Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14720

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,200,747	-		DZA65_RS14715	0.28	+0.3
3,201,035	-		DZA65_RS14715	0.61	-0.7
3,201,278	+		DZA65_RS14715	0.88	+0.7
3,201,382	+				+0.7
3,201,430	+				-0.0
3,201,430	+				-0.3
3,201,430	+				+0.6
3,201,434	+				-1.2
3,201,434	+				+0.6
3,201,434	+				+0.6
3,201,435	-				-0.5
3,201,435	-				-0.8
3,201,438	+				-2.5
3,201,438	+				-0.9
3,201,438	+				+1.6
3,201,439	-				+0.5
3,201,439	-				+1.7
3,201,439	-				-0.8
3,201,439	-				+0.3
3,201,458	+				+0.1
3,201,458	+				-1.0
3,201,459	-				-0.9
3,201,459	-				-0.1
3,201,459	-				+0.3
3,201,462	+				+0.2
3,201,462	+				+0.8
3,201,462	+				+0.3
3,201,462	+				+0.5
3,201,463	-				-0.5
3,201,463	-				-0.2
3,201,463	-				-0.5
3,201,497	+				+1.1
3,201,498	-				+0.7
3,201,572	+				-0.3
3,201,572	+				+0.7
3,201,572	+				-0.1
3,201,572	+				+0.9
3,201,572	+				+0.5
3,201,572	+				+0.2
3,201,572	+				+0.1
3,201,572	+				+0.5
3,201,572	+				+1.0
3,201,572	+				-1.4
3,201,572	+				-0.1
3,201,572	+				-1.2
3,201,572	+				-0.7
3,201,572	+				-0.6
3,201,573	-				+0.9
3,201,573	-				-0.4
3,201,573	-				-0.7
3,201,573	-				+0.2
3,201,573	-				+0.6
3,201,573	-				-2.0
3,201,573	-				+0.7
3,201,573	-				+0.8
3,201,573	-				+0.0
3,201,573	-				+0.2
3,201,573	-				-1.1
3,201,573	-				-1.4
3,201,573	-				+0.3
3,201,626	+				+0.1
3,201,626	+				-0.5
3,201,627	-				+0.2
3,201,629	+				-0.4
3,201,654	+				+0.3
3,201,670	+				+1.0
3,201,670	+				+1.6
3,201,671	-				-0.4
3,201,681	+				+0.1
3,201,681	+				-0.7
3,201,682	-				-1.0
3,201,682	-				-0.1
3,201,682	-				-1.4
3,201,694	-				-0.1
3,201,700	+				+1.9
3,201,701	-				-0.8
3,201,703	+				+0.2
3,201,729	+				-0.5
3,201,730	-				-0.4
3,201,730	-				-0.2
3,201,730	-				+0.8
3,201,787	-				+1.9
3,201,787	-				-0.7
3,201,809	+				-0.0
3,201,912	+		DZA65_RS14720	0.15	+0.9
3,201,912	+		DZA65_RS14720	0.15	-0.4
3,201,912	+		DZA65_RS14720	0.15	+0.7
3,201,919	+		DZA65_RS14720	0.16	+1.3
3,201,920	-		DZA65_RS14720	0.16	+0.8
3,201,920	-		DZA65_RS14720	0.16	+0.3
3,201,982	+		DZA65_RS14720	0.21	+0.7
3,201,994	+		DZA65_RS14720	0.22	+0.2
3,202,045	+		DZA65_RS14720	0.27	-1.2
3,202,046	-		DZA65_RS14720	0.27	+1.0
3,202,046	-		DZA65_RS14720	0.27	-0.1
3,202,046	-		DZA65_RS14720	0.27	+0.3
3,202,086	+		DZA65_RS14720	0.30	+0.3
