Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15120

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,294,505	+		DZA65_RS15115	0.24	-1.8
3,294,506	-		DZA65_RS15115	0.24	-1.1
3,294,506	-		DZA65_RS15115	0.24	-0.3
3,294,630	+		DZA65_RS15115	0.33	+1.3
3,294,631	-		DZA65_RS15115	0.33	+0.0
3,294,643	-		DZA65_RS15115	0.34	-0.8
3,294,691	-		DZA65_RS15115	0.38	-1.1
3,294,691	-		DZA65_RS15115	0.38	+0.6
3,294,709	+		DZA65_RS15115	0.39	+0.7
3,294,782	+		DZA65_RS15115	0.45	+0.0
3,294,782	+		DZA65_RS15115	0.45	+0.0
3,294,783	-		DZA65_RS15115	0.45	+0.5
3,294,783	-		DZA65_RS15115	0.45	-0.7
3,294,824	+		DZA65_RS15115	0.48	-0.2
3,294,824	+		DZA65_RS15115	0.48	-0.7
3,294,824	+		DZA65_RS15115	0.48	+1.2
3,294,824	+		DZA65_RS15115	0.48	-1.2
3,294,824	+		DZA65_RS15115	0.48	-1.0
3,294,824	+		DZA65_RS15115	0.48	+0.1
3,294,824	+		DZA65_RS15115	0.48	-2.2
3,294,824	+		DZA65_RS15115	0.48	-0.4
3,294,824	+		DZA65_RS15115	0.48	+1.0
3,294,824	+		DZA65_RS15115	0.48	+0.3
3,294,824	+		DZA65_RS15115	0.48	+0.4
3,294,824	+		DZA65_RS15115	0.48	-0.1
3,294,824	+		DZA65_RS15115	0.48	-2.0
3,294,825	-		DZA65_RS15115	0.48	+0.7
3,294,825	-		DZA65_RS15115	0.48	+0.1
3,294,825	-		DZA65_RS15115	0.48	-0.4
3,294,825	-		DZA65_RS15115	0.48	+0.2
3,294,825	-		DZA65_RS15115	0.48	-0.0
3,294,825	-		DZA65_RS15115	0.48	-0.7
3,294,825	-		DZA65_RS15115	0.48	+0.8
3,294,825	-		DZA65_RS15115	0.48	+0.3
3,294,825	-		DZA65_RS15115	0.48	-0.2
3,294,825	-		DZA65_RS15115	0.48	-0.7
3,294,825	-		DZA65_RS15115	0.48	+0.1
3,294,825	-		DZA65_RS15115	0.48	-0.2
3,294,825	-		DZA65_RS15115	0.48	-0.1
3,294,826	+		DZA65_RS15115	0.48	-0.3
3,294,826	+		DZA65_RS15115	0.48	-0.4
3,294,826	+		DZA65_RS15115	0.48	-2.7
3,294,826	+		DZA65_RS15115	0.48	-0.6
3,294,826	+		DZA65_RS15115	0.48	-0.8
3,294,826	+		DZA65_RS15115	0.48	-0.4
3,294,826	+		DZA65_RS15115	0.48	-0.0
3,294,827	-		DZA65_RS15115	0.48	+0.3
3,294,827	-		DZA65_RS15115	0.48	+0.9
3,294,827	-		DZA65_RS15115	0.48	-0.7
3,294,827	-		DZA65_RS15115	0.48	-0.5
3,294,827	-		DZA65_RS15115	0.48	-1.2
3,294,827	-		DZA65_RS15115	0.48	-1.4
3,294,827	-		DZA65_RS15115	0.48	+0.9
3,294,827	-		DZA65_RS15115	0.48	-0.5
3,294,978	-		DZA65_RS15115	0.59	-1.0
3,294,978	-		DZA65_RS15115	0.59	+2.3
3,294,992	+		DZA65_RS15115	0.60	+0.6
