Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12800

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,738,446	+				-0.9
2,738,647	+		DZA65_RS12795	0.14	+1.2
2,738,648	-		DZA65_RS12795	0.14	-1.3
2,738,957	-		DZA65_RS12795	0.58	+0.3
2,738,994	+		DZA65_RS12795	0.64	+0.9
2,738,995	-		DZA65_RS12795	0.64	-0.4
2,739,138	+		DZA65_RS12795	0.84	+0.7
2,739,139	-		DZA65_RS12795	0.84	+0.3
2,739,139	-		DZA65_RS12795	0.84	+0.5
2,739,139	-		DZA65_RS12795	0.84	+0.6
2,739,142	-		DZA65_RS12795	0.85	+0.2
2,739,142	-		DZA65_RS12795	0.85	-0.9
2,739,184	-				+1.7
2,739,184	-				-2.0
2,739,184	-				+0.5
2,739,224	-				+0.2
2,739,233	+				+0.5
2,739,233	+				+0.2
2,739,233	+				-0.3
2,739,233	+				+1.1
2,739,233	+				+0.1
2,739,233	+				+1.4
2,739,234	-				-2.0
2,739,234	-				-0.7
2,739,234	-				+1.0
2,739,234	-				+0.8
2,739,234	-				+0.9
2,739,234	-				-2.0
2,739,234	-				+1.3
2,739,234	-				+0.9
2,739,234	-				+1.5
2,739,234	-				-1.5
2,739,282	-				-0.4
2,739,335	-				+1.0
2,739,343	-				+0.7
2,739,343	-				-0.2
2,739,436	+				+0.3
2,739,436	+				-1.3
2,739,437	-				+0.7
2,739,437	-				+0.9
2,739,437	-				-0.5
2,739,625	+				-0.5
2,739,626	-				-0.7
2,739,681	+				-1.6
2,739,682	-				-0.1
2,739,850	-		DZA65_RS12800	0.13	+1.3
2,739,850	-		DZA65_RS12800	0.13	+0.9
2,739,967	+		DZA65_RS12800	0.16	-0.7
2,739,967	+		DZA65_RS12800	0.16	-0.1
2,739,967	+		DZA65_RS12800	0.16	-0.7
2,740,028	+		DZA65_RS12800	0.17	-1.3
2,740,138	+		DZA65_RS12800	0.20	-1.7
2,740,147	-		DZA65_RS12800	0.20	-1.2
2,740,175	-		DZA65_RS12800	0.21	-0.4
2,740,205	+		DZA65_RS12800	0.22	+0.6
2,740,205	+		DZA65_RS12800	0.22	-0.6
2,740,206	-		DZA65_RS12800	0.22	-1.5
2,740,489	+		DZA65_RS12800	0.29	+0.2
2,740,490	-		DZA65_RS12800	0.29	-0.1
2,740,490	-		DZA65_RS12800	0.29	-1.3
2,740,490	-		DZA65_RS12800	0.29	+0.3
2,740,602	-		DZA65_RS12800	0.32	-1.5
2,740,629	-		DZA65_RS12800	0.33	+1.5
2,740,672	+		DZA65_RS12800	0.34	+1.0
2,740,672	+		DZA65_RS12800	0.34	+2.3
2,740,673	-		DZA65_RS12800	0.34	+0.5
2,740,673	-		DZA65_RS12800	0.34	+0.6
2,740,673	-		DZA65_RS12800	0.34	+1.2
2,740,673	-		DZA65_RS12800	0.34	+0.4
2,740,673	-		DZA65_RS12800	0.34	+1.1
2,740,673	-		DZA65_RS12800	0.34	-0.8
2,740,718	-		DZA65_RS12800	0.35	+0.0
2,740,864	+		DZA65_RS12800	0.39	-1.7
2,740,864	+		DZA65_RS12800	0.39	-2.0
2,740,864	+		DZA65_RS12800	0.39	+0.1
2,741,050	+		DZA65_RS12800	0.44	-0.7
2,741,086	+		DZA65_RS12800	0.44	-3.2
2,741,149	+		DZA65_RS12800	0.46	+0.7
2,741,405	-		DZA65_RS12800	0.53	+0.2
2,741,467	+		DZA65_RS12800	0.54	+0.5
2,741,467	+		DZA65_RS12800	0.54	+0.5
2,741,467	+		DZA65_RS12800	0.54	-0.2
2,741,467	+		DZA65_RS12800	0.54	+0.9
2,741,468	-				-1.7
2,741,468	-		DZA65_RS12800	0.54	+1.3
2,741,468	-				-1.7
2,741,468	-		DZA65_RS12800	0.54	+0.3
2,741,468	-		DZA65_RS12800	0.54	-1.0
