Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14120

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,029,679	-		DZA65_RS14115	0.43	+0.1
3,029,679	-		DZA65_RS14115	0.43	-0.5
3,029,687	+		DZA65_RS14115	0.45	+0.6
3,029,687	+		DZA65_RS14115	0.45	-1.0
3,029,688	-		DZA65_RS14115	0.45	-0.4
3,029,688	-		DZA65_RS14115	0.45	-1.7
3,029,688	-		DZA65_RS14115	0.45	-0.7
3,029,688	-		DZA65_RS14115	0.45	+0.3
3,029,688	-				+2.3
3,029,709	+		DZA65_RS14115	0.51	+0.6
3,029,730	+		DZA65_RS14115	0.56	+0.3
3,029,754	+		DZA65_RS14115	0.62	+1.2
3,029,754	+		DZA65_RS14115	0.62	+0.4
3,029,796	+		DZA65_RS14115	0.74	-0.5
3,029,832	+		DZA65_RS14115	0.83	-0.5
3,029,833	-		DZA65_RS14115	0.83	-0.2
3,029,833	-		DZA65_RS14115	0.83	+0.7
3,029,872	+				+0.1
3,029,877	+				-0.7
3,029,878	-				+0.3
3,029,892	-				+0.1
3,029,923	+				+0.1
3,029,923	+				+0.3
3,029,923	+				+0.3
3,029,924	-				+0.3
3,029,924	-				+0.9
3,029,924	-				-0.2
3,029,927	-				-1.7
3,029,944	-				-0.4
3,029,944	-				-0.7
3,029,967	+				-0.1
3,029,967	+				-0.8
3,029,967	+				+0.6
3,029,968	-				-2.5
3,029,968	-				+0.4
3,030,001	-				-0.3
3,030,001	-				+0.4
3,030,001	-				-0.7
3,030,003	-				+0.3
3,030,003	-				+1.2
3,030,003	-				+0.5
3,030,003	-				+0.6
3,030,003	-				-1.0
3,030,005	-				-0.2
3,030,014	-				+0.5
3,030,014	-				+0.2
3,030,184	-				+1.3
3,030,199	-				+0.9
3,030,207	-				+0.3
3,030,207	-				-0.7
3,030,207	-				-0.1
3,030,326	+				-1.8
3,030,327	-				+0.1
3,030,336	-				-0.2
3,030,337	+				-1.7
3,030,338	-				+0.6
3,030,338	-				-0.2
3,030,338	-				+0.3
3,030,338	-				+0.9
3,030,348	+				-0.7
3,030,349	-				-0.8
3,030,367	-				-2.5
3,030,368	+				+0.8
3,030,369	-				-0.7
3,030,369	-				-0.3
3,030,369	-				-1.0
3,030,371	+				+0.9
3,030,372	-				+0.5
3,030,476	+				-0.2
3,030,477	-				-0.2
3,030,477	-				+0.9
3,030,487	-				-0.7
3,030,491	+				+0.0
3,030,504	-				+0.4
3,030,504	-				+0.6
3,030,506	-				-0.5
3,030,511	-				+2.7
3,030,533	+				-1.5
3,030,582	+				+0.1
3,030,582	+				-0.5
3,030,635	+				+0.3
3,030,635	+				-0.2
3,030,635	+				-0.7
3,030,635	+				-1.2
3,030,636	-				+0.7
3,030,636	-				-0.2
3,030,794	+		DZA65_RS14120	0.12	-0.1
3,030,801	+		DZA65_RS14120	0.13	-0.7
3,030,802	-		DZA65_RS14120	0.13	-0.1
3,030,837	-		DZA65_RS14120	0.16	-1.0
3,030,837	-		DZA65_RS14120	0.16	-0.0
3,030,854	+		DZA65_RS14120	0.17	-0.9
