Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14270

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,116,126	+				+0.3
3,116,147	+				-0.2
3,116,148	-				-0.4
3,116,213	+		DZA65_RS14265	0.16	+0.0
3,116,214	-		DZA65_RS14265	0.16	-0.1
3,116,214	-		DZA65_RS14265	0.16	-1.2
3,116,214	-		DZA65_RS14265	0.16	-3.0
3,116,214	-		DZA65_RS14265	0.16	+0.6
3,116,223	+		DZA65_RS14265	0.17	+0.5
3,116,242	+		DZA65_RS14265	0.20	+1.3
3,116,243	-		DZA65_RS14265	0.20	+0.9
3,116,243	-				-1.0
3,116,245	-		DZA65_RS14265	0.20	+0.3
3,116,245	-		DZA65_RS14265	0.20	-1.2
3,116,245	-		DZA65_RS14265	0.20	-0.4
3,116,267	-		DZA65_RS14265	0.23	+1.7
3,116,275	+		DZA65_RS14265	0.24	+1.2
3,116,275	+		DZA65_RS14265	0.24	+0.5
3,116,276	-		DZA65_RS14265	0.24	+0.7
3,116,343	+		DZA65_RS14265	0.33	+0.8
3,116,344	-		DZA65_RS14265	0.33	-1.3
3,116,349	+		DZA65_RS14265	0.34	-0.1
3,116,349	+		DZA65_RS14265	0.34	+0.9
3,116,349	+		DZA65_RS14265	0.34	+1.5
3,116,353	+		DZA65_RS14265	0.34	+1.1
3,116,353	+		DZA65_RS14265	0.34	+0.5
3,116,454	+				+1.3
3,116,454	+		DZA65_RS14265	0.48	-0.3
3,116,455	-		DZA65_RS14265	0.48	-1.0
3,116,473	+		DZA65_RS14265	0.50	-0.7
3,116,474	-		DZA65_RS14265	0.51	+0.9
3,116,474	-		DZA65_RS14265	0.51	-1.7
3,116,474	-		DZA65_RS14265	0.51	-0.7
3,116,474	-		DZA65_RS14265	0.51	+0.3
3,116,474	-		DZA65_RS14265	0.51	-1.9
3,116,474	-		DZA65_RS14265	0.51	-1.2
3,116,474	-		DZA65_RS14265	0.51	-1.7
3,116,476	-		DZA65_RS14265	0.51	-1.0
3,116,494	+		DZA65_RS14265	0.53	+0.2
3,116,495	-		DZA65_RS14265	0.53	+0.6
3,116,526	+		DZA65_RS14265	0.57	-1.0
3,116,526	+		DZA65_RS14265	0.57	+0.5
3,116,527	-		DZA65_RS14265	0.58	-3.0
3,116,527	-		DZA65_RS14265	0.58	-2.8
3,116,527	-		DZA65_RS14265	0.58	-1.5
3,116,532	-		DZA65_RS14265	0.58	-1.1
3,116,532	-		DZA65_RS14265	0.58	-0.3
3,116,583	+		DZA65_RS14265	0.65	-0.2
3,116,583	+		DZA65_RS14265	0.65	-2.2
3,116,583	+		DZA65_RS14265	0.65	-0.5
3,116,583	+		DZA65_RS14265	0.65	+0.3
3,116,583	+		DZA65_RS14265	0.65	-0.2
3,116,583	+		DZA65_RS14265	0.65	-1.8
3,116,583	+		DZA65_RS14265	0.65	+0.1
3,116,583	+		DZA65_RS14265	0.65	+0.6
3,116,583	+		DZA65_RS14265	0.65	+1.8
3,116,584	-		DZA65_RS14265	0.65	+0.5
3,116,584	-		DZA65_RS14265	0.65	+0.3
3,116,588	-		DZA65_RS14265	0.66	-1.4
3,116,633	-		DZA65_RS14265	0.72	-0.7
3,116,710	-		DZA65_RS14265	0.82	-0.8
3,116,710	-		DZA65_RS14265	0.82	-0.4
3,116,710	-		DZA65_RS14265	0.82	-0.8
3,116,758	+		DZA65_RS14265	0.88	+0.0
3,116,758	+		DZA65_RS14265	0.88	+0.2
3,116,759	-		DZA65_RS14265	0.89	-3.0
3,116,775	+				+2.1
3,116,776	-				-0.8
3,116,776	-				-0.8
