Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14825

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,229,548	+				-0.5
3,229,549	-				-0.9
3,229,623	-				+0.5
3,229,623	-				-0.9
3,229,689	+				-1.7
3,229,689	+				-1.0
3,229,689	+				+1.0
3,229,689	+				+0.6
3,229,689	+				-1.7
3,229,690	-				-1.0
3,229,690	-				+0.3
3,229,690	-				-0.5
3,229,690	-				+0.6
3,229,690	-				-1.5
3,229,690	-				-0.9
3,229,715	+				-1.2
3,229,731	-				-0.9
3,229,742	+				-1.7
3,229,742	+				-1.5
3,229,743	-				-0.1
3,229,743	-				-0.0
3,229,849	+		DZA65_RS14820	0.20	+1.2
3,229,849	+		DZA65_RS14820	0.20	+0.8
3,229,849	+		DZA65_RS14820	0.20	+2.3
3,229,857	+		DZA65_RS14820	0.22	+0.3
3,229,857	+		DZA65_RS14820	0.22	-0.0
3,229,858	-		DZA65_RS14820	0.22	+0.1
3,229,858	-		DZA65_RS14820	0.22	+0.7
3,229,928	+		DZA65_RS14820	0.33	-1.2
3,229,928	+		DZA65_RS14820	0.33	-0.1
3,229,929	-				-0.4
3,229,948	+		DZA65_RS14820	0.36	+1.3
3,229,949	-		DZA65_RS14820	0.36	+1.3
3,229,998	-		DZA65_RS14820	0.44	+0.3
3,230,034	-		DZA65_RS14820	0.50	-0.4
3,230,034	-		DZA65_RS14820	0.50	-0.1
3,230,034	-		DZA65_RS14820	0.50	+0.3
3,230,063	+		DZA65_RS14820	0.54	+0.3
3,230,064	-		DZA65_RS14820	0.54	+0.3
3,230,132	-		DZA65_RS14820	0.65	+1.3
3,230,136	+		DZA65_RS14820	0.66	+0.8
3,230,136	+		DZA65_RS14820	0.66	-0.1
3,230,136	+		DZA65_RS14820	0.66	-1.2
3,230,136	+		DZA65_RS14820	0.66	-0.9
3,230,306	+				+0.3
3,230,307	-				+0.0
3,230,326	+				-0.1
3,230,326	+				+0.2
3,230,393	-				+0.4
3,230,413	+				+0.6
3,230,413	+				+0.6
3,230,413	+				+0.8
3,230,413	+				+0.3
3,230,413	+				+0.9
3,230,413	+				-0.7
3,230,413	+				+0.9
3,230,413	+				-0.3
3,230,413	+				-2.0
3,230,413	+				+0.9
3,230,413	+				+0.8
3,230,413	+				+0.2
3,230,413	+				-0.2
3,230,414	-				-0.7
3,230,414	-				+1.1
3,230,414	-				-0.4
3,230,414	-				+1.3
3,230,414	-				+0.3
3,230,414	-				+0.0
3,230,414	-				-1.7
3,230,417	+				+1.6
3,230,417	+				-0.4
3,230,417	+				+0.5
3,230,418	-				+0.0
3,230,418	-				-0.4
3,230,418	-				-1.2
3,230,418	-				-1.7
3,230,426	-				+1.6
3,230,535	-		DZA65_RS14825	0.21	-0.1
3,230,563	+		DZA65_RS14825	0.25	-0.8
3,230,563	+		DZA65_RS14825	0.25	-0.7
3,230,563	+		DZA65_RS14825	0.25	-1.1
3,230,563	+		DZA65_RS14825	0.25	+1.5
3,230,564	-		DZA65_RS14825	0.25	-0.7
3,230,564	-		DZA65_RS14825	0.25	+0.3
3,230,564	-		DZA65_RS14825	0.25	+1.8
3,230,567	+		DZA65_RS14825	0.25	+0.9
3,230,567	+		DZA65_RS14825	0.25	-1.2
3,230,567	+		DZA65_RS14825	0.25	+1.0
3,230,567	+		DZA65_RS14825	0.25	-0.1
3,230,567	+		DZA65_RS14825	0.25	+0.0
3,230,567	+		DZA65_RS14825	0.25	-0.6
3,230,567	+		DZA65_RS14825	0.25	-0.9
3,230,567	+		DZA65_RS14825	0.25	+0.5
3,230,567	+				+0.3
3,230,567	+		DZA65_RS14825	0.25	-0.9
3,230,568	-		DZA65_RS14825	0.25	-0.2
3,230,568	-		DZA65_RS14825	0.25	-0.9
3,230,568	-		DZA65_RS14825	0.25	+1.5
3,230,568	-		DZA65_RS14825	0.25	+1.9
3,230,568	-		DZA65_RS14825	0.25	+0.7
3,230,568	-		DZA65_RS14825	0.25	+0.5
3,230,568	-		DZA65_RS14825	0.25	+0.1
3,230,568	-		DZA65_RS14825	0.25	+1.2
3,230,568	-		DZA65_RS14825	0.25	-0.7
3,230,568	-		DZA65_RS14825	0.25	+0.4
3,230,568	-		DZA65_RS14825	0.25	-0.5
3,230,568	-				-1.7
3,230,568	-		DZA65_RS14825	0.25	+2.6
3,230,568	-		DZA65_RS14825	0.25	+0.4
3,230,604	-		DZA65_RS14825	0.29	-1.2
3,230,771	+		DZA65_RS14825	0.48	-1.7