3,030,926	+		DZA65_RS14120	0.23	+0.3
3,030,927	-		DZA65_RS14120	0.23	-0.7
3,031,034	+		DZA65_RS14120	0.31	-0.1
3,031,034	+		DZA65_RS14120	0.31	-2.5
3,031,035	-		DZA65_RS14120	0.31	-0.7
3,031,035	-		DZA65_RS14120	0.31	+0.6
3,031,038	+		DZA65_RS14120	0.31	-0.3
3,031,038	+		DZA65_RS14120	0.31	-0.1
3,031,038	+		DZA65_RS14120	0.31	-0.9
3,031,038	+		DZA65_RS14120	0.31	+0.2
3,031,038	+		DZA65_RS14120	0.31	+0.3
3,031,038	+		DZA65_RS14120	0.31	-1.5
3,031,038	+		DZA65_RS14120	0.31	+0.7
3,031,038	+		DZA65_RS14120	0.31	-1.2
3,031,038	+		DZA65_RS14120	0.31	-0.1
3,031,039	-		DZA65_RS14120	0.31	-1.2
3,031,039	-		DZA65_RS14120	0.31	-0.8
3,031,039	-		DZA65_RS14120	0.31	-0.2
3,031,039	-		DZA65_RS14120	0.31	-0.8
3,031,039	-		DZA65_RS14120	0.31	-1.2
3,031,039	-		DZA65_RS14120	0.31	-1.7
3,031,039	-		DZA65_RS14120	0.31	+0.5
3,031,039	-		DZA65_RS14120	0.31	-0.3
3,031,039	-		DZA65_RS14120	0.31	-0.7
3,031,039	-		DZA65_RS14120	0.31	+0.4
3,031,039	-		DZA65_RS14120	0.31	-0.2
3,031,039	-		DZA65_RS14120	0.31	-1.8
3,031,039	-		DZA65_RS14120	0.31	+0.3
3,031,039	-		DZA65_RS14120	0.31	-0.4
3,031,039	-		DZA65_RS14120	0.31	+1.2
3,031,109	+		DZA65_RS14120	0.37	-0.2
3,031,109	+		DZA65_RS14120	0.37	-1.5
3,031,118	+		DZA65_RS14120	0.38	-2.7
3,031,118	+		DZA65_RS14120	0.38	-2.2
3,031,118	+		DZA65_RS14120	0.38	+0.5
3,031,119	-		DZA65_RS14120	0.38	-1.5
3,031,119	-		DZA65_RS14120	0.38	+0.3
3,031,123	-		DZA65_RS14120	0.38	-0.1
3,031,146	+		DZA65_RS14120	0.40	-2.0
3,031,156	-		DZA65_RS14120	0.41	-0.6
3,031,156	-		DZA65_RS14120	0.41	-0.2
3,031,184	+		DZA65_RS14120	0.43	+0.1
3,031,184	+		DZA65_RS14120	0.43	-0.2
3,031,184	+		DZA65_RS14120	0.43	+1.0
3,031,187	+		DZA65_RS14120	0.43	+1.0
3,031,187	+		DZA65_RS14120	0.43	-0.2
3,031,188	-		DZA65_RS14120	0.43	-0.6
3,031,188	-		DZA65_RS14120	0.43	-0.7
3,031,188	-		DZA65_RS14120	0.43	+0.1
3,031,201	-		DZA65_RS14120	0.44	+0.1
3,031,253	+		DZA65_RS14120	0.48	+0.1
3,031,254	-		DZA65_RS14120	0.48	+0.6
3,031,322	+		DZA65_RS14120	0.54	+0.0
3,031,331	+		DZA65_RS14120	0.54	+1.9
3,031,331	+		DZA65_RS14120	0.54	+0.3
3,031,332	-		DZA65_RS14120	0.54	+0.5
3,031,332	-		DZA65_RS14120	0.54	-0.1
3,031,332	-		DZA65_RS14120	0.54	-0.6
3,031,332	-		DZA65_RS14120	0.54	-0.4
3,031,369	+		DZA65_RS14120	0.57	-0.5
3,031,376	+		DZA65_RS14120	0.58	-0.1
3,031,377	-		DZA65_RS14120	0.58	+0.6