3,294,993	-		DZA65_RS15115	0.60	+0.3
3,294,993	-		DZA65_RS15115	0.60	+0.5
3,294,996	+		DZA65_RS15115	0.61	-1.2
3,294,996	+		DZA65_RS15115	0.61	-0.4
3,294,996	+		DZA65_RS15115	0.61	+0.1
3,294,996	+		DZA65_RS15115	0.61	-0.1
3,294,996	+		DZA65_RS15115	0.61	-2.2
3,294,996	+		DZA65_RS15115	0.61	+0.3
3,294,996	+		DZA65_RS15115	0.61	+0.7
3,294,996	+		DZA65_RS15115	0.61	+0.7
3,294,996	+		DZA65_RS15115	0.61	-0.2
3,294,997	-		DZA65_RS15115	0.61	-0.5
3,294,997	-		DZA65_RS15115	0.61	+0.5
3,294,997	-		DZA65_RS15115	0.61	-0.8
3,294,997	-		DZA65_RS15115	0.61	+0.2
3,294,997	-		DZA65_RS15115	0.61	+0.3
3,294,997	-		DZA65_RS15115	0.61	-0.3
3,294,997	-		DZA65_RS15115	0.61	-0.7
3,294,997	-		DZA65_RS15115	0.61	+0.9
3,294,997	-		DZA65_RS15115	0.61	-1.2
3,295,032	-		DZA65_RS15115	0.63	-1.0
3,295,039	-		DZA65_RS15115	0.64	-0.2
3,295,039	-		DZA65_RS15115	0.64	+0.5
3,295,039	-		DZA65_RS15115	0.64	+0.3
3,295,039	-		DZA65_RS15115	0.64	+0.3
3,295,068	+		DZA65_RS15115	0.66	-1.0
3,295,095	-		DZA65_RS15115	0.68	-0.2
3,295,145	+		DZA65_RS15115	0.72	+0.5
3,295,145	+		DZA65_RS15115	0.72	-0.1
3,295,145	+		DZA65_RS15115	0.72	-0.7
3,295,145	+		DZA65_RS15115	0.72	+1.3
3,295,158	+		DZA65_RS15115	0.73	+0.0
3,295,328	-		DZA65_RS15115	0.86	-0.1
3,295,328	-				+0.8
3,295,436	+				-1.1
3,295,455	-				-0.2
3,295,455	-				-0.4
3,295,455	-				+0.2
3,295,455	-				+0.1
3,295,490	+				+0.6
3,295,490	+				-1.4
3,295,491	-				+0.3
3,295,541	+				-0.5
3,295,541	+				-0.1
3,295,542	-				-2.5
3,295,542	-				-0.1
3,295,542	-				-1.7
3,295,597	-				+0.6
3,295,668	-		DZA65_RS15120	0.10	+0.2
3,295,768	+		DZA65_RS15120	0.17	+0.7
3,295,768	+		DZA65_RS15120	0.17	+1.2
3,295,769	-		DZA65_RS15120	0.17	+0.4
3,295,769	-		DZA65_RS15120	0.17	-0.8
3,295,889	+		DZA65_RS15120	0.24	+0.2
3,295,889	+		DZA65_RS15120	0.24	-0.5
3,295,889	+		DZA65_RS15120	0.24	+0.3
3,295,889	+		DZA65_RS15120	0.24	+2.3
3,295,889	+		DZA65_RS15120	0.24	-1.2
3,295,890	-		DZA65_RS15120	0.24	+0.0
3,295,890	-		DZA65_RS15120	0.24	-1.0
3,295,890	-		DZA65_RS15120	0.24	+1.1
3,295,890	-		DZA65_RS15120	0.24	+0.8
3,295,890	-		DZA65_RS15120	0.24	+0.5
3,295,890	-		DZA65_RS15120	0.24	+0.1
3,295,890	-		DZA65_RS15120	0.24	+0.7
3,295,890	-		DZA65_RS15120	0.24	-0.8