2,741,468	-		DZA65_RS12800	0.54	-0.7
2,741,468	-		DZA65_RS12800	0.54	-0.7
2,741,468	-		DZA65_RS12800	0.54	+0.3
2,741,472	-		DZA65_RS12800	0.54	+1.0
2,741,497	+		DZA65_RS12800	0.55	+1.3
2,741,497	+		DZA65_RS12800	0.55	-1.1
2,741,497	+		DZA65_RS12800	0.55	+0.9
2,741,497	+		DZA65_RS12800	0.55	+0.8
2,741,497	+		DZA65_RS12800	0.55	+0.8
2,741,498	-		DZA65_RS12800	0.55	-0.1
2,741,498	-		DZA65_RS12800	0.55	+0.5
2,741,498	-		DZA65_RS12800	0.55	-0.2
2,741,506	+		DZA65_RS12800	0.55	-0.0
2,741,570	-		DZA65_RS12800	0.57	-0.4
2,741,916	-		DZA65_RS12800	0.66	+1.5
2,741,963	+		DZA65_RS12800	0.67	-0.0
2,741,963	+		DZA65_RS12800	0.67	+0.6
2,742,023	-		DZA65_RS12800	0.69	-0.1
2,742,125	+		DZA65_RS12800	0.71	-0.4
2,742,125	+		DZA65_RS12800	0.71	+0.3
2,742,126	-		DZA65_RS12800	0.71	-2.0
2,742,126	-		DZA65_RS12800	0.71	+0.5
2,742,130	+		DZA65_RS12800	0.71	-0.5
2,742,130	+		DZA65_RS12800	0.71	-0.1
2,742,130	+		DZA65_RS12800	0.71	+0.7
2,742,130	+		DZA65_RS12800	0.71	+1.2
2,742,131	-		DZA65_RS12800	0.71	-0.4
2,742,136	+		DZA65_RS12800	0.71	+0.6
2,742,172	+		DZA65_RS12800	0.72	-0.0
2,742,172	+		DZA65_RS12800	0.72	-1.8
2,742,286	+		DZA65_RS12800	0.75	+1.3
2,742,368	+		DZA65_RS12800	0.77	-0.4
2,742,369	-		DZA65_RS12800	0.77	-0.3
2,742,369	-		DZA65_RS12800	0.77	-0.0
2,742,497	-		DZA65_RS12800	0.81	-1.3
2,742,497	-		DZA65_RS12800	0.81	-1.5
2,742,633	-		DZA65_RS12800	0.84	+0.4
2,742,728	+		DZA65_RS12800	0.87	+0.1
2,742,729	-		DZA65_RS12800	0.87	-0.3
2,742,790	+		DZA65_RS12800	0.88	+0.2
2,742,790	+		DZA65_RS12800	0.88	+0.0
2,742,790	+		DZA65_RS12800	0.88	+0.8
2,742,844	-		DZA65_RS12800	0.90	-0.2
2,742,875	+				-1.7
2,742,876	-				+0.2
2,743,044	+				-0.2
2,743,045	-				-1.8
2,743,045	-				+1.0
2,743,045	-				+1.2
2,743,200	+				+0.2
2,743,200	+				+0.9
2,743,200	+				-1.4
2,743,208	+				+0.3
2,743,208	+				-0.2
2,743,208	+				-0.7
2,743,257	+				-0.8
2,743,258	-				-1.2
2,743,258	-				-0.1
2,743,349	+				+0.3
2,743,360	+				-1.5
2,743,360	+				+0.3
2,743,361	-				-2.0
2,743,371	+				+3.1
2,743,381	+				+0.9
2,743,382	-				+0.5
2,743,392	+				-0.7
2,743,393	-				+0.2
2,743,393	-				-0.3
2,743,393	-				+0.9
2,743,393	-				-1.0
2,743,396	+				+0.6
2,743,397	-				-0.4
2,743,434	+				-0.8
2,743,434	+				-0.1
2,743,436	+				+0.7
2,743,436	+				+1.3
2,743,437	-				+1.1
2,743,437	-				+0.9
2,743,437	-				+0.3
2,743,519	-				+0.9
2,743,547	-				+0.5
2,743,588	+				-0.4
2,743,588	+				-2.3
2,743,588	+				+0.2
2,743,588	+				-1.0
2,743,615	-				-0.3
2,743,624	+				-1.7
2,743,624	+				-1.4
2,743,625	-				+0.0
2,743,633	+				-0.4
2,743,658	-				+0.7
2,743,892	+		DZA65_RS12805	0.48	-0.7
2,743,892	+		DZA65_RS12805	0.48	-0.7
2,743,892	+		DZA65_RS12805	0.48	-0.4
2,743,893	-		DZA65_RS12805	0.48	+0.1
2,743,893	-		DZA65_RS12805	0.48	-0.0
2,744,234	-				-0.5