Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13270

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,839,377	+		DZA65_RS13265	0.67	+0.4
2,839,377	+		DZA65_RS13265	0.67	+0.3
2,839,377	+		DZA65_RS13265	0.67	-1.6
2,839,377	+		DZA65_RS13265	0.67	+0.3
2,839,377	+		DZA65_RS13265	0.67	-0.0
2,839,378	-		DZA65_RS13265	0.67	+0.5
2,839,378	-				+0.3
2,839,379	+		DZA65_RS13265	0.67	+0.3
2,839,379	+		DZA65_RS13265	0.67	-0.1
2,839,379	+		DZA65_RS13265	0.67	-0.5
2,839,380	-		DZA65_RS13265	0.67	+0.8
2,839,380	-		DZA65_RS13265	0.67	-0.2
2,839,380	-		DZA65_RS13265	0.67	-1.0
2,839,380	-		DZA65_RS13265	0.67	-0.2
2,839,632	+				-0.4
2,839,633	-				-0.7
2,839,636	-				-0.2
2,839,642	+				-1.7
2,839,643	-				-1.0
2,839,643	-				+0.6
2,839,643	-				-0.7
2,839,735	+				+0.9
2,839,736	-				-0.3
2,839,796	-				+0.1
2,839,802	+				+1.3
2,839,807	+				+0.0
2,839,808	-				-1.7
2,839,874	+				-3.2
2,839,878	-				-1.7
2,839,884	+				+0.3
2,839,884	+				-0.4
2,839,885	-				-0.2
2,839,888	+				-0.3
2,839,888	+				-2.4
2,839,888	+				-0.5
2,839,888	+				-0.3
2,839,889	-				-1.4
2,839,889	-				-1.6
2,839,889	-				-0.8
2,839,950	-				+2.5
2,840,025	+				+0.0
2,840,054	+				-2.3
2,840,054	+				+0.5
2,840,054	+				+0.4
2,840,055	-				+0.5
2,840,055	-				+0.4
2,840,055	-				-0.9
2,840,062	+				+0.0
2,840,069	+				-1.7
2,840,070	-				+0.5
2,840,070	-				-0.4
2,840,073	+				+0.8
2,840,073	+				+0.5
2,840,074	-				+3.1
2,840,074	-				-1.9
2,840,075	+				-0.6
2,840,076	-				-0.1
2,840,140	+				-0.1
2,840,140	+				+1.3
2,840,140	+				+0.7
2,840,140	+				+1.1
2,840,161	+				-0.7
2,840,161	+				+0.6
2,840,239	+				-2.3
2,840,239	+				-0.8
2,840,239	+				+0.0
2,840,239	+				-2.0
2,840,239	+				+0.3
2,840,239	+				-1.7
2,840,239	+				-0.7
2,840,239	+				+0.1
2,840,240	-				+0.3
2,840,240	-				-1.7
2,840,240	-				+1.3
2,840,240	-				+0.3
2,840,240	-				-1.2
2,840,240	-				-0.8
2,840,240	-				+1.5
2,840,240	-				-0.9
2,840,240	-				-1.7
2,840,240	-				+0.0
2,840,240	-				-1.3
2,840,241	+				+1.6
2,840,241	+				+2.1
2,840,241	+				+0.3
2,840,241	+				-1.1
2,840,241	+				+0.2
2,840,241	+				-2.8
2,840,242	-				+0.6
2,840,242	-				+1.3
2,840,242	-				+1.3
2,840,242	-				-1.0
2,840,245	+				-1.0
2,840,245	+				-1.7
2,840,245	+				-0.1
2,840,246	-				+1.2
2,840,246	-				+0.3
2,840,246	-				+0.9
2,840,246	-				-2.7
2,840,251	+				-0.3
2,840,251	+				+0.3
2,840,270	+				-0.4
2,840,271	-				-0.7
2,840,271	-				+0.2
2,840,271	-				-2.7