3,295,915	+		DZA65_RS15120	0.26	+1.1
3,295,936	+		DZA65_RS15120	0.27	+1.3
3,295,936	+		DZA65_RS15120	0.27	+0.2
3,295,954	+		DZA65_RS15120	0.28	-0.6
3,295,954	+		DZA65_RS15120	0.28	-0.1
3,295,954	+		DZA65_RS15120	0.28	-0.8
3,295,954	+		DZA65_RS15120	0.28	-0.7
3,295,954	+		DZA65_RS15120	0.28	-1.8
3,295,955	-		DZA65_RS15120	0.29	-2.0
3,295,955	-		DZA65_RS15120	0.29	+0.2
3,295,955	-		DZA65_RS15120	0.29	+0.5
3,295,955	-		DZA65_RS15120	0.29	-0.4
3,295,955	-		DZA65_RS15120	0.29	+0.6
3,295,960	+		DZA65_RS15120	0.29	+0.8
3,295,960	+		DZA65_RS15120	0.29	+1.8
3,295,961	-		DZA65_RS15120	0.29	-0.8
3,295,961	-		DZA65_RS15120	0.29	+1.6
3,296,019	+		DZA65_RS15120	0.33	-1.0
3,296,019	+		DZA65_RS15120	0.33	-0.4
3,296,056	+		DZA65_RS15120	0.35	+0.5
3,296,056	+		DZA65_RS15120	0.35	-0.8
3,296,069	+		DZA65_RS15120	0.36	+1.5
3,296,069	+		DZA65_RS15120	0.36	-0.7
3,296,069	+		DZA65_RS15120	0.36	-0.8
3,296,070	-		DZA65_RS15120	0.36	-0.1
3,296,114	-		DZA65_RS15120	0.39	-1.4
3,296,180	+		DZA65_RS15120	0.43	-1.0
3,296,224	+		DZA65_RS15120	0.46	-0.2
3,296,225	-		DZA65_RS15120	0.46	+0.3
3,296,225	-		DZA65_RS15120	0.46	-0.3
3,296,225	-		DZA65_RS15120	0.46	+1.2
3,296,225	-		DZA65_RS15120	0.46	+1.3
3,296,225	-		DZA65_RS15120	0.46	-0.3
3,296,225	-		DZA65_RS15120	0.46	+1.1
3,296,225	-		DZA65_RS15120	0.46	+0.5
3,296,225	-		DZA65_RS15120	0.46	-0.2
3,296,225	-		DZA65_RS15120	0.46	+0.5
3,296,364	+		DZA65_RS15120	0.54	+0.7
3,296,364	+		DZA65_RS15120	0.54	-2.2
3,296,364	+		DZA65_RS15120	0.54	+0.2
3,296,364	+		DZA65_RS15120	0.54	+0.6
3,296,364	+		DZA65_RS15120	0.54	+0.3
3,296,364	+		DZA65_RS15120	0.54	+0.6
3,296,364	+		DZA65_RS15120	0.54	+0.8
3,296,364	+		DZA65_RS15120	0.54	-1.7
3,296,364	+		DZA65_RS15120	0.54	-0.7
3,296,364	+		DZA65_RS15120	0.54	+2.5
3,296,364	+		DZA65_RS15120	0.54	+0.2
3,296,365	-		DZA65_RS15120	0.54	+0.3
3,296,365	-		DZA65_RS15120	0.54	+0.7
3,296,365	-		DZA65_RS15120	0.54	-0.1
3,296,365	-		DZA65_RS15120	0.54	-2.7
3,296,365	-		DZA65_RS15120	0.54	-0.8
3,296,365	-		DZA65_RS15120	0.54	-1.0
3,296,365	-		DZA65_RS15120	0.54	-1.1
3,296,365	-		DZA65_RS15120	0.54	+0.1
3,296,365	-		DZA65_RS15120	0.54	+0.0
3,296,365	-		DZA65_RS15120	0.54	-0.3
3,296,365	-		DZA65_RS15120	0.54	+1.8
3,296,392	-		DZA65_RS15120	0.56	+0.5
