Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13100

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,809,703	+		DZA65_RS13095	0.44	-2.3
2,809,704	-		DZA65_RS13095	0.44	+0.7
2,809,704	-		DZA65_RS13095	0.44	+0.0
2,809,704	-		DZA65_RS13095	0.44	-0.7
2,809,704	-		DZA65_RS13095	0.44	-0.1
2,809,704	-		DZA65_RS13095	0.44	+0.3
2,809,746	+		DZA65_RS13095	0.48	-2.0
2,809,746	+		DZA65_RS13095	0.48	-1.7
2,809,746	+		DZA65_RS13095	0.48	+1.3
2,809,746	+		DZA65_RS13095	0.48	-0.7
2,809,746	+		DZA65_RS13095	0.48	+0.3
2,809,747	-		DZA65_RS13095	0.48	+1.3
2,809,747	-		DZA65_RS13095	0.48	-0.5
2,809,747	-		DZA65_RS13095	0.48	-1.7
2,809,747	-		DZA65_RS13095	0.48	+0.1
2,809,766	+		DZA65_RS13095	0.50	+0.9
2,809,767	-		DZA65_RS13095	0.50	+0.2
2,809,767	-		DZA65_RS13095	0.50	+0.1
2,809,767	-		DZA65_RS13095	0.50	-0.7
2,809,774	+		DZA65_RS13095	0.51	-1.3
2,809,962	+		DZA65_RS13095	0.68	-0.7
2,809,989	+		DZA65_RS13095	0.70	-0.5
2,809,989	+		DZA65_RS13095	0.70	-2.7
2,810,049	+		DZA65_RS13095	0.75	-2.9
2,810,092	+		DZA65_RS13095	0.79	-0.7
2,810,093	-		DZA65_RS13095	0.79	+0.2
2,810,180	-		DZA65_RS13095	0.87	-0.7
2,810,216	+				-0.7
2,810,217	-				-1.0
2,810,217	-				-2.3
2,810,217	-				-0.6
2,810,217	-				+0.3
2,810,217	-				+0.3
2,810,251	-				+0.3
2,810,251	-				-0.0
2,810,304	+				+0.5
2,810,304	+				-0.5
2,810,304	+				-1.3
2,810,304	+				-2.3
2,810,304	+				+0.3
2,810,304	+				+0.2
2,810,304	+				-0.8
2,810,304	+				-0.2
2,810,304	+				-1.0
2,810,304	+				-2.2
2,810,304	+				-1.7
2,810,304	+				-0.7
2,810,304	+				+1.0
2,810,304	+				-1.3
2,810,304	+				-0.1
2,810,304	+				-1.7
2,810,305	-				+0.3
2,810,305	-				-1.7
2,810,305	-				-1.0
2,810,305	-				+0.8
2,810,305	-				+1.3
2,810,305	-				+1.1
2,810,305	-				-0.9
2,810,305	-				+1.6
2,810,305	-				+1.0
2,810,305	-				-0.8
2,810,306	+				-1.1
2,810,306	+				+0.5
2,810,306	+				+0.4
2,810,306	+				-1.1
2,810,307	-				+1.1
2,810,307	-				-0.4
2,810,307	-				-0.5
2,810,307	-				+1.7
2,810,307	-				+0.3
2,810,307	-				-0.1
2,810,307	-				-2.5
2,810,328	+				-0.9
2,810,341	+				-1.3
2,810,364	+				-1.3
2,810,364	+				+0.3
2,810,364	+				-0.2
2,810,365	-				-0.9
2,810,365	-				+1.1
2,810,365	-				+0.1
2,810,365	-				-0.7
2,810,365	-				+1.6
2,810,365	-				+1.1
2,810,365	-				+1.4
2,810,414	-				+0.0
2,810,414	-				+1.6
2,810,508	+				+0.4
2,810,510	+				+1.3
2,810,511	-				-0.0
