Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14700

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,195,368	-				+2.7
3,195,396	+		DZA65_RS14695	0.41	-0.1
3,195,396	+		DZA65_RS14695	0.41	-1.8
3,195,397	-		DZA65_RS14695	0.41	+0.3
3,195,400	-		DZA65_RS14695	0.41	-0.1
3,195,400	-		DZA65_RS14695	0.41	-0.2
3,195,730	+		DZA65_RS14695	0.67	+0.3
3,195,730	+		DZA65_RS14695	0.67	+0.6
3,195,775	-		DZA65_RS14695	0.71	+0.0
3,195,775	-		DZA65_RS14695	0.71	-0.7
3,195,777	+		DZA65_RS14695	0.71	-0.2
3,195,777	+		DZA65_RS14695	0.71	+0.3
3,195,777	+		DZA65_RS14695	0.71	+0.2
3,195,777	+		DZA65_RS14695	0.71	-0.7
3,195,777	+		DZA65_RS14695	0.71	-1.7
3,195,777	+		DZA65_RS14695	0.71	+1.3
3,195,778	-		DZA65_RS14695	0.71	+0.3
3,195,778	-		DZA65_RS14695	0.71	+0.3
3,195,778	-		DZA65_RS14695	0.71	+0.8
3,195,778	-		DZA65_RS14695	0.71	-0.7
3,195,778	-		DZA65_RS14695	0.71	-0.2
3,195,790	+		DZA65_RS14695	0.72	-0.1
3,195,790	+		DZA65_RS14695	0.72	-0.2
3,195,790	+		DZA65_RS14695	0.72	+0.3
3,195,790	+		DZA65_RS14695	0.72	-0.1
3,195,791	-		DZA65_RS14695	0.72	-0.2
3,195,791	-		DZA65_RS14695	0.72	+0.8
3,195,791	-		DZA65_RS14695	0.72	-0.3
3,195,975	+		DZA65_RS14695	0.86	-0.1
3,195,975	+		DZA65_RS14695	0.86	+0.3
3,195,975	+		DZA65_RS14695	0.86	-0.5
3,195,976	-		DZA65_RS14695	0.86	-1.5
3,195,976	-		DZA65_RS14695	0.86	-0.7
3,195,976	-		DZA65_RS14695	0.86	+0.3
3,195,976	-		DZA65_RS14695	0.86	+1.3
3,195,976	-		DZA65_RS14695	0.86	+0.9
3,196,133	+				+0.8
3,196,133	+				+0.0
3,196,134	-				-0.2
3,196,134	-				+0.2
3,196,134	-				+0.2
3,196,134	-				-0.2
3,196,290	+				+1.2
3,196,290	+				+1.3
3,196,291	-				-1.2
3,196,292	+				+0.6
3,196,292	+				-1.1
3,196,292	+				-0.6
3,196,326	+				-0.2
3,196,335	+				-1.0
3,196,336	-				+0.3
3,196,336	-				+2.1
3,196,354	+				+0.6
3,196,354	+				-1.8
3,196,355	-				-1.5
3,196,355	-				+0.6
3,196,355	-				-1.1
3,196,456	+				-0.2
3,196,456	+				-0.1
3,196,525	+				+0.3
3,196,526	-				+2.2
3,196,582	+		DZA65_RS14700	0.13	-1.2
3,196,633	+		DZA65_RS14700	0.16	-0.7
3,196,633	+		DZA65_RS14700	0.16	-1.2
3,196,633	+		DZA65_RS14700	0.16	-0.7
3,196,633	+		DZA65_RS14700	0.16	-1.0
3,196,633	+		DZA65_RS14700	0.16	+1.7
3,196,634	-		DZA65_RS14700	0.16	-1.2
3,196,634	-		DZA65_RS14700	0.16	-1.7
3,196,634	-		DZA65_RS14700	0.16	-0.4
3,196,681	+		DZA65_RS14700	0.18	-0.1
3,196,681	+		DZA65_RS14700	0.18	-0.1
3,196,681	+		DZA65_RS14700	0.18	+0.7
3,196,681	+		DZA65_RS14700	0.18	-0.9
3,196,681	+		DZA65_RS14700	0.18	+0.3
