	+		DZA65_RS15185	0.72	+0.2
3,303,561	+		DZA65_RS15185	0.72	-0.7
3,303,561	+		DZA65_RS15185	0.72	+1.8
3,303,562	-		DZA65_RS15185	0.73	-0.2
3,303,565	+		DZA65_RS15185	0.73	+0.3
3,303,565	+		DZA65_RS15185	0.73	-0.7
3,303,565	+		DZA65_RS15185	0.73	+1.5
3,303,565	+		DZA65_RS15185	0.73	+0.3
3,303,566	-		DZA65_RS15185	0.73	-0.1
3,303,585	+		DZA65_RS15185	0.77	+1.7
3,303,593	+		DZA65_RS15185	0.79	-0.5
3,303,593	+		DZA65_RS15185	0.79	-0.2
3,303,594	-		DZA65_RS15185	0.79	-1.2
3,303,594	-		DZA65_RS15185	0.79	-0.2
3,303,605	-		DZA65_RS15185	0.81	+1.6
3,303,605	-		DZA65_RS15185	0.81	+0.3
3,303,641	+		DZA65_RS15185	0.89	-1.0
3,303,642	-		DZA65_RS15185	0.89	+1.9
3,303,691	+				+1.5
3,303,692	-				-0.8
3,303,790	+		DZA65_RS15190	0.28	+1.3
3,303,804	-		DZA65_RS15190	0.32	-2.1
3,303,817	+		DZA65_RS15190	0.35	+0.8
3,303,817	+		DZA65_RS15190	0.35	-0.0
3,303,817	+		DZA65_RS15190	0.35	-1.5
3,303,817	+		DZA65_RS15190	0.35	-0.8
3,303,817	+		DZA65_RS15190	0.35	+0.1
3,303,817	+		DZA65_RS15190	0.35	-1.1
3,303,818	-		DZA65_RS15190	0.36	-0.4
3,303,818	-		DZA65_RS15190	0.36	+1.8
3,303,818	-		DZA65_RS15190	0.36	+1.1
3,303,875	+		DZA65_RS15190	0.51	+0.0
3,303,875	+		DZA65_RS15190	0.51	+0.1
3,303,875	+		DZA65_RS15190	0.51	-0.2
3,303,875	+		DZA65_RS15190	0.51	-0.1
3,303,875	+		DZA65_RS15190	0.51	-1.7
3,303,875	+		DZA65_RS15190	0.51	-0.2
3,303,875	+		DZA65_RS15190	0.51	+0.3
3,303,875	+		DZA65_RS15190	0.51	-0.4
3,303,876	-		DZA65_RS15190	0.52	+0.2
3,303,876	-		DZA65_RS15190	0.52	+0.6
3,303,876	-		DZA65_RS15190	0.52	+0.0
3,303,876	-		DZA65_RS15190	0.52	-0.5
3,303,876	-		DZA65_RS15190	0.52	+0.0
3,303,903	-		DZA65_RS15190	0.59	-0.3
3,303,906	+		DZA65_RS15190	0.60	+1.1
3,303,906	+		DZA65_RS15190	0.60	-0.7
3,303,906	+		DZA65_RS15190	0.60	+0.6
3,303,906	+		DZA65_RS15190	0.60	-0.7
3,303,906	+		DZA65_RS15190	0.60	-0.2
3,303,906	+		DZA65_RS15190	0.60	+0.2
3,303,906	+		DZA65_RS15190	0.60	-1.0
3,303,906	+		DZA65_RS15190	0.60	-0.1
3,303,906	+		DZA65_RS15190	0.60	+0.5
3,303,906	+		DZA65_RS15190	0.60	+0.5
3,303,907	-		DZA65_RS15190	0.60	-0.1
3,303,907	-		DZA65_RS15190	0.60	+0.0
3,303,907	-		DZA65_RS15190	0.60	-0.2
3,303,907	-		DZA65_RS15190	0.60	+0.3
3,303,907	-		DZA65_RS15190	0.60	+0.8
3,303,907	-		DZA65_RS15190	0.60	+0.5
3,303,907	-		DZA65_RS15190	0.60	-1.7
3,303,907	-		DZA65_RS15190	0.60	+0.1
3,303,907	-		DZA65_RS15190	0.60	-0.2
3,303,929	+		DZA65_RS15190	0.66	+1.9
3,303,929	+		DZA65_RS15190	0.66	-0.1
3,303,929	+		DZA65_RS15190	0.66	+0.2
3,303,929	+		DZA65_RS15190	0.66	-1.0