2,810,520	-				+0.6
2,810,522	+				-0.4
2,810,544	+				+0.3
2,810,544	+				+1.0
2,810,550	+				-0.0
2,810,550	+				-0.4
2,810,551	-				-2.0
2,810,551	-				-0.4
2,810,568	+				-0.4
2,810,569	-				-1.3
2,810,604	+				-1.7
2,810,604	+				+1.3
2,810,604	+				-2.0
2,810,604	+				-1.1
2,810,605	-				-2.2
2,810,608	+				-2.3
2,810,608	+				+1.0
2,810,608	+				+0.5
2,810,608	+				+0.3
2,810,621	+				+0.9
2,810,649	+				-0.4
2,810,649	+				-2.1
2,810,649	+				+0.1
2,810,649	+				-0.7
2,810,649	+				-0.9
2,810,649	+				-0.1
2,810,649	+				-0.8
2,810,649	+				+0.0
2,810,650	-				-1.8
2,810,650	-				-0.7
2,810,650	-				+1.9
2,810,651	+				-0.1
2,810,652	-				-2.0
2,810,768	+		DZA65_RS13100	0.22	-2.0
2,810,769	-		DZA65_RS13100	0.22	-2.5
2,810,769	-		DZA65_RS13100	0.22	+0.3
2,811,132	+				+0.0
2,811,143	+				+1.3
2,811,143	+				+0.7
2,811,143	+				-0.7
2,811,144	-				-0.0
2,811,175	+				-0.2
2,811,176	-				+0.8
2,811,176	-				-0.7
2,811,176	-				+1.3
2,811,176	-				-0.1
2,811,198	-				+0.6
2,811,199	+				+1.9
2,811,199	+				+0.1
2,811,200	-				+0.7
2,811,200	-				+0.2
2,811,200	-				-2.3
2,811,207	+				-1.0
2,811,208	-				+0.7
2,811,232	+				+1.4
2,811,233	-				+1.1
2,811,234	+				+0.9
2,811,234	+				+0.3
2,811,235	-				+0.5
2,811,273	-				-0.1
2,811,278	-				+0.5
2,811,295	+				-1.3
2,811,295	+				+0.3
2,811,296	-				+2.5
2,811,325	+				+0.5
2,811,325	+				+0.7
2,811,325	+				+1.5
2,811,326	-				-1.1
2,811,326	-				+0.8
2,811,326	-				-0.2
2,811,329	-				+0.5
2,811,329	-				-1.5
2,811,360	+				-1.0
2,811,361	-				+0.0
2,811,372	-				-0.7
2,811,372	-				+1.3
2,811,447	+				-1.2
2,811,447	+				-0.9
2,811,447	+				-0.3
2,811,448	-				+0.8
2,811,448	-				+0.6
2,811,448	-				+0.3
2,811,452	+				-2.0
2,811,453	-				+1.5
2,811,453	-				+1.5
2,811,453	-				-0.1
2,811,453	-				+0.6
2,811,454	+				-0.7
2,811,454	+				+0.3
2,811,454	+				-0.7
2,811,454	+				-2.3
2,811,454	+				+1.1
2,811,454	+				+0.7
2,811,454	+				-0.1
2,811,454	+				-0.4
2,811,454	+				-0.9
2,811,454	+				-0.6
2,811,454	+				+0.8
2,811,454	+				+0.9
2,811,454	+				-0.6
2,811,454	+				-2.0
2,811,454	+				-0.2
2,811,454	+				-2.0
2,811,454	+				-0.7
2,811,454	+				-1.1
2,811,454	+				-0.1
2,811,455	-				+0.7
2,811,455	-				+0.1
2,811,455	-				-1.0
2,811,455	-				+0.8
2,811,455	-				+0.3
2,811,455	-				+2.6
2,811,455	-				+0.8
2,811,455	-				+0.6
2,811,455	-				-0.6
2,811,455	-				+0.3