2,840,322	-				-0.8
2,840,337	+				-2.2
2,840,344	+				+0.3
2,840,345	-				+0.3
2,840,345	-				-0.1
2,840,374	+				+0.7
2,840,374	+				-0.5
2,840,406	+				+0.1
2,840,407	-				+0.9
2,840,439	+				+1.6
2,840,439	+				+0.7
2,840,439	+				-1.1
2,840,440	-				-1.3
2,840,440	-				+1.3
2,840,440	-				+0.1
2,840,440	-				-0.4
2,840,488	+				-1.4
2,840,488	+				+0.3
2,840,488	+				+0.9
2,840,678	+		DZA65_RS13270	0.23	+1.0
2,840,678	+		DZA65_RS13270	0.23	+0.8
2,840,679	-		DZA65_RS13270	0.23	+0.5
2,840,679	-		DZA65_RS13270	0.23	+0.4
2,840,679	-		DZA65_RS13270	0.23	-0.4
2,840,679	-		DZA65_RS13270	0.23	-1.3
2,840,718	+		DZA65_RS13270	0.26	+0.7
2,840,718	+		DZA65_RS13270	0.26	+0.6
2,840,719	-		DZA65_RS13270	0.26	-0.5
2,840,776	+		DZA65_RS13270	0.30	+1.0
2,840,782	+		DZA65_RS13270	0.31	+0.3
2,840,782	+		DZA65_RS13270	0.31	-0.4
2,840,783	-		DZA65_RS13270	0.31	+1.0
2,840,783	-		DZA65_RS13270	0.31	-0.7
2,840,816	-		DZA65_RS13270	0.33	-0.5
2,840,816	-		DZA65_RS13270	0.33	+0.5
2,841,046	+		DZA65_RS13270	0.49	-0.1
2,841,308	+		DZA65_RS13270	0.68	-1.7
2,841,308	+		DZA65_RS13270	0.68	+0.0
2,841,358	+		DZA65_RS13270	0.71	+0.1
2,841,518	+		DZA65_RS13270	0.83	-2.5
2,841,518	+		DZA65_RS13270	0.83	-0.7
2,841,519	-		DZA65_RS13270	0.83	+0.3
2,841,618	+		DZA65_RS13270	0.90	-0.1
2,841,618	+		DZA65_RS13270	0.90	-0.3
2,841,618	+		DZA65_RS13270	0.90	-0.7
2,841,619	-		DZA65_RS13270	0.90	-0.4
2,841,619	-		DZA65_RS13270	0.90	-1.2
2,841,696	+				-0.2
2,841,697	-				+0.4
2,841,697	-				+1.0
2,841,740	-				-0.8
2,841,740	-				+0.2
2,841,751	-				-0.6
2,841,778	+				+1.1
2,841,807	+				+1.1
2,841,808	-				-0.8
2,841,824	+				+0.8
2,841,833	+				+0.0
2,841,838	-				-0.7
2,841,838	-				+0.8
2,841,863	+				-0.3
2,841,864	-				+0.8
2,841,865	+				-0.3
2,841,890	+				-2.0
2,841,890	+				+0.6
2,841,891	-				-0.1
2,841,972	+				+1.7
2,842,023	+				-0.1
2,842,024	-				+1.9
2,842,035	+				-1.6
2,842,035	+				+0.6
2,842,070	-				-1.2
2,842,083	-				-3.3
2,842,265	+		DZA65_RS13275	0.82	+0.6
2,842,292	+				-1.0
2,842,296	+				-0.1
2,842,296	+				-0.7
2,842,297	-				+0.6
2,842,306	-				-1.7
2,842,418	+				-2.0
2,842,418	+				-0.7
2,842,418	+				+0.3
2,842,418	+				-0.5
2,842,419	-				+0.2
2,842,419	-				-0.1
2,842,419	-				+0.5
2,842,419	-				+0.3
2,842,419	-				-0.9
2,842,421	+				+1.9
2,842,422	-				-0.4
2,842,524	+				+0.9
2,842,524	+				-2.7
2,842,531	+				+0.4
2,842,532	-				+1.6
2,842,565	+				+0.0
2,842,565	+				+0.4
2,842,566	-				-1.7
2,842,566	-				-0.5