3,196,681	+		DZA65_RS14700	0.18	-1.1
3,196,681	+		DZA65_RS14700	0.18	+0.8
3,196,681	+		DZA65_RS14700	0.18	-0.1
3,196,682	-		DZA65_RS14700	0.19	+0.7
3,196,682	-		DZA65_RS14700	0.19	-2.5
3,196,682	-		DZA65_RS14700	0.19	-2.0
3,196,682	-		DZA65_RS14700	0.19	-3.1
3,196,682	-		DZA65_RS14700	0.19	-0.5
3,196,682	-		DZA65_RS14700	0.19	+0.1
3,196,685	+		DZA65_RS14700	0.19	+1.5
3,196,685	+		DZA65_RS14700	0.19	+0.3
3,196,685	+		DZA65_RS14700	0.19	-0.2
3,196,685	+		DZA65_RS14700	0.19	-0.1
3,196,685	+		DZA65_RS14700	0.19	+0.9
3,196,685	+		DZA65_RS14700	0.19	+0.3
3,196,686	-		DZA65_RS14700	0.19	+0.9
3,196,686	-		DZA65_RS14700	0.19	-0.5
3,196,686	-		DZA65_RS14700	0.19	+0.2
3,196,686	-		DZA65_RS14700	0.19	-1.7
3,196,686	-		DZA65_RS14700	0.19	+0.1
3,196,703	-		DZA65_RS14700	0.20	-0.7
3,196,708	+		DZA65_RS14700	0.20	+0.8
3,196,708	+		DZA65_RS14700	0.20	+0.1
3,196,709	-		DZA65_RS14700	0.20	-1.1
3,196,727	+		DZA65_RS14700	0.21	+0.3
3,196,727	+		DZA65_RS14700	0.21	+0.2
3,196,727	+		DZA65_RS14700	0.21	-0.4
3,196,728	-		DZA65_RS14700	0.21	-2.2
3,196,728	-		DZA65_RS14700	0.21	+1.0
3,196,728	-		DZA65_RS14700	0.21	+2.7
3,196,728	-		DZA65_RS14700	0.21	+1.3
3,196,734	-		DZA65_RS14700	0.21	+0.3
3,196,734	-		DZA65_RS14700	0.21	+0.8
3,196,734	-		DZA65_RS14700	0.21	-1.0
3,196,734	-		DZA65_RS14700	0.21	-0.4
3,196,852	+		DZA65_RS14700	0.28	+1.2
3,196,853	-		DZA65_RS14700	0.28	-2.2
3,196,928	-		DZA65_RS14700	0.32	-0.4
3,197,001	+		DZA65_RS14700	0.37	-1.1
3,197,002	-		DZA65_RS14700	0.37	-0.1
3,197,002	-		DZA65_RS14700	0.37	-0.5
3,197,002	-		DZA65_RS14700	0.37	+2.0
3,197,036	+		DZA65_RS14700	0.39	+0.0
3,197,036	+		DZA65_RS14700	0.39	+0.3
3,197,037	-		DZA65_RS14700	0.39	+0.3
3,197,037	-		DZA65_RS14700	0.39	+1.7
3,197,117	+		DZA65_RS14700	0.43	+0.1
3,197,154	-		DZA65_RS14700	0.45	+1.9
3,197,170	+		DZA65_RS14700	0.46	-0.5
3,197,224	+		DZA65_RS14700	0.49	-0.9
3,197,224	+		DZA65_RS14700	0.49	+0.3
3,197,225	-		DZA65_RS14700	0.49	+1.7
3,197,309	+		DZA65_RS14700	0.54	-0.1
3,197,309	+		DZA65_RS14700	0.54	+0.9
3,197,309	+		DZA65_RS14700	0.54	-0.8
3,197,309	+		DZA65_RS14700	0.54	+0.3
3,197,310	-		DZA65_RS14700	0.54	-1.5
3,197,310	-		DZA65_RS14700	0.54	+1.5
3,197,310	-		DZA65_RS14700	0.54	-0.4
3,197,310	-		DZA65_RS14700	0.54	+0.3
3,197,310	-		DZA65_RS14700	0.54	+1.3
3,197,323	+		DZA65_RS14700	0.55	-1.0
3,197,323	+		DZA65_RS14700	0.55	+0.3
3,197,323	+		DZA65_RS14700	0.55	-0.5
3,197,323	+		DZA65_RS14700	0.55	-0.1