3,303,929	+		DZA65_RS15190	0.66	+2.3
3,303,929	+		DZA65_RS15190	0.66	+0.9
3,303,930	-		DZA65_RS15190	0.67	+0.8
3,303,930	-		DZA65_RS15190	0.67	-0.8
3,303,930	-		DZA65_RS15190	0.67	-0.2
3,304,130	+		DZA65_RS15195	0.14	-0.8
3,304,130	+		DZA65_RS15195	0.14	+1.0
3,304,130	+		DZA65_RS15195	0.14	-0.4
3,304,130	+		DZA65_RS15195	0.14	-0.0
3,304,130	+		DZA65_RS15195	0.14	+1.3
3,304,131	-		DZA65_RS15195	0.14	+1.0
3,304,131	-		DZA65_RS15195	0.14	+0.6
3,304,131	-		DZA65_RS15195	0.14	+0.8
3,304,131	-		DZA65_RS15195	0.14	+0.5
3,304,131	-		DZA65_RS15195	0.14	+0.2
3,304,465	+		DZA65_RS15195	0.85	-0.7
3,304,474	+		DZA65_RS15195	0.87	+1.1
3,304,474	+		DZA65_RS15195	0.87	+0.0
3,304,474	+		DZA65_RS15195	0.87	-0.4
3,304,474	+		DZA65_RS15195	0.87	-1.2
3,304,474	+		DZA65_RS15195	0.87	+1.1
3,304,474	+		DZA65_RS15195	0.87	+0.3
3,304,475	-		DZA65_RS15195	0.87	+0.6
3,304,475	-		DZA65_RS15195	0.87	+0.8
3,304,475	-		DZA65_RS15195	0.87	+0.3
3,304,475	-		DZA65_RS15195	0.87	-1.5
3,304,475	-		DZA65_RS15195	0.87	-1.8
3,304,519	+				+1.1
3,304,525	+				-0.7
3,304,554	+		DZA65_RS15200	0.11	-0.2
3,304,555	-		DZA65_RS15200	0.11	-0.2
3,304,555	-		DZA65_RS15200	0.11	-1.2
3,304,695	-		DZA65_RS15200	0.76	-1.7
3,304,695	-		DZA65_RS15200	0.76	-0.2
3,304,721	+		DZA65_RS15200	0.88	-0.4
3,304,819	+		DZA65_RS15205	0.22	+0.9
3,304,826	+		DZA65_RS15205	0.24	+1.3
3,304,827	-		DZA65_RS15205	0.25	+0.4
3,304,827	-		DZA65_RS15205	0.25	+1.0
3,304,827	-		DZA65_RS15205	0.25	-0.1
3,304,873	+		DZA65_RS15205	0.38	-1.5
3,304,874	-		DZA65_RS15205	0.39	-0.7
3,304,874	-		DZA65_RS15205	0.39	-1.2
3,304,916	+		DZA65_RS15205	0.52	-0.5
3,304,981	+		DZA65_RS15205	0.71	-3.0
3,304,981	+		DZA65_RS15205	0.71	-0.4
3,304,981	+		DZA65_RS15205	0.71	+0.2
3,304,981	+		DZA65_RS15205	0.71	+1.2
3,304,981	+		DZA65_RS15205	0.71	-2.2
3,304,981	+		DZA65_RS15205	0.71	-0.2
3,304,981	+		DZA65_RS15205	0.71	-0.2
3,304,981	+		DZA65_RS15205	0.71	-0.2
3,304,981	+		DZA65_RS15205	0.71	+1.6
3,304,981	+		DZA65_RS15205	0.71	+0.2
3,304,981	+		DZA65_RS15205	0.71	+0.3
3,304,981	+		DZA65_RS15205	0.71	-0.3
3,304,981	+		DZA65_RS15205	0.71	-0.2
3,304,982	-		DZA65_RS15205	0.72	+0.1
3,304,982	-		DZA65_RS15205	0.72	+0.9
3,304,982	-		DZA65_RS15205	0.72	-1.0
3,304,982	-		DZA65_RS15205	0.72	+0.8
3,304,982	-		DZA65_RS15205	0.72	+0.0
3,304,982	-		DZA65_RS15205	0.72	+0.3
3,304,982	-		DZA65_RS15205	0.72	+0.8
3,305,018	+		DZA65_RS15205	0.82	-1.5
3,305,018	+		DZA65_RS15205	0.82	-0.5
3,305,018	+		DZA65_RS15205	0.82	-2.5