2,811,455	-				+0.4
2,811,455	-				+1.0
2,811,455	-				+0.5
2,811,455	-				+0.6
2,811,455	-				-0.6
2,811,455	-				+1.7
2,811,455	-				-0.4
2,811,455	-				+1.3
2,811,455	-				+0.0
2,811,455	-				+0.3
2,811,455	-				+0.1
2,811,455	-				+0.8
2,811,456	+				-0.7
2,811,456	+				-0.1
2,811,456	+				+1.1
2,811,456	+				+1.5
2,811,456	+				-0.4
2,811,456	+				+1.0
2,811,456	+				-2.3
2,811,456	+				-2.5
2,811,456	+				-0.0
2,811,456	+				+0.2
2,811,456	+				-1.3
2,811,456	+				-0.8
2,811,456	+				-2.5
2,811,456	+				+0.5
2,811,456	+				+0.1
2,811,456	+				+0.3
2,811,457	-				-1.0
2,811,457	-				+2.0
2,811,457	-				+1.7
2,811,457	-				+0.6
2,811,457	-				-0.5
2,811,457	-				-0.3
2,811,457	-				+1.3
2,811,457	-				+0.3
2,811,457	-				-0.5
2,811,457	-				+0.2
2,811,457	-				+1.2
2,811,457	-				-1.9
2,811,457	-				-0.1
2,811,457	-				-0.5
2,811,457	-				+0.1
2,811,457	-				+0.5
2,811,457	-				+0.3
2,811,457	-				+0.5
2,811,457	-				+0.1
2,811,457	-				+0.4
2,811,457	-				+0.8
2,811,458	+				-1.3
2,811,458	+				-1.3
2,811,458	+				+0.9
2,811,458	+				-1.0
2,811,459	-				-0.9
2,811,459	-				+1.6
2,811,459	-				+1.0
2,811,459	-				-1.3
2,811,459	-				+0.2
2,811,466	-				+0.5
2,811,466	-				+0.6
2,811,466	-				-1.1
2,811,467	+				-1.0
2,811,467	+				+0.7
2,811,468	-				-0.2
2,811,484	+				-1.1
2,811,485	-				-0.3
2,811,485	-				+0.7
2,811,494	-				+0.5
2,811,587	+				+0.9
2,811,587	+				-0.1
2,811,587	+				+0.2
2,811,587	+				-0.9
2,811,587	+				+0.1
2,811,587	+				-0.5
2,811,587	+				-0.4
2,811,588	-				+0.3
2,811,588	-				+2.1
2,811,588	-				-0.9
2,811,588	-				+2.8
2,811,588	-				+0.1
2,811,588	-				+1.0
2,811,588	-				-1.1
2,811,591	+				-1.7
2,811,591	+				-0.2
2,811,592	-				+1.6
2,811,592	-				+1.4
2,811,592	-				+1.5
2,811,592	-				+0.8
2,811,592	-				+0.3
2,811,595	+				+0.8
2,811,595	+				-0.0
2,811,596	-				+0.9
2,811,596	-				+0.8
2,811,596	-				+1.8
2,811,642	+				+0.3
2,811,643	-				+0.9
2,811,651	+				-1.7
2,811,652	-				+2.3
2,811,652	-				-1.0
2,811,652	-				+0.3
2,811,652	-				+0.3
2,811,652	-				+1.6
2,811,652	-				-0.7
2,811,653	+				-0.4
2,811,653	+				+0.1
2,811,653	+				-0.7
2,811,653	+				-2.5
2,811,653	+				-0.1
2,811,653	+				-0.5
2,811,653	+				+0.8
2,811,653	+				+1.4
2,811,653	+				+0.2
2,811,653	+				-0.1
2,811,654	-				+1.2
2,811,654	-				+0.4
2,811,654	-				+1.6
2,811,654	-				+0.9
2,811,654	-				+0.7