3,202,086	+		DZA65_RS14720	0.30	-0.1
3,202,086	+		DZA65_RS14720	0.30	-2.5
3,202,086	+		DZA65_RS14720	0.30	-1.5
3,202,090	+				+1.3
3,202,090	+		DZA65_RS14720	0.31	+0.7
3,202,090	+		DZA65_RS14720	0.31	+1.6
3,202,090	+		DZA65_RS14720	0.31	-0.2
3,202,090	+		DZA65_RS14720	0.31	+0.8
3,202,090	+		DZA65_RS14720	0.31	-0.2
3,202,091	-		DZA65_RS14720	0.31	+0.1
3,202,091	-		DZA65_RS14720	0.31	+0.8
3,202,091	-		DZA65_RS14720	0.31	+1.3
3,202,114	+		DZA65_RS14720	0.33	-0.2
3,202,114	+		DZA65_RS14720	0.33	-0.4
3,202,114	+		DZA65_RS14720	0.33	+0.2
3,202,114	+		DZA65_RS14720	0.33	+0.8
3,202,114	+		DZA65_RS14720	0.33	-1.2
3,202,114	+		DZA65_RS14720	0.33	-0.5
3,202,114	+		DZA65_RS14720	0.33	-1.0
3,202,114	+		DZA65_RS14720	0.33	-0.7
3,202,114	+		DZA65_RS14720	0.33	+0.0
3,202,115	-		DZA65_RS14720	0.33	+1.1
3,202,115	-		DZA65_RS14720	0.33	-0.2
3,202,115	-		DZA65_RS14720	0.33	+2.7
3,202,115	-		DZA65_RS14720	0.33	+1.0
3,202,115	-		DZA65_RS14720	0.33	+0.5
3,202,115	-		DZA65_RS14720	0.33	-0.0
3,202,115	-		DZA65_RS14720	0.33	-0.7
3,202,115	-		DZA65_RS14720	0.33	-0.2
3,202,115	-		DZA65_RS14720	0.33	+1.3
3,202,115	-		DZA65_RS14720	0.33	+0.3
3,202,115	-		DZA65_RS14720	0.33	-0.3
3,202,115	-		DZA65_RS14720	0.33	+1.3
3,202,115	-		DZA65_RS14720	0.33	+2.2
3,202,115	-		DZA65_RS14720	0.33	-1.7
3,202,115	-		DZA65_RS14720	0.33	+0.2
3,202,115	-		DZA65_RS14720	0.33	-0.4
3,202,157	+		DZA65_RS14720	0.36	+1.2
3,202,158	-		DZA65_RS14720	0.36	+0.6
3,202,233	+		DZA65_RS14720	0.43	-0.2
3,202,233	+		DZA65_RS14720	0.43	-0.2
3,202,234	-		DZA65_RS14720	0.43	+0.7
3,202,234	-		DZA65_RS14720	0.43	+0.7
3,202,234	-		DZA65_RS14720	0.43	-1.0
3,202,234	-		DZA65_RS14720	0.43	+0.1
3,202,345	+		DZA65_RS14720	0.52	+1.5
3,202,346	-		DZA65_RS14720	0.52	+0.2
3,202,524	+		DZA65_RS14720	0.68	-0.8
3,202,524	+		DZA65_RS14720	0.68	-0.7
3,202,524	+		DZA65_RS14720	0.68	-0.8
3,202,524	+		DZA65_RS14720	0.68	+0.0
3,202,524	+		DZA65_RS14720	0.68	-0.3
3,202,525	-		DZA65_RS14720	0.68	+0.8
3,202,525	-		DZA65_RS14720	0.68	-0.2
3,202,525	-		DZA65_RS14720	0.68	+0.8
3,202,555	+		DZA65_RS14720	0.70	+0.3
3,202,555	+		DZA65_RS14720	0.70	+0.2
3,202,555	+		DZA65_RS14720	0.70	-1.7
3,202,555	+		DZA65_RS14720	0.70	-0.3
3,202,555	+		DZA65_RS14720	0.70	+0.2
3,202,556	-		DZA65_RS14720	0.70	+0.9
3,202,570	+		DZA65_RS14720	0.71	+0.3
