Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13725

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,942,862	+				-1.0
2,942,863	-				-0.3
2,942,881	+				+0.4
2,942,881	+				+0.4
2,942,881	+				-0.0
2,942,881	+				-2.4
2,942,882	-				-0.2
2,942,882	-				+0.0
2,942,985	+				-0.2
2,943,051	+				+0.1
2,943,051	+				-0.8
2,943,052	-				-0.6
2,943,052	-				-1.6
2,943,052	-				+1.5
2,943,053	+				-0.5
2,943,053	+				+0.1
2,943,053	+				+0.7
2,943,053	+				-0.9
2,943,053	+				-0.2
2,943,053	+				-0.2
2,943,054	-				+0.6
2,943,054	-				-0.6
2,943,054	-				-0.3
2,943,054	-				-0.0
2,943,054	-				-2.6
2,943,054	-				+1.0
2,943,059	+				+0.1
2,943,111	+				+1.6
2,943,111	+				-0.0
2,943,111	+				+0.6
2,943,112	-				-0.8
2,943,116	-				+0.6
2,943,129	+				+1.0
2,943,129	+				-0.2
2,943,133	+				-0.6
2,943,133	+				-0.9
2,943,174	+		DZA65_RS13720	0.16	-1.2
2,943,174	+		DZA65_RS13720	0.16	-1.0
2,943,174	+		DZA65_RS13720	0.16	-2.8
2,943,203	+		DZA65_RS13720	0.27	-0.3
2,943,204	-		DZA65_RS13720	0.27	-0.5
2,943,230	+		DZA65_RS13720	0.38	-1.5
2,943,231	-		DZA65_RS13720	0.38	-0.1
2,943,282	+		DZA65_RS13720	0.58	+0.4
2,943,313	+				-1.2
2,943,313	+		DZA65_RS13720	0.70	-0.1
2,943,313	+		DZA65_RS13720	0.70	+0.0
2,943,314	-		DZA65_RS13720	0.71	-1.0
2,943,314	-		DZA65_RS13720	0.71	+0.2
2,943,314	-		DZA65_RS13720	0.71	+0.3
2,943,314	-		DZA65_RS13720	0.71	-0.9
2,943,314	-		DZA65_RS13720	0.71	-2.0
2,943,359	+				+0.4
2,943,380	-				-0.5
2,943,420	+				+0.7
2,943,535	+				-0.2
2,943,556	-				-2.0
2,943,570	+				-1.0
2,943,615	-				+1.3
2,943,664	+				+1.0
2,943,685	-				+0.8
2,943,804	+				-0.0
2,943,805	-				+1.0
2,943,805	-				+1.8
2,943,839	+		DZA65_RS13725	0.13	-0.7
2,943,839	+		DZA65_RS13725	0.13	-0.3
2,943,839	+		DZA65_RS13725	0.13	-1.0
2,943,839	+		DZA65_RS13725	0.13	+0.2
2,943,839	+		DZA65_RS13725	0.13	+0.0
2,943,839	+		DZA65_RS13725	0.13	+0.5
2,943,839	+		DZA65_RS13725	0.13	+0.1
2,943,840	-		DZA65_RS13725	0.13	-0.3
2,943,840	-		DZA65_RS13725	0.13	-0.6
2,943,840	-		DZA65_RS13725	0.13	-0.4
2,943,840	-		DZA65_RS13725	0.13	-0.1
2,943,841	+		DZA65_RS13725	0.14	+0.9
2,943,841	+				-0.0
2,943,842	-		DZA65_RS13725	0.14	+0.2
2,943,842	-		DZA65_RS13725	0.14	+0.1
2,943,884	-		DZA65_RS13725	0.21	+0.0
2,943,886	+		DZA65_RS13725	0.22	-0.6
2,943,887	-		DZA65_RS13725	0.22	+1.1
2,943,917	+		DZA65_RS13725	0.27	-0.6
2,943,935	+		DZA65_RS13725	0.30	-2.0
2,943,936	-		DZA65_RS13725	0.31	-0.5
2,943,936	-		DZA65_RS13725	0.31	+0.4
2,943,936	-		DZA65_RS13725	0.31	-1.6
2,943,968	+		DZA65_RS13725	0.36	-0.5
2,943,968	+		DZA65_RS13725	0.36	+0.7
2,943,969	-		DZA65_RS13725	0.37	+0.8
2,944,009	+		DZA65_RS13725	0.44	-0.8
2,944,010	-		DZA65_RS13725	0.44	-0.1
2,944,026	+		DZA65_RS13725	0.47	-0.8
2,944,026	+		DZA65_RS13725	0.47	-0.6
2,944,026	+		DZA65_RS13725	0.47	-1.4
2,944,027	-		DZA65_RS13725	0.47	-2.0
2,944,027	-		DZA65_RS13725	0.47	-2.2
2,944,027	-		DZA65_RS13725	0.47	-0.1
2,944,027	-		DZA65_RS13725	0.47	+0.3
