Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14235

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,097,526	+		DZA65_RS14230	0.87	+1.6
3,097,636	-		DZA65_RS14230	0.89	-1.5
3,097,647	+		DZA65_RS14230	0.89	-0.9
3,097,647	+		DZA65_RS14230	0.89	+0.6
3,097,650	+		DZA65_RS14230	0.89	-0.8
3,097,650	+		DZA65_RS14230	0.89	+0.2
3,097,651	-		DZA65_RS14230	0.89	-0.0
3,097,651	-		DZA65_RS14230	0.89	+0.3
3,097,662	-		DZA65_RS14230	0.89	+0.3
3,097,662	-		DZA65_RS14230	0.89	+2.7
3,097,662	-		DZA65_RS14230	0.89	-0.2
3,097,665	+		DZA65_RS14230	0.89	-0.7
3,097,665	+		DZA65_RS14230	0.89	-0.4
3,097,666	-		DZA65_RS14230	0.89	-0.7
3,097,666	-		DZA65_RS14230	0.89	-1.4
3,097,674	+		DZA65_RS14230	0.89	-1.8
3,097,674	+		DZA65_RS14230	0.89	-0.2
3,097,674	+		DZA65_RS14230	0.89	-0.1
3,097,674	+		DZA65_RS14230	0.89	+0.9
3,097,701	-		DZA65_RS14230	0.90	-1.4
3,097,743	+				-0.1
3,097,743	+				-0.1
3,097,744	-				+1.9
3,097,760	+				+0.3
3,097,804	+				-0.9
3,097,805	-				+0.8
3,097,805	-				+0.4
3,097,830	+				-1.0
3,097,838	+				-0.5
3,097,839	-				+2.3
3,097,974	+				-1.6
3,097,974	+				-0.1
3,098,038	+				-1.0
3,098,038	+				-1.7
3,098,038	+				-0.9
3,098,038	+				+1.2
3,098,038	+				-1.5
3,098,038	+				+1.2
3,098,038	+				-0.5
3,098,038	+				-0.2
3,098,039	-				+1.3
3,098,039	-				-0.0
3,098,039	-				+0.9
3,098,039	-				-1.0
3,098,039	-				-0.5
3,098,039	-				+0.0
3,098,039	-				-0.1
3,098,039	-				+0.1
3,098,042	+				-1.0
3,098,043	-				+0.4
3,098,043	-				-0.1
3,098,043	-				-0.7
3,098,085	-				+0.6
3,098,085	-				+0.9
3,098,163	+				+0.0
3,098,163	+				-0.7
3,098,164	-				-0.1
3,098,164	-				+1.7
3,098,199	+				-1.2
3,098,199	+				-1.3
3,098,221	+				-3.8
3,098,240	+				-1.2
3,098,240	+				-0.1
3,098,241	-				+0.3
3,098,291	-				+0.1
3,098,304	+				+1.0
3,098,311	+				+0.3
3,098,312	-				+1.6
3,098,326	+				-0.2
3,098,327	-				+0.1
3,098,327	-				+0.0
3,098,367	+				-0.1
3,098,367	+				-1.2
3,098,368	-				+0.3
3,098,368	-				-0.7
3,098,464	+				+0.0
3,098,464	+				-0.4
3,098,465	-				+0.9
3,098,465	-				-0.6
3,098,465	-				-1.7
3,098,504	+				+1.9
3,098,504	+				+1.0
3,098,505	-				-1.2
3,098,505	-				-1.2
3,098,505	-				+0.1
3,098,518	+				+0.0
3,098,518	+				-0.9
3,098,519	-				+0.0
3,098,519	-				-0.7
3,098,519	-				-0.0
3,098,539	+				-1.0
3,098,539	+				-0.2
3,098,594	+				-0.4
3,098,595	-				-2.0
3,098,595	-				-1.1
3,098,597	+				+0.7
3,098,597	+				+0.3
3,098,597	+				+0.9
3,098,598	-				+0.3
3,098,598	-				+1.5
3,098,598	-				+1.5
3,098,598	-				-1.0
3,098,666	-		DZA65_RS14235	0.12	+0.3
3,098,673	-		DZA65_RS14235	0.13	+0.3
3,098,684	+		DZA65_RS14235	0.14	-1.4
3,098,684	+		DZA65_RS14235	0.14	-0.7
3,098,685	-		DZA65_RS14235	0.14	+0.3
3,098,685	-		DZA65_RS14235	0.14	-1.2
3,098,698	+		DZA65_RS14235	0.15	+0.2
3,098,698	+		DZA65_RS14235	0.15	-1.6