3,197,323	+		DZA65_RS14700	0.55	+0.2
3,197,323	+		DZA65_RS14700	0.55	-0.0
3,197,323	+		DZA65_RS14700	0.55	+1.0
3,197,323	+		DZA65_RS14700	0.55	+0.5
3,197,324	-		DZA65_RS14700	0.55	-0.5
3,197,324	-		DZA65_RS14700	0.55	+0.7
3,197,324	-		DZA65_RS14700	0.55	-2.0
3,197,324	-		DZA65_RS14700	0.55	-0.2
3,197,324	-		DZA65_RS14700	0.55	-1.2
3,197,324	-		DZA65_RS14700	0.55	-0.1
3,197,324	-		DZA65_RS14700	0.55	+1.2
3,197,324	-		DZA65_RS14700	0.55	+0.7
3,197,324	-		DZA65_RS14700	0.55	-0.2
3,197,324	-		DZA65_RS14700	0.55	-0.5
3,197,324	-				+0.6
3,197,327	+		DZA65_RS14700	0.55	-0.5
3,197,327	+		DZA65_RS14700	0.55	+0.9
3,197,327	+		DZA65_RS14700	0.55	+0.9
3,197,328	-		DZA65_RS14700	0.55	+0.2
3,197,328	-		DZA65_RS14700	0.55	-0.3
3,197,384	+		DZA65_RS14700	0.58	+0.2
3,197,384	+		DZA65_RS14700	0.58	-1.2
3,197,385	-		DZA65_RS14700	0.58	-0.8
3,197,385	-		DZA65_RS14700	0.58	-1.0
3,197,486	+		DZA65_RS14700	0.64	+0.9
3,197,486	+		DZA65_RS14700	0.64	-0.8
3,197,486	+		DZA65_RS14700	0.64	+0.0
3,197,486	+		DZA65_RS14700	0.64	+1.0
3,197,486	+		DZA65_RS14700	0.64	+0.6
3,197,486	+		DZA65_RS14700	0.64	-0.7
3,197,487	-		DZA65_RS14700	0.64	+0.3
3,197,491	+		DZA65_RS14700	0.64	-0.8
3,197,492	-		DZA65_RS14700	0.64	+0.1
3,197,492	-		DZA65_RS14700	0.64	+1.5
3,197,528	+		DZA65_RS14700	0.66	+0.7
3,197,528	+		DZA65_RS14700	0.66	+0.7
3,197,528	+		DZA65_RS14700	0.66	-1.5
3,197,528	+		DZA65_RS14700	0.66	+0.5
3,197,528	+		DZA65_RS14700	0.66	-0.5
3,197,529	-		DZA65_RS14700	0.67	+1.6
3,197,529	-		DZA65_RS14700	0.67	-0.3
3,197,529	-		DZA65_RS14700	0.67	-0.2
3,197,529	-		DZA65_RS14700	0.67	-0.7
3,197,562	+		DZA65_RS14700	0.68	-0.4
3,197,637	-		DZA65_RS14700	0.73	-0.7
3,197,798	-		DZA65_RS14700	0.82	+0.1
3,197,798	-		DZA65_RS14700	0.82	-0.2
3,197,876	+		DZA65_RS14700	0.86	-0.2
3,197,876	+		DZA65_RS14700	0.86	-0.7
3,197,876	+		DZA65_RS14700	0.86	+0.8
3,197,876	+		DZA65_RS14700	0.86	+0.2
3,197,876	+		DZA65_RS14700	0.86	-0.1
3,197,876	+		DZA65_RS14700	0.86	+0.6
3,197,876	+		DZA65_RS14700	0.86	-0.4
3,197,876	+		DZA65_RS14700	0.86	+3.2
3,197,876	+		DZA65_RS14700	0.86	-0.7
3,197,876	+		DZA65_RS14700	0.86	+2.2
3,197,876	+		DZA65_RS14700	0.86	+0.8
3,197,877	-		DZA65_RS14700	0.86	+0.3
3,197,877	-				-0.7
3,197,877	-		DZA65_RS14700	0.86	+0.8
3,197,877	-		DZA65_RS14700	0.86	+0.1
3,197,877	-		DZA65_RS14700	0.86	+0.8
3,197,879	+		DZA65_RS14700	0.86	-0.2
3,197,879	+		DZA65_RS14700	0.86	+0.8
3,197,879	+		DZA65_RS14700	0.86	-2.2
3,197,879	+		DZA65_RS14700	0.86	+0.2