3,116,776	-				+0.9
3,116,776	-				-0.1
3,116,832	-				-0.2
3,116,832	-				-2.2
3,116,842	+				-0.1
3,116,843	-				-1.2
3,116,847	-				-3.0
3,116,897	+				+0.1
3,116,897	+				-2.2
3,116,898	-				+0.2
3,116,901	+				-2.5
3,116,901	+				-0.5
3,116,902	-				+0.1
3,116,921	+				-3.0
3,116,922	-				-0.8
3,116,940	-				-0.5
3,116,940	-				-0.4
3,116,945	-				+0.0
3,116,945	-				+0.9
3,116,959	-				-2.8
3,116,961	+				-0.7
3,116,962	-				+0.2
3,116,962	-				+0.0
3,116,983	-				+0.6
3,116,994	+				-0.0
3,116,994	+				-1.5
3,117,027	-				+1.5
3,117,093	-				-1.0
3,117,140	+				+1.0
3,117,205	+		DZA65_RS14270	0.15	-0.2
3,117,205	+		DZA65_RS14270	0.15	-1.0
3,117,255	-		DZA65_RS14270	0.23	+0.3
3,117,264	+		DZA65_RS14270	0.24	-2.7
3,117,312	+		DZA65_RS14270	0.32	-0.1
3,117,313	-		DZA65_RS14270	0.33	-1.7
3,117,313	-		DZA65_RS14270	0.33	-1.5
3,117,314	+		DZA65_RS14270	0.33	-3.0
3,117,327	-		DZA65_RS14270	0.35	+0.1
3,117,329	-		DZA65_RS14270	0.35	-1.5
3,117,385	+		DZA65_RS14270	0.44	-1.0
3,117,476	+		DZA65_RS14270	0.59	+0.2
3,117,533	+		DZA65_RS14270	0.69	-0.7
3,117,569	-		DZA65_RS14270	0.75	+0.7
3,117,569	-		DZA65_RS14270	0.75	-0.2
3,117,569	-		DZA65_RS14270	0.75	+0.3
3,117,648	+		DZA65_RS14270	0.88	-1.2
3,117,649	-		DZA65_RS14270	0.88	-1.2
3,117,686	+				+0.3
3,117,864	+				-0.7
3,117,921	-				-0.5
3,117,924	-				-2.0
3,117,963	-				-1.2
3,117,978	-				-0.1
3,118,013	+				-0.7
3,118,071	+				+0.8
3,118,071	+				+0.3
3,118,072	-				+0.6
3,118,072	-				-1.2
3,118,072	-				+0.3
3,118,073	+				-1.2
3,118,073	+				+0.7
3,118,079	+				+0.6
3,118,079	+				-0.2
3,118,080	-				-0.9
3,118,080	-				-1.0
3,118,111	+				+0.0
3,118,153	+				+0.0
3,118,153	+				+0.1
3,118,153	+				-0.5
3,118,153	+				-0.5
3,118,153	+				+0.7
3,118,153	+				-2.0
3,118,153	+				-0.0
3,118,153	+				-0.7
3,118,153	+				-1.7
3,118,153	+				-0.1
3,118,153	+				-0.1
3,118,153	+				-0.7
3,118,153	+				-1.0
3,118,153	+				-0.5
3,118,154	-				+0.1
3,118,154	-				-1.2
3,118,154	-				-0.2
3,118,154	-				-0.3
3,118,154	-				-0.8
3,118,154	-				-0.7
3,118,154	-				-2.0
3,118,154	-				+3.5
3,118,207	-				+0.1
3,118,225	+				-0.3
3,118,225	+				+0.9
3,118,226	-				+0.1
3,118,226	-				+0.3
3,118,226	-				-0.7
3,118,226	-				-0.8
3,118,243	-				-0.5
3,118,312	+				-2.0
3,118,400	+				+0.3
3,118,401	-				-0.1
3,118,401	-				-1.2
3,118,441	-				+0.6
3,118,441	-				+0.2
3,118,491	+				-0.9
3,118,491	+				+0.3
3,118,491	+				+0.9
3,118,491	+				+0.9
3,118,491	+				+0.3
3,118,492	-				+0.6
3,118,492	-				-0.3
3,118,495	+				+0.6
3,118,495	+				+0.8
3,118,515	+				-0.3