3,098,699	-		DZA65_RS14235	0.15	+1.1
3,098,758	+		DZA65_RS14235	0.20	-0.7
3,098,759	-		DZA65_RS14235	0.20	-0.0
3,098,787	+		DZA65_RS14235	0.22	-1.2
3,098,787	+		DZA65_RS14235	0.22	+1.2
3,098,787	+		DZA65_RS14235	0.22	-0.5
3,098,787	+		DZA65_RS14235	0.22	+0.2
3,098,787	+		DZA65_RS14235	0.22	-0.2
3,098,787	+		DZA65_RS14235	0.22	-0.9
3,098,787	+		DZA65_RS14235	0.22	-0.0
3,098,787	+		DZA65_RS14235	0.22	-1.7
3,098,788	-		DZA65_RS14235	0.22	-0.0
3,098,788	-		DZA65_RS14235	0.22	+0.9
3,098,788	-		DZA65_RS14235	0.22	-0.2
3,098,788	-		DZA65_RS14235	0.22	-0.2
3,098,788	-		DZA65_RS14235	0.22	+0.9
3,098,788	-		DZA65_RS14235	0.22	-0.7
3,098,788	-		DZA65_RS14235	0.22	-1.1
3,098,788	-		DZA65_RS14235	0.22	-0.4
3,098,788	-		DZA65_RS14235	0.22	+0.6
3,098,788	-		DZA65_RS14235	0.22	-0.7
3,098,791	+		DZA65_RS14235	0.22	-2.0
3,098,791	+		DZA65_RS14235	0.22	+0.2
3,098,791	+		DZA65_RS14235	0.22	-0.2
3,098,791	+		DZA65_RS14235	0.22	+0.4
3,098,791	+		DZA65_RS14235	0.22	-1.0
3,098,791	+		DZA65_RS14235	0.22	-2.2
3,098,791	+		DZA65_RS14235	0.22	-1.2
3,098,792	-		DZA65_RS14235	0.22	-0.2
3,098,792	-		DZA65_RS14235	0.22	-0.9
3,098,792	-		DZA65_RS14235	0.22	-1.4
3,098,809	-		DZA65_RS14235	0.23	-0.7
3,098,809	-		DZA65_RS14235	0.23	-0.2
3,098,828	+		DZA65_RS14235	0.25	-3.2
3,098,829	-		DZA65_RS14235	0.25	+1.3
3,098,859	+		DZA65_RS14235	0.27	-0.4
3,098,859	+		DZA65_RS14235	0.27	-0.8
3,098,860	-		DZA65_RS14235	0.27	+0.0
3,098,861	+		DZA65_RS14235	0.27	-0.7
3,098,861	+		DZA65_RS14235	0.27	+0.1
3,098,861	+		DZA65_RS14235	0.27	+0.9
3,098,861	+		DZA65_RS14235	0.27	-0.7
3,098,862	-		DZA65_RS14235	0.28	+0.7
3,098,873	+		DZA65_RS14235	0.28	-0.0
3,098,873	+		DZA65_RS14235	0.28	-1.1
3,098,874	-		DZA65_RS14235	0.28	-0.1
3,098,874	-		DZA65_RS14235	0.28	-1.7
3,098,877	+		DZA65_RS14235	0.29	-2.2
3,098,877	+		DZA65_RS14235	0.29	+0.0
3,098,877	+				-0.7
3,098,878	-		DZA65_RS14235	0.29	+0.6
3,098,941	+		DZA65_RS14235	0.34	-1.2
3,098,941	+		DZA65_RS14235	0.34	-1.7
3,098,941	+		DZA65_RS14235	0.34	-0.7
3,098,941	+		DZA65_RS14235	0.34	+2.7
3,098,942	-				-2.0
3,098,942	-		DZA65_RS14235	0.34	-0.2
3,098,976	+		DZA65_RS14235	0.36	-0.8
3,098,977	-		DZA65_RS14235	0.36	-0.4
3,098,983	+		DZA65_RS14235	0.37	-1.2
3,099,047	+		DZA65_RS14235	0.42	+0.1
3,099,076	-		DZA65_RS14235	0.44	+2.2
3,099,088	+		DZA65_RS14235	0.45	+1.2
3,099,088	+		DZA65_RS14235	0.45	-0.2
3,099,088	+		DZA65_RS14235	0.45	+2.2
3,099,088	+		DZA65_RS14235	0.45	+1.6
3,099,088	+		DZA65_RS14235	0.45	-1.7
3,099,088	+		DZA65_RS14235	0.45	+1.2
3,099,088	+		DZA65_RS14235	0.45	-2.0
3,099,089	-		DZA65_RS14235	0.45	+0.8
3,099,089	-		DZA65_RS14235	0.45	+1.6
3,099,089	-		DZA65_RS14235	0.45	-1.1
3,099,089	-		DZA65_RS14235	0.45	-1.0
3,099,089	-		DZA65_RS14235	0.45	-1.2
3,099,089	-		DZA65_RS14235	0.45	-0.4