2,811,654	-				+1.1
2,811,654	-				-2.3
2,811,654	-				+0.3
2,811,654	-				+1.6
2,811,654	-				-0.5
2,811,654	-				+1.3
2,811,654	-				+1.0
2,811,692	-				-1.0
2,811,705	-				-0.3
2,811,708	+				+0.3
2,811,709	-				+1.1
2,811,757	+		DZA65_RS13105	0.11	-0.4
2,811,757	+		DZA65_RS13105	0.11	-0.9
2,811,758	-		DZA65_RS13105	0.12	+1.2
2,811,758	-		DZA65_RS13105	0.12	+1.1
2,811,758	-		DZA65_RS13105	0.12	-0.3
2,811,760	+		DZA65_RS13105	0.12	+0.1
2,811,761	-		DZA65_RS13105	0.12	+0.2
2,811,791	-		DZA65_RS13105	0.19	-0.5
2,811,793	+		DZA65_RS13105	0.20	+0.3
2,811,793	+		DZA65_RS13105	0.20	-0.1
2,811,794	-		DZA65_RS13105	0.20	+0.0
2,811,800	+		DZA65_RS13105	0.21	+1.0
2,811,800	+		DZA65_RS13105	0.21	-1.3
2,811,800	+		DZA65_RS13105	0.21	-0.4
2,811,851	-		DZA65_RS13105	0.33	+0.7
2,811,851	-		DZA65_RS13105	0.33	+1.9
2,811,877	+		DZA65_RS13105	0.39	-0.1
2,811,877	+		DZA65_RS13105	0.39	+0.5
2,811,878	-		DZA65_RS13105	0.39	+0.9
2,811,878	-		DZA65_RS13105	0.39	+1.1
2,811,878	-		DZA65_RS13105	0.39	+0.2
2,811,920	+		DZA65_RS13105	0.49	+0.5
2,811,920	+				-1.3
2,811,921	-		DZA65_RS13105	0.49	+0.7
2,811,921	-		DZA65_RS13105	0.49	+1.4
2,811,949	+		DZA65_RS13105	0.55	+0.1
2,811,950	-		DZA65_RS13105	0.55	+0.8
2,811,950	-		DZA65_RS13105	0.55	+1.5
2,811,950	-		DZA65_RS13105	0.55	-0.2
2,811,950	-		DZA65_RS13105	0.55	+0.3
2,811,978	-		DZA65_RS13105	0.62	+1.0
2,812,027	+		DZA65_RS13105	0.73	-0.7
2,812,027	+		DZA65_RS13105	0.73	-1.1
2,812,027	+		DZA65_RS13105	0.73	+0.2
2,812,028	-		DZA65_RS13105	0.73	+0.9
2,812,028	-		DZA65_RS13105	0.73	+0.7
2,812,028	-		DZA65_RS13105	0.73	+2.9
2,812,028	-		DZA65_RS13105	0.73	+0.8
2,812,028	-		DZA65_RS13105	0.73	+2.7
2,812,028	-		DZA65_RS13105	0.73	+1.4
2,812,028	-		DZA65_RS13105	0.73	+1.1
2,812,030	+		DZA65_RS13105	0.74	+0.2
2,812,030	+		DZA65_RS13105	0.74	-1.7
2,812,030	+		DZA65_RS13105	0.74	+0.0
2,812,030	+		DZA65_RS13105	0.74	+0.7
2,812,031	-		DZA65_RS13105	0.74	-0.9
2,812,031	-		DZA65_RS13105	0.74	+0.8
2,812,031	-		DZA65_RS13105	0.74	+0.0
2,812,031	-		DZA65_RS13105	0.74	+0.9
2,812,073	+		DZA65_RS13105	0.84	-1.7
2,812,100	+		DZA65_RS13105	0.90	-0.6
2,812,100	+		DZA65_RS13105	0.90	-1.7
2,812,100	+		DZA65_RS13105	0.90	+0.8
2,812,100	+		DZA65_RS13105	0.90	+0.5
2,812,100	+		DZA65_RS13105	0.90	-0.7
2,812,100	+		DZA65_RS13105	0.90	+1.2
2,812,101	-				+1.4
2,812,101	-				+0.7
2,812,118	+				-0.2
2,812,119	-				+1.1