3,230,771	+		DZA65_RS14825	0.48	-0.2
3,230,771	+		DZA65_RS14825	0.48	+1.1
3,230,771	+		DZA65_RS14825	0.48	+1.1
3,230,772	-		DZA65_RS14825	0.48	-1.5
3,230,772	-		DZA65_RS14825	0.48	+1.4
3,230,772	-		DZA65_RS14825	0.48	+0.7
3,231,037	-		DZA65_RS14825	0.77	+0.8
3,231,222	+				-1.9
3,231,222	+				-3.0
3,231,222	+				-0.4
3,231,222	+				-1.2
3,231,223	-				-0.0
3,231,223	-				+0.7
3,231,223	-				+0.6
3,231,223	-				+1.9
3,231,223	-				+0.5
3,231,223	-				-0.1
3,231,223	-				+0.2
3,231,223	-				-0.0
3,231,243	+				-0.2
3,231,244	-				+0.7
3,231,293	+				-0.1
3,231,293	+				-2.4
3,231,293	+				+0.4
3,231,293	+				+0.2
3,231,293	+				-1.0
3,231,293	+				-0.1
3,231,294	-				+0.6
3,231,294	-				-0.8
3,231,339	+				-1.0
3,231,340	-				+0.9
3,231,348	+				-1.2
3,231,349	-				-0.1
3,231,424	-				-1.0
3,231,438	+				-0.2
3,231,468	+				+1.9
3,231,468	+				+0.6
3,231,468	+				+0.3
3,231,468	+				-0.2
3,231,468	+				-1.7
3,231,468	+				+0.0
3,231,468	+				+0.1
3,231,468	+				+0.2
3,231,468	+				+0.3
3,231,468	+				-0.9
3,231,468	+				-0.4
3,231,468	+				-1.5
3,231,468	+				+0.6
3,231,468	+				+0.5
3,231,468	+				-0.4
3,231,468	+				-1.1
3,231,468	+				-0.0
3,231,468	+				-0.6
3,231,469	-				-1.2
3,231,469	-				+0.8
3,231,469	-				+0.1
3,231,469	-				-0.6
3,231,469	-				+0.5
3,231,469	-				+0.2
3,231,469	-				+1.6
3,231,469	-				+0.7
3,231,469	-				+0.8
3,231,469	-				+0.7
3,231,469	-				-1.8
3,231,469	-				+1.3
3,231,469	-				-0.9
3,231,469	-				+0.1
3,231,469	-				-0.1
3,231,469	-				-0.7
3,231,469	-				+1.2
3,231,469	-				+0.1
3,231,469	-				+2.5
3,231,469	-				+0.6
3,231,469	-				+1.9
3,231,469	-				+1.3
3,231,470	+				+0.2
3,231,470	+				-0.1
3,231,470	+				-1.4
3,231,470	+				+0.1
3,231,470	+				+0.8
3,231,471	-				+0.7
3,231,471	-				+0.6
3,231,471	-				-1.4
3,231,471	-				+1.1
3,231,471	-				+1.0
3,231,623	+		DZA65_RS14830	0.12	+0.5
3,231,623	+		DZA65_RS14830	0.12	+0.4
3,231,623	+		DZA65_RS14830	0.12	-1.0
3,231,624	-		DZA65_RS14830	0.12	-0.1
3,231,624	-		DZA65_RS14830	0.12	+2.0
3,231,652	+		DZA65_RS14830	0.13	+0.0
3,231,663	+		DZA65_RS14830	0.13	+0.6
3,231,664	-		DZA65_RS14830	0.13	+1.2
3,231,664	-		DZA65_RS14830	0.13	+1.2
3,231,665	+		DZA65_RS14830	0.13	-0.9
3,231,665	+		DZA65_RS14830	0.13	+0.9
3,231,665	+		DZA65_RS14830	0.13	+2.3
3,231,665	+		DZA65_RS14830	0.13	+1.5
3,231,665	+		DZA65_RS14830	0.13	+1.7
3,231,665	+		DZA65_RS14830	0.13	-0.4
3,231,665	+		DZA65_RS14830	0.13	-0.4
3,231,666	-		DZA65_RS14830	0.13	+0.3
3,231,666	-		DZA65_RS14830	0.13	+1.4
3,231,666	-		DZA65_RS14830	0.13	-0.4
3,231,666	-				-1.2
3,231,666	-		DZA65_RS14830	0.13	+0.2
3,231,666	-		DZA65_RS14830	0.13	+0.7
3,231,666	-		DZA65_RS14830	0.13	-0.8
3,231,666	-		DZA65_RS14830	0.13	+0.1
3,231,666	-		DZA65_RS14830	0.13	-1.7
3,231,666	-		DZA65_RS14830	0.13	-0.8
3,231,687	+		DZA65_RS14830	0.14	-0.1
3,231,687	+		DZA65_RS14830	0.14	-2.2
3,231,688	-		DZA65_RS14830	0.14	-1.1
3,231,719	+		DZA65_RS14830	0.15	-0.7
3,231,719	+		DZA65_RS14830	0.15	+0.7
3,231,758	+		DZA65_RS14830	0.16	+0.3
3,231,759	-		DZA65_RS14830	0.16	+0.4
3,231,759	-		DZA65_RS14830	0.16	-0.2
3,231,759	-		DZA65_RS14830	0.16	+0.7
3,231,759	-		DZA65_RS14830	0.16	-0.9
3,232,185	+		DZA65_RS14830	0.30	-0.5
3,232,193	+		DZA65_RS14830	0.31	+0.6
3,232,193	+		DZA65_RS14830	0.31	-0.7