3,099,089	-		DZA65_RS14235	0.45	-1.8
3,099,089	-		DZA65_RS14235	0.45	-0.1
3,099,090	+		DZA65_RS14235	0.45	+0.3
3,099,090	+		DZA65_RS14235	0.45	+0.5
3,099,090	+		DZA65_RS14235	0.45	-0.2
3,099,090	+		DZA65_RS14235	0.45	+0.3
3,099,090	+		DZA65_RS14235	0.45	+0.6
3,099,091	-		DZA65_RS14235	0.45	+0.2
3,099,091	-		DZA65_RS14235	0.45	-0.5
3,099,091	-		DZA65_RS14235	0.45	+0.2
3,099,092	+		DZA65_RS14235	0.45	-0.3
3,099,092	+		DZA65_RS14235	0.45	+0.8
3,099,092	+		DZA65_RS14235	0.45	+1.6
3,099,092	+				+1.1
3,099,092	+		DZA65_RS14235	0.45	+0.2
3,099,092	+		DZA65_RS14235	0.45	+0.1
3,099,092	+		DZA65_RS14235	0.45	-2.2
3,099,092	+		DZA65_RS14235	0.45	+1.9
3,099,092	+		DZA65_RS14235	0.45	-2.0
3,099,093	-		DZA65_RS14235	0.45	-2.2
3,099,093	-		DZA65_RS14235	0.45	-0.4
3,099,093	-		DZA65_RS14235	0.45	+0.7
3,099,093	-		DZA65_RS14235	0.45	-0.0
3,099,093	-		DZA65_RS14235	0.45	+1.5
3,099,093	-		DZA65_RS14235	0.45	-0.5
3,099,093	-		DZA65_RS14235	0.45	-0.1
3,099,093	-		DZA65_RS14235	0.45	-0.3
3,099,117	+		DZA65_RS14235	0.47	-0.5
3,099,117	+		DZA65_RS14235	0.47	+0.6
3,099,123	+		DZA65_RS14235	0.48	-0.2
3,099,182	+		DZA65_RS14235	0.52	+0.2
3,099,182	+		DZA65_RS14235	0.52	-0.7
3,099,182	+		DZA65_RS14235	0.52	+0.1
3,099,182	+		DZA65_RS14235	0.52	+1.0
3,099,182	+		DZA65_RS14235	0.52	-0.7
3,099,182	+		DZA65_RS14235	0.52	+0.2
3,099,182	+		DZA65_RS14235	0.52	+0.8
3,099,185	+		DZA65_RS14235	0.52	+0.1
3,099,186	-		DZA65_RS14235	0.52	-3.4
3,099,186	-		DZA65_RS14235	0.52	+0.1
3,099,186	-		DZA65_RS14235	0.52	-2.2
3,099,186	-		DZA65_RS14235	0.52	+0.3
3,099,186	-		DZA65_RS14235	0.52	-1.9
3,099,188	+		DZA65_RS14235	0.52	+0.3
3,099,188	+		DZA65_RS14235	0.52	-0.7
3,099,201	+		DZA65_RS14235	0.53	-0.5
3,099,201	+		DZA65_RS14235	0.53	+0.0
3,099,201	+		DZA65_RS14235	0.53	-1.5
3,099,201	+		DZA65_RS14235	0.53	-1.1
3,099,201	+		DZA65_RS14235	0.53	+1.0
3,099,202	-		DZA65_RS14235	0.54	-1.1
3,099,202	-		DZA65_RS14235	0.54	-0.2
3,099,357	-		DZA65_RS14235	0.65	-0.3
3,099,390	+		DZA65_RS14235	0.68	-0.2
3,099,390	+		DZA65_RS14235	0.68	-0.7
3,099,391	-		DZA65_RS14235	0.68	-2.0
3,099,416	+		DZA65_RS14235	0.70	-2.0
3,099,416	+		DZA65_RS14235	0.70	+0.3
3,099,417	-		DZA65_RS14235	0.70	-0.7
3,099,509	+		DZA65_RS14235	0.77	-0.5
3,099,542	+		DZA65_RS14235	0.80	-2.2
3,099,542	+		DZA65_RS14235	0.80	+0.3
3,099,542	+		DZA65_RS14235	0.80	+0.3
3,099,542	+		DZA65_RS14235	0.80	+0.2
3,099,542	+		DZA65_RS14235	0.80	-0.1
3,099,542	+		DZA65_RS14235	0.80	-1.7
3,099,542	+		DZA65_RS14235	0.80	-0.1
3,099,543	-		DZA65_RS14235	0.80	+0.8
3,099,543	-				-1.0
3,099,543	-		DZA65_RS14235	0.80	+1.0
3,099,543	-		DZA65_RS14235	0.80	+0.0
3,099,558	+		DZA65_RS14235	0.81	+0.8
3,099,559	-		DZA65_RS14235	0.81	-0.3
3,099,569	+		DZA65_RS14235	0.82	-2.0
3,099,612	+		DZA65_RS14235	0.85	-0.2
3,099,615	+		DZA65_RS14235	0.85	+0.2
