Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13310

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,848,309	+		DZA65_RS13305	0.43	-0.3
2,848,310	-		DZA65_RS13305	0.43	+0.3
2,848,329	-		DZA65_RS13305	0.44	-2.0
2,848,366	+		DZA65_RS13305	0.47	-0.0
2,848,366	+		DZA65_RS13305	0.47	+0.1
2,848,366	+		DZA65_RS13305	0.47	+0.7
2,848,367	-		DZA65_RS13305	0.47	+2.2
2,848,400	+		DZA65_RS13305	0.49	-0.2
2,848,400	+		DZA65_RS13305	0.49	+1.0
2,848,402	+		DZA65_RS13305	0.49	-1.0
2,848,402	+		DZA65_RS13305	0.49	+0.9
2,848,402	+		DZA65_RS13305	0.49	+0.9
2,848,403	-		DZA65_RS13305	0.49	+1.6
2,848,403	-		DZA65_RS13305	0.49	-0.8
2,848,411	+		DZA65_RS13305	0.50	+0.5
2,848,411	+		DZA65_RS13305	0.50	+1.3
2,848,411	+		DZA65_RS13305	0.50	-0.9
2,848,411	+		DZA65_RS13305	0.50	-2.5
2,848,411	+		DZA65_RS13305	0.50	-0.7
2,848,412	-		DZA65_RS13305	0.50	-0.1
2,848,412	-		DZA65_RS13305	0.50	-1.8
2,848,412	-		DZA65_RS13305	0.50	+2.3
2,848,412	-		DZA65_RS13305	0.50	+0.2
2,848,412	-		DZA65_RS13305	0.50	-0.0
2,848,412	-		DZA65_RS13305	0.50	-0.8
2,848,412	-		DZA65_RS13305	0.50	+0.6
2,848,412	-		DZA65_RS13305	0.50	+1.4
2,848,412	-		DZA65_RS13305	0.50	-0.6
2,848,480	+		DZA65_RS13305	0.54	+0.6
2,848,481	-		DZA65_RS13305	0.55	-1.0
2,848,522	+		DZA65_RS13305	0.57	+0.3
2,848,523	-		DZA65_RS13305	0.57	-1.9
2,848,523	-		DZA65_RS13305	0.57	-0.2
2,848,603	+		DZA65_RS13305	0.63	+1.4
2,848,603	+		DZA65_RS13305	0.63	+0.0
2,848,604	-		DZA65_RS13305	0.63	+0.8
2,848,718	+		DZA65_RS13305	0.70	+0.6
2,848,718	+		DZA65_RS13305	0.70	-1.1
2,848,782	+		DZA65_RS13305	0.75	+0.3
2,848,782	+		DZA65_RS13305	0.75	+0.5
2,848,783	-		DZA65_RS13305	0.75	-0.5
2,848,798	+		DZA65_RS13305	0.76	-0.5
2,848,798	+		DZA65_RS13305	0.76	-0.4
2,848,799	-		DZA65_RS13305	0.76	-0.5
2,848,799	-		DZA65_RS13305	0.76	-0.1
2,848,799	-		DZA65_RS13305	0.76	-0.2
2,848,803	-		DZA65_RS13305	0.76	-0.1
2,848,891	+		DZA65_RS13305	0.82	+0.6
2,848,892	-		DZA65_RS13305	0.82	-0.5
2,848,892	-		DZA65_RS13305	0.82	-1.7
2,848,894	+		DZA65_RS13305	0.82	-0.2
2,848,894	+		DZA65_RS13305	0.82	+0.9
2,848,894	+		DZA65_RS13305	0.82	-0.4
2,848,894	+		DZA65_RS13305	0.82	-1.3
2,848,894	+		DZA65_RS13305	0.82	+1.6
2,848,894	+		DZA65_RS13305	0.82	-0.9
2,848,894	+		DZA65_RS13305	0.82	-0.7
2,848,894	+		DZA65_RS13305	0.82	-2.5
2,848,894	+		DZA65_RS13305	0.82	-0.3
2,848,894	+		DZA65_RS13305	0.82	-0.4
2,848,895	-		DZA65_RS13305	0.82	-0.2
2,848,895	-		DZA65_RS13305	0.82	-0.2
2,848,895	-		DZA65_RS13305	0.82	-0.9
2,848,895	-		DZA65_RS13305	0.82	-0.7
2,848,895	-		DZA65_RS13305	0.82	-1.4
2,848,895	-		DZA65_RS13305	0.82	+1.6
2,848,895	-		DZA65_RS13305	0.82	-2.0
2,848,895	-		DZA65_RS13305	0.82	-0.0
2,848,895	-		DZA65_RS13305	0.82	-0.5
2,848,900	+		DZA65_RS13305	0.82	+0.3
2,848,909	+		DZA65_RS13305	0.83	+0.5
2,848,909	+		DZA65_RS13305	0.83	-0.2
2,848,909	+		DZA65_RS13305	0.83	+0.3
2,848,910	-		DZA65_RS13305	0.83	+1.0
2,848,910	-		DZA65_RS13305	0.83	-0.3