3,305,018	+		DZA65_RS15205	0.82	-0.0
3,305,018	+		DZA65_RS15205	0.82	-0.7
3,305,018	+		DZA65_RS15205	0.82	-0.1
3,305,019	-		DZA65_RS15205	0.83	+0.1
3,305,019	-		DZA65_RS15205	0.83	-1.2
3,305,019	-		DZA65_RS15205	0.83	+0.8
3,305,019	-		DZA65_RS15205	0.83	+0.8
3,305,020	+		DZA65_RS15205	0.83	-1.0
3,305,020	+		DZA65_RS15205	0.83	-2.0
3,305,020	+		DZA65_RS15205	0.83	-0.9
3,305,020	+		DZA65_RS15205	0.83	-0.4
3,305,020	+		DZA65_RS15205	0.83	+0.6
3,305,020	+		DZA65_RS15205	0.83	-1.7
3,305,020	+		DZA65_RS15205	0.83	+0.6
3,305,020	+		DZA65_RS15205	0.83	-1.2
3,305,021	-		DZA65_RS15205	0.83	-0.2
3,305,021	-		DZA65_RS15205	0.83	+0.5
3,305,021	-		DZA65_RS15205	0.83	-2.5
3,305,021	-		DZA65_RS15205	0.83	+0.0
3,305,069	+				+0.7
3,305,069	+				-1.2
3,305,070	-				+0.6
3,305,070	-				-0.5
3,305,076	+				+1.2
3,305,076	+				-0.8
3,305,077	-				+1.3
3,305,077	-				-0.1
3,305,096	+				-1.6
3,305,097	-				+0.7
3,305,281	+		DZA65_RS15210	0.45	-0.3
3,305,281	+		DZA65_RS15210	0.45	-1.6
3,305,281	+		DZA65_RS15210	0.45	+0.4
3,305,281	+		DZA65_RS15210	0.45	-0.4
3,305,281	+		DZA65_RS15210	0.45	-2.8
3,305,282	-		DZA65_RS15210	0.45	+0.7
3,305,395	+		DZA65_RS15210	0.69	+1.6
3,305,395	+		DZA65_RS15210	0.69	+0.6
3,305,395	+		DZA65_RS15210	0.69	-0.3
3,305,396	-		DZA65_RS15210	0.69	-0.7
3,305,396	-		DZA65_RS15210	0.69	+1.0
3,305,399	+		DZA65_RS15210	0.70	-2.5
3,305,399	+		DZA65_RS15210	0.70	+0.1
3,305,399	+		DZA65_RS15210	0.70	-1.7
3,305,399	+		DZA65_RS15210	0.70	-1.2
3,305,399	+		DZA65_RS15210	0.70	-2.3
3,305,399	+		DZA65_RS15210	0.70	-1.1
3,305,399	+		DZA65_RS15210	0.70	+1.1
3,305,399	+		DZA65_RS15210	0.70	+0.8
3,305,399	+		DZA65_RS15210	0.70	+0.2
3,305,399	+		DZA65_RS15210	0.70	+0.8
3,305,400	-		DZA65_RS15210	0.70	+2.7
3,305,400	-		DZA65_RS15210	0.70	+0.8
3,305,400	-		DZA65_RS15210	0.70	+0.6
3,305,400	-		DZA65_RS15210	0.70	+1.1
3,305,403	+		DZA65_RS15210	0.71	-0.3
3,305,404	-		DZA65_RS15210	0.71	+0.8
3,305,416	+		DZA65_RS15210	0.74	-0.7
3,305,417	-		DZA65_RS15210	0.74	+0.3
3,305,417	-		DZA65_RS15210	0.74	-0.7
3,305,417	-		DZA65_RS15210	0.74	+1.4
3,305,417	-		DZA65_RS15210	0.74	-0.4
3,305,460	+		DZA65_RS15210	0.83	+0.5
3,305,460	+		DZA65_RS15210	0.83	-0.1
3,305,491	+				+0.2
3,305,491	+				+0.4
3,305,492	-				-0.7
3,305,524	+				+0.9
3,305,525	-				+0.1
3,305,527	+				-1.2
3,305,528	-				-0.8
3,305,528	-				+0.7
3,305,554	+				+0.5
3,305,560	+				-1.0
3,305,561	-				-0.7
3,305,619	-				-1.2
3,305,655	-		DZA65_RS15215	0.20	-1.0
3,305,691	+		DZA65_RS15215	0.39	-0.3