3,197,880	-		DZA65_RS14700	0.86	-0.7
3,197,880	-		DZA65_RS14700	0.86	+0.8
3,197,933	+		DZA65_RS14700	0.89	+0.7
3,197,935	+		DZA65_RS14700	0.90	-0.9
3,197,935	+		DZA65_RS14700	0.90	+0.2
3,197,935	+		DZA65_RS14700	0.90	+1.0
3,197,935	+		DZA65_RS14700	0.90	-0.2
3,197,936	-		DZA65_RS14700	0.90	-0.1
3,197,936	-		DZA65_RS14700	0.90	-0.7
3,197,936	-		DZA65_RS14700	0.90	-1.0
3,197,936	-		DZA65_RS14700	0.90	-0.9
3,197,936	-		DZA65_RS14700	0.90	+1.3
3,198,063	-				+0.8
3,198,063	-				+0.8
3,198,069	-				-0.5
3,198,114	-				-0.7
3,198,228	+				+1.4
3,198,393	+		DZA65_RS14705	0.18	-0.3
3,198,393	+		DZA65_RS14705	0.18	-1.2
3,198,393	+		DZA65_RS14705	0.18	-0.7
3,198,393	+		DZA65_RS14705	0.18	-0.7
3,198,393	+		DZA65_RS14705	0.18	-1.5
3,198,394	-		DZA65_RS14705	0.18	+1.3
3,198,394	-		DZA65_RS14705	0.18	-0.4
3,198,394	-		DZA65_RS14705	0.18	-0.0
3,198,394	-		DZA65_RS14705	0.18	-0.7
3,198,469	-		DZA65_RS14705	0.22	+0.0
3,198,483	+		DZA65_RS14705	0.23	-0.3
3,198,483	+		DZA65_RS14705	0.23	-1.7
3,198,483	+		DZA65_RS14705	0.23	+0.2
3,198,483	+		DZA65_RS14705	0.23	+0.0
3,198,484	-		DZA65_RS14705	0.23	+0.8
3,198,625	-		DZA65_RS14705	0.32	-2.1
3,198,645	+		DZA65_RS14705	0.33	+0.3
3,198,654	+		DZA65_RS14705	0.34	+0.7
3,198,654	+		DZA65_RS14705	0.34	+0.0
3,198,655	-		DZA65_RS14705	0.34	+0.7
3,198,655	-		DZA65_RS14705	0.34	+1.8
3,198,655	-		DZA65_RS14705	0.34	-1.7
3,198,926	-		DZA65_RS14705	0.51	-1.2
3,198,926	-		DZA65_RS14705	0.51	+0.6
3,198,926	-		DZA65_RS14705	0.51	-0.1
3,199,014	+		DZA65_RS14705	0.56	+1.0
3,199,014	+		DZA65_RS14705	0.56	-0.8
3,199,014	+		DZA65_RS14705	0.56	-0.7
3,199,014	+		DZA65_RS14705	0.56	-1.4
3,199,014	+		DZA65_RS14705	0.56	-2.0
3,199,014	+		DZA65_RS14705	0.56	+1.2
3,199,014	+		DZA65_RS14705	0.56	+0.6
3,199,014	+		DZA65_RS14705	0.56	-0.4
3,199,014	+		DZA65_RS14705	0.56	+0.3
3,199,015	-		DZA65_RS14705	0.56	+0.8
3,199,015	-		DZA65_RS14705	0.56	-0.9
3,199,015	-		DZA65_RS14705	0.56	+0.3
3,199,015	-		DZA65_RS14705	0.56	+0.4
3,199,019	+		DZA65_RS14705	0.57	+1.6
3,199,083	+		DZA65_RS14705	0.61	-0.4
3,199,083	+		DZA65_RS14705	0.61	+0.8
3,199,083	+		DZA65_RS14705	0.61	+0.3
3,199,084	-		DZA65_RS14705	0.61	+1.3
3,199,084	-		DZA65_RS14705	0.61	+0.5
3,199,084	-		DZA65_RS14705	0.61	-1.4
3,199,084	-		DZA65_RS14705	0.61	-0.5
3,199,084	-		DZA65_RS14705	0.61	-1.5
3,199,084	-		DZA65_RS14705	0.61	-1.2
3,199,108	+		DZA65_RS14705	0.62	-0.2
3,199,108	+		DZA65_RS14705	0.62	+0.1
3,199,108	+		DZA65_RS14705	0.62	-1.6