3,031,377	-		DZA65_RS14120	0.58	+0.5
3,031,377	-		DZA65_RS14120	0.58	-1.2
3,031,394	-		DZA65_RS14120	0.59	-0.2
3,031,493	+		DZA65_RS14120	0.67	+0.3
3,031,494	-		DZA65_RS14120	0.67	-2.1
3,031,538	+		DZA65_RS14120	0.70	-1.5
3,031,539	-		DZA65_RS14120	0.70	+1.0
3,031,560	+		DZA65_RS14120	0.72	+0.0
3,031,560	+		DZA65_RS14120	0.72	-0.8
3,031,603	+		DZA65_RS14120	0.75	-1.0
3,031,629	+		DZA65_RS14120	0.78	-0.7
3,031,630	-		DZA65_RS14120	0.78	+0.1
3,031,630	-		DZA65_RS14120	0.78	+1.7
3,031,630	-		DZA65_RS14120	0.78	-0.4
3,031,630	-		DZA65_RS14120	0.78	+0.3
3,031,630	-		DZA65_RS14120	0.78	+0.2
3,031,631	+		DZA65_RS14120	0.78	-0.5
3,031,631	+		DZA65_RS14120	0.78	-2.0
3,031,631	+		DZA65_RS14120	0.78	-0.1
3,031,631	+		DZA65_RS14120	0.78	+0.3
3,031,631	+		DZA65_RS14120	0.78	+0.6
3,031,631	+		DZA65_RS14120	0.78	-1.1
3,031,631	+		DZA65_RS14120	0.78	-1.2
3,031,631	+		DZA65_RS14120	0.78	+0.4
3,031,631	+		DZA65_RS14120	0.78	-0.9
3,031,631	+		DZA65_RS14120	0.78	-0.4
3,031,631	+		DZA65_RS14120	0.78	-1.7
3,031,631	+		DZA65_RS14120	0.78	+0.3
3,031,631	+		DZA65_RS14120	0.78	+0.2
3,031,632	-		DZA65_RS14120	0.78	+0.6
3,031,632	-		DZA65_RS14120	0.78	-0.1
3,031,632	-		DZA65_RS14120	0.78	-0.5
3,031,632	-		DZA65_RS14120	0.78	+0.1
3,031,632	-		DZA65_RS14120	0.78	+0.5
3,031,632	-		DZA65_RS14120	0.78	+1.3
3,031,694	+		DZA65_RS14120	0.83	+1.3
3,031,694	+		DZA65_RS14120	0.83	-0.8
3,031,695	-		DZA65_RS14120	0.83	-1.5
3,031,745	+		DZA65_RS14120	0.87	+0.9
3,031,803	-				-0.2
3,031,828	-				+0.7
3,031,842	+				-1.1
3,031,842	+				+0.3
3,031,842	+				+1.2
3,031,842	+				-0.7
3,031,843	-				-0.7
3,031,843	-				-0.1
3,031,843	-				+0.5
3,031,843	-				+0.9
3,031,857	+				-0.7
3,031,858	-				+0.6
3,031,910	+				-0.7
3,031,910	+				-0.5
3,031,910	+				+0.0
3,031,910	+				-0.1
3,031,914	+				-2.2
3,031,922	+				-1.5
3,031,923	-				-0.2
3,031,969	+				-0.8
3,031,970	-				+1.6
3,031,970	-				+0.3
3,031,970	-				-0.5
3,031,970	-				+1.6
3,031,970	-				-1.0
3,031,987	+				-0.4
3,031,987	+				-0.2
3,031,987	+				+0.2
3,031,987	+				-0.3
3,031,987	+				-0.5
3,031,987	+				+0.2
3,031,988	-				+0.2
3,031,988	-				+1.2
3,031,988	-				+0.2
3,031,988	-				-0.1
3,031,988	-				+0.3
3,032,029	+				-0.1
3,032,030	-				+0.6
3,032,030	-				+0.3
3,032,112	-				+1.8
3,032,112	-				+0.3
3,032,147	+		DZA65_RS14125	0.13	-0.4