3,099,615	+		DZA65_RS14235	0.85	-0.3
3,099,616	-		DZA65_RS14235	0.85	-0.5
3,099,616	-		DZA65_RS14235	0.85	-0.5
3,099,648	-		DZA65_RS14235	0.88	-1.4
3,099,679	+				-0.2
3,099,680	-				+0.2
3,099,708	-				-1.7
3,099,716	+				-1.7
3,099,762	-				+0.3
3,099,780	+				+0.7
3,099,780	+				+0.5
3,099,780	+				+0.3
3,099,780	+				-1.1
3,099,781	-				-0.2
3,099,781	-				+0.3
3,099,799	+				-0.8
3,099,799	+				+0.8
3,099,799	+				-0.2
3,099,799	+				-0.7
3,099,799	+				-3.6
3,099,799	+				-1.8
3,099,800	-				+0.4
3,099,800	-				-0.3
3,099,800	-				+0.3
3,099,822	+				+0.1
3,099,822	+				+0.3
3,099,823	-				-0.7
3,099,840	+				-0.8
3,099,858	-				+0.2
3,099,937	+				+0.7
3,099,962	+				+0.7
3,099,978	-				+1.5
3,099,999	+				+0.3
3,099,999	+				-0.3
3,100,019	-				+0.2
3,100,037	+				+1.1
3,100,037	+				-0.3
3,100,037	+				-2.5
3,100,038	-				-0.8
3,100,133	+				-0.4
3,100,133	+				+0.3
3,100,133	+				-1.2
3,100,134	-				+0.6
3,100,134	-				-0.2
3,100,134	-				-0.2
3,100,141	+				-0.4
3,100,153	+				+0.9
3,100,153	+				-0.7
3,100,153	+				+0.1
3,100,153	+				+0.3
3,100,153	+				-0.6
3,100,153	+				-0.4
3,100,153	+				-0.1
3,100,154	-				-0.8
3,100,154	-				-2.5
3,100,309	+				-0.9
3,100,309	+				-1.5
3,100,310	-				+0.9
3,100,435	-				+0.7
3,100,478	+				+0.7
3,100,478	+				-0.1
3,100,478	+				+0.8
3,100,478	+				-0.3
3,100,503	+				+0.1
3,100,503	+				+0.1
3,100,503	+				-1.2
3,100,503	+				+0.6
3,100,503	+				-2.0
3,100,504	-				-0.1
3,100,504	-				+0.5
3,100,504	-				-2.2
3,100,504	-				+1.6
3,100,504	-				-2.5
3,100,505	+				+1.1
3,100,505	+				-0.2
3,100,505	+				-0.7
3,100,505	+				-0.2
3,100,505	+				+0.1
3,100,505	+				+0.2
3,100,505	+				+1.2
3,100,505	+				-0.5
3,100,505	+				-0.2
3,100,505	+				-1.7
3,100,505	+				+1.9
3,100,505	+				+0.2
3,100,506	-				-0.2
3,100,506	-				-1.0
3,100,506	-				-0.7
3,100,506	-				+0.3
3,100,506	-				+0.5
3,100,506	-				-0.1
3,100,506	-				-1.1
3,100,506	-				-0.6
3,100,506	-				-0.1
3,100,506	-				-2.0
3,100,506	-				-1.0
3,100,506	-				-0.1
3,100,506	-				-2.5
3,100,506	-				+1.8
3,100,506	-				-1.2
3,100,506	-				-0.2
3,100,515	+				+0.1
3,100,540	-				+0.9
3,100,563	+				-1.7
3,100,563	+				+0.7
3,100,565	+				+0.1
3,100,565	+				+1.3
3,100,565	+				-0.4
3,100,565	+				-0.5
3,100,565	+				+0.3
3,100,565	+				-0.4
3,100,565	+				-0.5
3,100,565	+				+0.1
3,100,566	-				+0.2
3,100,566	-				+0.8
3,100,566	-				-1.2
3,100,566	-				+0.9
3,100,566	-				+0.0
3,100,566	-				-1.2
3,100,599	+				-0.7
3,100,600	-				-0.1
3,100,669	+				+0.5
3,100,670	-				-0.7
3,100,670	-				-0.5
3,100,670	-				-0.5
3,100,749	+				-0.0
3,100,749	+				-0.5
3,100,749	+				-0.2
3,100,750	-				+0.3
3,100,750	-				+0.1
3,100,750	-				+1.9
3,100,750	-				+0.4
3,100,750	-				-0.2
3,100,753	+				+0.0
3,100,753	+				-1.1
3,100,753	+				-1.7