3,296,442	+		DZA65_RS15120	0.59	+0.3
3,296,442	+		DZA65_RS15120	0.59	-0.1
3,296,463	+		DZA65_RS15120	0.61	+0.6
3,296,464	-		DZA65_RS15120	0.61	+0.6
3,296,464	-		DZA65_RS15120	0.61	+0.3
3,296,482	+		DZA65_RS15120	0.62	+0.8
3,296,482	+		DZA65_RS15120	0.62	+0.9
3,296,484	+		DZA65_RS15120	0.62	-0.8
3,296,485	-		DZA65_RS15120	0.62	-1.0
3,296,510	+		DZA65_RS15120	0.64	-0.3
3,296,511	-		DZA65_RS15120	0.64	-1.2
3,296,511	-		DZA65_RS15120	0.64	+1.0
3,296,627	-		DZA65_RS15120	0.71	+0.3
3,296,666	+		DZA65_RS15120	0.74	+0.1
3,296,666	+		DZA65_RS15120	0.74	-0.2
3,296,711	+		DZA65_RS15120	0.76	+0.1
3,296,711	+		DZA65_RS15120	0.76	+1.7
3,296,711	+		DZA65_RS15120	0.76	-2.0
3,296,712	-		DZA65_RS15120	0.76	+0.4
3,296,712	-		DZA65_RS15120	0.76	-2.0
3,296,809	+		DZA65_RS15120	0.83	+0.3
3,296,861	+		DZA65_RS15120	0.86	-1.7
3,296,861	+		DZA65_RS15120	0.86	-2.0
3,296,861	+		DZA65_RS15120	0.86	+2.9
3,296,862	-		DZA65_RS15120	0.86	-1.7
3,296,862	-		DZA65_RS15120	0.86	+0.6
3,296,884	+		DZA65_RS15120	0.87	+0.7
3,296,884	+		DZA65_RS15120	0.87	+0.1
3,296,884	+		DZA65_RS15120	0.87	-1.2
3,296,885	-		DZA65_RS15120	0.87	-1.8
3,296,915	-		DZA65_RS15120	0.89	+0.2
3,296,999	+				-0.2
3,296,999	+				-0.6
3,296,999	+				+0.3
3,296,999	+				+0.1
3,296,999	+				+0.5
3,296,999	+				-0.7
3,296,999	+				+0.8
3,296,999	+				-0.2
3,296,999	+				-0.4
3,296,999	+				-0.2
3,297,000	-				-1.2
3,297,000	-				+0.6
3,297,000	-				+0.2
3,297,000	-				-0.7
3,297,000	-				-1.1
3,297,000	-				-0.5
3,297,000	-				+0.7
3,297,000	-				-0.3
3,297,000	-				+0.6
3,297,071	+				-1.2
3,297,071	+				+0.9
3,297,071	+				-2.5
3,297,071	+				+0.8
3,297,071	+				+1.3
3,297,071	+				-0.3
3,297,071	+				+0.9
3,297,071	+				-0.1
3,297,071	+				-1.1
3,297,071	+				-1.0
3,297,072	-				+0.0
3,297,072	-				+1.0
3,297,072	-				-0.5
3,297,072	-				+0.9
3,297,072	-				+1.2
3,297,072	-				+1.3
3,297,072	-				+0.1
3,297,072	-				-0.5
3,297,072	-				-0.8
3,297,072	-				+0.3
3,297,072	-				+0.4
3,297,072	-				-0.0
3,297,072	-				+1.7
3,297,072	-				-0.7
3,297,084	+				-1.6
3,297,084	+				+0.6
3,297,084	+				+0.5
3,297,084	+				-0.4
3,297,085	-				+0.9
3,297,085	-				-2.1
3,297,085	-				-1.0
3,297,085	-				-2.0
3,297,085	-				-0.9
3,297,085	-				+0.7