3,032,220	-		DZA65_RS14125	0.18	-0.9
3,032,220	-		DZA65_RS14125	0.18	-0.2
3,032,253	-		DZA65_RS14125	0.21	-0.7
3,032,253	-		DZA65_RS14125	0.21	-0.1
3,032,263	+		DZA65_RS14125	0.22	-0.0
3,032,264	-		DZA65_RS14125	0.22	+1.7
3,032,306	+		DZA65_RS14125	0.25	-2.0
3,032,307	-		DZA65_RS14125	0.25	-0.4
3,032,321	-		DZA65_RS14125	0.26	+0.3
3,032,334	+		DZA65_RS14125	0.27	-1.2
3,032,334	+		DZA65_RS14125	0.27	-0.2
3,032,335	-		DZA65_RS14125	0.27	+0.3
3,032,335	-		DZA65_RS14125	0.27	-2.4
3,032,357	+		DZA65_RS14125	0.29	+0.6
3,032,411	+		DZA65_RS14125	0.33	+0.8
3,032,411	+		DZA65_RS14125	0.33	-0.1
3,032,411	+		DZA65_RS14125	0.33	-0.8
3,032,411	+		DZA65_RS14125	0.33	-0.9
3,032,412	-		DZA65_RS14125	0.33	-0.5
3,032,412	-		DZA65_RS14125	0.33	-0.2
3,032,412	-		DZA65_RS14125	0.33	-0.1
3,032,421	-		DZA65_RS14125	0.34	+0.2
3,032,421	-		DZA65_RS14125	0.34	+0.2
3,032,492	+		DZA65_RS14125	0.40	+1.1
3,032,492	+		DZA65_RS14125	0.40	+0.3
3,032,493	-		DZA65_RS14125	0.40	+0.3
3,032,493	-		DZA65_RS14125	0.40	+0.2
3,032,550	+		DZA65_RS14125	0.44	+0.1
3,032,551	-		DZA65_RS14125	0.44	+0.7
3,032,668	+		DZA65_RS14125	0.53	+1.1
3,032,668	+		DZA65_RS14125	0.53	+0.9
3,032,668	+		DZA65_RS14125	0.53	+0.1
3,032,668	+		DZA65_RS14125	0.53	-1.0
3,032,668	+		DZA65_RS14125	0.53	-1.0
3,032,668	+		DZA65_RS14125	0.53	+0.1
3,032,669	-		DZA65_RS14125	0.53	+0.9
3,032,669	-		DZA65_RS14125	0.53	+0.7
3,032,669	-		DZA65_RS14125	0.53	+0.1
3,032,669	-		DZA65_RS14125	0.53	+0.8
3,032,673	-		DZA65_RS14125	0.54	-1.7
3,032,691	-		DZA65_RS14125	0.55	-0.2
3,032,695	-		DZA65_RS14125	0.55	+1.0
3,032,704	+		DZA65_RS14125	0.56	+1.5
3,032,704	+		DZA65_RS14125	0.56	-1.7
3,032,705	-		DZA65_RS14125	0.56	-1.5
3,032,705	-		DZA65_RS14125	0.56	-0.5
3,032,771	+		DZA65_RS14125	0.61	-0.6
3,032,771	+		DZA65_RS14125	0.61	+0.9
3,032,771	+		DZA65_RS14125	0.61	-0.9
3,032,772	-		DZA65_RS14125	0.62	-1.0
3,032,774	+		DZA65_RS14125	0.62	-1.5
3,032,775	-				+0.3
3,032,791	+		DZA65_RS14125	0.63	-1.2
3,032,791	+		DZA65_RS14125	0.63	-1.2
3,032,791	+		DZA65_RS14125	0.63	+0.6
3,032,791	+		DZA65_RS14125	0.63	+0.7
3,032,792	-		DZA65_RS14125	0.63	-1.4
3,032,792	-		DZA65_RS14125	0.63	-0.7
3,032,792	-		DZA65_RS14125	0.63	-0.9
3,032,792	-		DZA65_RS14125	0.63	+0.5
3,032,792	-		DZA65_RS14125	0.63	-0.3
3,032,792	-		DZA65_RS14125	0.63	+2.2
3,032,836	+		DZA65_RS14125	0.67	-0.2