3,202,570	+		DZA65_RS14720	0.71	+1.7
3,202,570	+		DZA65_RS14720	0.71	-0.2
3,202,570	+		DZA65_RS14720	0.71	-0.0
3,202,570	+		DZA65_RS14720	0.71	-0.2
3,202,570	+		DZA65_RS14720	0.71	-0.4
3,202,570	+		DZA65_RS14720	0.71	-0.4
3,202,571	-		DZA65_RS14720	0.72	-0.3
3,202,571	-		DZA65_RS14720	0.72	+1.2
3,202,571	-		DZA65_RS14720	0.72	-0.4
3,202,571	-		DZA65_RS14720	0.72	-0.1
3,202,571	-		DZA65_RS14720	0.72	+1.6
3,202,571	-		DZA65_RS14720	0.72	+0.3
3,202,571	-		DZA65_RS14720	0.72	-1.4
3,202,591	+		DZA65_RS14720	0.73	+0.3
3,202,591	+		DZA65_RS14720	0.73	-0.5
3,202,591	+		DZA65_RS14720	0.73	-1.2
3,202,591	+		DZA65_RS14720	0.73	+1.0
3,202,592	-		DZA65_RS14720	0.73	-0.1
3,202,592	-		DZA65_RS14720	0.73	-2.2
3,202,592	-		DZA65_RS14720	0.73	-1.0
3,202,592	-		DZA65_RS14720	0.73	+0.3
3,202,592	-		DZA65_RS14720	0.73	+0.5
3,202,612	+		DZA65_RS14720	0.75	-0.5
3,202,612	+		DZA65_RS14720	0.75	+0.0
3,202,613	-		DZA65_RS14720	0.75	-1.2
3,202,613	-		DZA65_RS14720	0.75	-0.5
3,202,796	-				+0.2
3,202,816	-				-0.1
3,202,924	+				-0.9
3,202,924	+				+0.9
3,202,924	+				-2.6
3,202,925	-				-0.7
3,202,937	+				-1.0
3,202,937	+				+0.5
3,202,938	-				-2.7
3,202,967	-				+0.8
3,202,979	+				-0.5
3,202,991	+				+0.1
3,202,992	-				-0.2
3,203,033	+				+0.5
3,203,054	+				-0.2
3,203,054	+				-1.5
3,203,060	+				+1.3
3,203,193	+		DZA65_RS14725	0.22	-0.3
3,203,337	+		DZA65_RS14725	0.40	+0.2
3,203,341	+		DZA65_RS14725	0.41	+0.1
3,203,453	-		DZA65_RS14725	0.55	+0.1
3,203,497	+		DZA65_RS14725	0.61	+1.7
3,203,497	+		DZA65_RS14725	0.61	-2.6
3,203,497	+		DZA65_RS14725	0.61	-0.5
3,203,497	+		DZA65_RS14725	0.61	-0.2
3,203,497	+		DZA65_RS14725	0.61	+1.0
3,203,498	-		DZA65_RS14725	0.61	-1.7
3,203,498	-		DZA65_RS14725	0.61	+0.8
3,203,498	-		DZA65_RS14725	0.61	-0.4
3,203,498	-		DZA65_RS14725	0.61	-0.1
3,203,498	-		DZA65_RS14725	0.61	+0.2
3,203,518	+		DZA65_RS14725	0.64	+0.0
3,203,519	-		DZA65_RS14725	0.64	-0.9
3,203,519	-		DZA65_RS14725	0.64	-0.8
3,203,519	-		DZA65_RS14725	0.64	+0.6
3,203,551	-		DZA65_RS14725	0.68	+0.9
3,203,767	+				+0.4
3,203,768	-				-0.8
3,203,798	-				-0.8
3,203,808	-				+2.3
3,203,884	-				+0.3
3,203,892	+				-0.1
3,203,892	+				-1.7
3,203,904	+				+0.2
3,203,904	+				-0.1
3,203,904	+				-0.0
3,203,904	+				+3.2
3,203,904	+				+0.0
3,203,904	+				+0.7
3,203,905	-				+0.4
3,203,905	-				+0.5
3,203,905	-				-0.4