3,297,085	-				-0.7
3,297,085	-				-0.2
3,297,188	-				+0.3
3,297,232	+				-1.2
3,297,232	+				-0.3
3,297,233	-				-2.2
3,297,233	-				+0.0
3,297,233	-				-0.3
3,297,233	-				-0.8
3,297,269	-		DZA65_RS15125	0.11	+0.3
3,297,269	-		DZA65_RS15125	0.11	+0.9
3,297,377	-		DZA65_RS15125	0.17	+1.6
3,297,495	+		DZA65_RS15125	0.24	-0.2
3,297,496	-		DZA65_RS15125	0.24	+0.1
3,297,496	-		DZA65_RS15125	0.24	+0.2
3,297,496	-		DZA65_RS15125	0.24	+0.5
3,297,629	-		DZA65_RS15125	0.32	-0.4
3,297,671	+		DZA65_RS15125	0.35	-0.9
3,297,671	+		DZA65_RS15125	0.35	-1.0
3,297,671	+		DZA65_RS15125	0.35	+0.8
3,297,671	+		DZA65_RS15125	0.35	-0.4
3,297,672	-		DZA65_RS15125	0.35	-0.1
3,297,672	-		DZA65_RS15125	0.35	+0.9
3,297,682	+		DZA65_RS15125	0.35	+0.8
3,297,682	+		DZA65_RS15125	0.35	-0.2
3,297,683	-		DZA65_RS15125	0.35	+0.1
3,297,683	-		DZA65_RS15125	0.35	+0.3
3,297,712	+		DZA65_RS15125	0.37	-0.7
3,297,737	+		DZA65_RS15125	0.39	+0.9
3,297,737	+		DZA65_RS15125	0.39	+1.1
3,297,737	+		DZA65_RS15125	0.39	+0.7
3,297,737	+		DZA65_RS15125	0.39	+0.2
3,297,737	+		DZA65_RS15125	0.39	+0.7
3,297,738	-		DZA65_RS15125	0.39	+1.8
3,297,738	-		DZA65_RS15125	0.39	+0.3
3,297,738	-		DZA65_RS15125	0.39	-0.7
3,297,811	+		DZA65_RS15125	0.43	-0.7
3,297,811	+		DZA65_RS15125	0.43	-0.2
3,297,859	+		DZA65_RS15125	0.46	-0.1
3,297,870	+		DZA65_RS15125	0.46	-0.5
3,297,871	-		DZA65_RS15125	0.46	+0.3
3,297,908	-		DZA65_RS15125	0.49	-0.7
3,297,946	+		DZA65_RS15125	0.51	+0.8
3,297,946	+		DZA65_RS15125	0.51	-2.0
3,297,946	+		DZA65_RS15125	0.51	-0.3
3,297,947	-				+1.1
3,297,947	-		DZA65_RS15125	0.51	+0.4
3,297,947	-		DZA65_RS15125	0.51	-0.2
3,297,947	-		DZA65_RS15125	0.51	-1.2
3,297,947	-		DZA65_RS15125	0.51	+0.3
3,297,947	-		DZA65_RS15125	0.51	-0.4
3,297,947	-		DZA65_RS15125	0.51	-2.7
3,297,947	-		DZA65_RS15125	0.51	-2.5
3,297,947	-		DZA65_RS15125	0.51	-1.0
3,298,029	+		DZA65_RS15125	0.56	+0.4
3,298,030	-		DZA65_RS15125	0.56	-0.1
3,298,050	+				+0.9
3,298,050	+		DZA65_RS15125	0.57	-1.0
3,298,050	+		DZA65_RS15125	0.57	-1.1
3,298,050	+		DZA65_RS15125	0.57	+1.5
3,298,050	+		DZA65_RS15125	0.57	-1.7
3,298,050	+		DZA65_RS15125	0.57	-0.1
3,298,051	-		DZA65_RS15125	0.57	-0.7
3,298,051	-		DZA65_RS15125	0.57	-0.2
3,298,051	-		DZA65_RS15125	0.57	-2.0