2,944,027	-		DZA65_RS13725	0.47	-0.1
2,944,027	-		DZA65_RS13725	0.47	+0.7
2,944,027	-		DZA65_RS13725	0.47	+1.2
2,944,047	+		DZA65_RS13725	0.51	+0.1
2,944,047	+		DZA65_RS13725	0.51	+1.4
2,944,048	-		DZA65_RS13725	0.51	-0.3
2,944,048	-		DZA65_RS13725	0.51	-0.2
2,944,057	+		DZA65_RS13725	0.52	-0.4
2,944,057	+		DZA65_RS13725	0.52	-0.1
2,944,057	+		DZA65_RS13725	0.52	+0.9
2,944,057	+		DZA65_RS13725	0.52	+0.1
2,944,067	+		DZA65_RS13725	0.54	-0.0
2,944,204	+		DZA65_RS13725	0.79	+0.6
2,944,204	+		DZA65_RS13725	0.79	+0.2
2,944,204	+		DZA65_RS13725	0.79	-2.4
2,944,257	+		DZA65_RS13725	0.88	-0.0
2,944,258	-		DZA65_RS13725	0.89	-0.6
2,944,258	-		DZA65_RS13725	0.89	-0.0
2,944,258	-		DZA65_RS13725	0.89	-0.6
2,944,258	-		DZA65_RS13725	0.89	-2.1
2,944,290	-				+1.6
2,944,290	-				-1.0
2,944,298	+				-2.2
2,944,299	-				-1.2
2,944,354	+				+0.6
2,944,378	+				-1.5
2,944,378	+				-0.8
2,944,393	+				+2.4
2,944,425	-		DZA65_RS13730	0.13	-2.0
2,944,426	+		DZA65_RS13730	0.13	-1.0
2,944,495	-		DZA65_RS13730	0.25	+0.7
2,944,496	+		DZA65_RS13730	0.25	+0.4
2,944,497	-				-0.0
2,944,497	-		DZA65_RS13730	0.26	-1.1
2,944,497	-		DZA65_RS13730	0.26	+1.0
2,944,497	-		DZA65_RS13730	0.26	+1.2
2,944,497	-		DZA65_RS13730	0.26	+0.1
2,944,497	-		DZA65_RS13730	0.26	-0.6
2,944,502	-		DZA65_RS13730	0.26	-3.0
2,944,502	-		DZA65_RS13730	0.26	-0.8
2,944,528	+		DZA65_RS13730	0.31	+0.6
2,944,579	+		DZA65_RS13730	0.40	-0.4
2,944,579	+		DZA65_RS13730	0.40	-0.3
2,944,615	+		DZA65_RS13730	0.46	+0.4
2,944,615	+		DZA65_RS13730	0.46	+2.0
2,944,744	+		DZA65_RS13730	0.68	-0.3
2,944,744	+		DZA65_RS13730	0.68	+0.6
2,944,744	+		DZA65_RS13730	0.68	-2.6
2,944,745	-		DZA65_RS13730	0.68	-2.2
2,944,745	-		DZA65_RS13730	0.68	+0.1
2,944,745	-		DZA65_RS13730	0.68	-2.2
2,944,745	-		DZA65_RS13730	0.68	+0.5
2,944,849	+		DZA65_RS13730	0.86	-0.2
2,944,853	-		DZA65_RS13730	0.87	-0.8
2,944,853	-		DZA65_RS13730	0.87	-1.0
2,944,855	+		DZA65_RS13730	0.87	-0.1
2,944,855	+		DZA65_RS13730	0.87	+0.4
2,944,887	+				-0.7
2,944,898	-				-0.5
2,944,898	-				-2.0
2,944,926	-				-0.9
2,944,949	+				+0.6
2,944,950	-				-0.4
2,944,977	+				-0.6
2,944,978	-				+0.8
2,945,030	-				-0.7
2,945,036	-				+0.2
2,945,036	-				-0.6
2,945,036	-				-0.6
2,945,036	-				+1.4
2,945,126	-		DZA65_RS13735	0.14	+2.2
2,945,174	+		DZA65_RS13735	0.19	+1.1
2,945,174	+				-1.2
2,945,174	+		DZA65_RS13735	0.19	+1.7
2,945,174	+		DZA65_RS13735	0.19	+0.0
2,945,175	-		DZA65_RS13735	0.19	-0.3
2,945,175	-		DZA65_RS13735	0.19	-0.9
2,945,175	-		DZA65_RS13735	0.19	+0.2
2,945,175	-		DZA65_RS13735	0.19	-2.4
2,945,175	-		DZA65_RS13735	0.19	+0.4
2,945,175	-		DZA65_RS13735	0.19	-1.8
2,945,175	-		DZA65_RS13735	0.19	+0.8
2,945,194	+		DZA65_RS13735	0.21	+1.4
2,945,194	+		DZA65_RS13735	0.21	+0.4
2,945,195	-		DZA65_RS13735	0.21	-0.6
2,945,195	-		DZA65_RS13735	0.21	-0.6
2,945,195	-		DZA65_RS13735	0.21	+0.4
2,945,258	+		DZA65_RS13735	0.27	-0.4
2,945,258	+		DZA65_RS13735	0.27	-1.1
2,945,259	-		DZA65_RS13735	0.27	-0.6