2,848,910	-		DZA65_RS13305	0.83	+0.6
2,848,924	+		DZA65_RS13305	0.84	+0.8
2,848,925	-		DZA65_RS13305	0.84	+1.3
2,848,925	-		DZA65_RS13305	0.84	+0.9
2,848,980	-		DZA65_RS13305	0.88	-0.0
2,849,062	-				+0.3
2,849,099	+				+1.8
2,849,099	+				-0.4
2,849,099	+				-0.9
2,849,099	+				-0.4
2,849,099	+				-0.3
2,849,099	+				-0.4
2,849,100	-				-1.2
2,849,100	-				+0.6
2,849,101	+				-0.1
2,849,102	-				-0.9
2,849,145	+				-0.6
2,849,146	-				+1.0
2,849,146	-				-0.4
2,849,146	-				+0.2
2,849,146	-				-3.0
2,849,146	-				-1.8
2,849,240	+		DZA65_RS13310	0.17	+0.9
2,849,240	+		DZA65_RS13310	0.17	-1.0
2,849,338	-		DZA65_RS13310	0.43	-0.8
2,849,378	+		DZA65_RS13310	0.54	-0.0
2,849,378	+		DZA65_RS13310	0.54	+0.3
2,849,379	-		DZA65_RS13310	0.54	-1.7
2,849,379	-		DZA65_RS13310	0.54	-0.5
2,849,383	-		DZA65_RS13310	0.55	-1.3
2,849,464	+		DZA65_RS13310	0.77	-0.1
2,849,465	-		DZA65_RS13310	0.77	-1.6
2,849,531	+				-1.7
2,849,531	+				+0.7
2,849,531	+				-0.1
2,849,532	-				-1.5
2,849,532	-				+0.2
2,849,532	-				-0.1
2,849,532	-				-0.5
2,849,532	-				+0.5
2,849,570	+				+0.8
2,849,570	+				-1.8
2,849,649	-				+0.3
2,849,678	-				-0.5
2,849,681	+				+0.1
2,849,724	+				-2.3
2,849,724	+				+0.3
2,849,724	+				-0.8
2,849,725	-				-1.4
2,849,725	-				+0.3
2,849,725	-				-0.1
2,849,806	+				-1.1
2,849,820	+				-0.5
2,849,821	-				+0.6
2,849,821	-				+1.6
2,849,823	-				+0.1
2,849,823	-				-0.1
2,849,841	-				-0.2
2,849,842	+				-0.2
2,849,843	-				-0.4
2,849,843	-				-1.3
2,849,843	-				+1.2
2,849,846	+				+0.5
2,849,847	-				-0.1
2,849,854	+				+0.1
2,849,865	-				+0.3
2,849,881	+				-0.9
2,849,890	+				-0.3
2,849,890	+				+0.4
2,849,892	+				-0.8
2,849,964	-				+1.0
2,849,964	-				+1.2
2,850,019	+				+0.3
2,850,083	+				-0.5
2,850,084	-				+0.4
2,850,084	-				-1.4
2,850,084	-				+0.1
2,850,095	+				-0.2
2,850,096	-				-0.1
2,850,096	-				-0.3
2,850,174	+		DZA65_RS13315	0.19	+0.3
2,850,231	+		DZA65_RS13315	0.34	-0.1
2,850,231	+		DZA65_RS13315	0.34	-1.4
2,850,232	-		DZA65_RS13315	0.34	-0.0
2,850,232	-		DZA65_RS13315	0.34	+0.5
2,850,232	-		DZA65_RS13315	0.34	+0.6
2,850,232	-		DZA65_RS13315	0.34	+2.3
2,850,232	-		DZA65_RS13315	0.34	-0.1
2,850,234	+		DZA65_RS13315	0.34	+0.3
2,850,234	+		DZA65_RS13315	0.34	+2.0
2,850,234	+		DZA65_RS13315	0.34	-0.3
2,850,234	+		DZA65_RS13315	0.34	-0.4
2,850,292	-		DZA65_RS13315	0.49	-1.0
2,850,292	-		DZA65_RS13315	0.49	+0.6
2,850,292	-		DZA65_RS13315	0.49	-0.2
2,850,292	-		DZA65_RS13315	0.49	-0.7
2,850,378	+		DZA65_RS13315	0.70	+0.4
2,850,381	+		DZA65_RS13315	0.71	-1.0
2,850,381	+		DZA65_RS13315	0.71	-0.8
2,850,381	+		DZA65_RS13315	0.71	-3.0
2,850,381	+		DZA65_RS13315	0.71	+1.1
2,850,381	+		DZA65_RS13315	0.71	+0.0
2,850,382	-		DZA65_RS13315	0.71	+1.7
2,850,382	-		DZA65_RS13315	0.71	+0.0
2,850,382	-		DZA65_RS13315	0.71	-1.9
2,850,413	+		DZA65_RS13315	0.79	-1.7
2,850,413	+		DZA65_RS13315	0.79	+0.2
2,850,470	+				-1.0
2,850,471	-				+1.5
2,850,471	-				+0.9