Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12675

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,709,932	+				-0.3
2,709,933	-				-1.7
2,709,933	-				+1.4
2,710,065	-		DZA65_RS12670	0.22	+0.9
2,710,065	-		DZA65_RS12670	0.22	+0.4
2,710,145	+		DZA65_RS12670	0.29	+0.5
2,710,277	+		DZA65_RS12670	0.41	-0.4
2,710,277	+		DZA65_RS12670	0.41	-0.3
2,710,277	+		DZA65_RS12670	0.41	-1.3
2,710,277	+		DZA65_RS12670	0.41	-0.3
2,710,277	+		DZA65_RS12670	0.41	-1.3
2,710,277	+		DZA65_RS12670	0.41	+1.0
2,710,277	+				+0.9
2,710,277	+		DZA65_RS12670	0.41	-0.7
2,710,277	+		DZA65_RS12670	0.41	-1.0
2,710,278	-		DZA65_RS12670	0.41	+1.9
2,710,278	-		DZA65_RS12670	0.41	-0.5
2,710,278	-		DZA65_RS12670	0.41	-0.3
2,710,278	-		DZA65_RS12670	0.41	+0.1
2,710,278	-		DZA65_RS12670	0.41	-0.5
2,710,395	+		DZA65_RS12670	0.52	-0.9
2,710,396	-		DZA65_RS12670	0.52	+1.2
2,710,554	+		DZA65_RS12670	0.67	-0.0
2,710,554	+		DZA65_RS12670	0.67	+0.7
2,710,679	-		DZA65_RS12670	0.78	+0.1
2,710,727	+		DZA65_RS12670	0.82	-0.2
2,710,727	+		DZA65_RS12670	0.82	+0.1
2,710,727	+		DZA65_RS12670	0.82	-1.7
2,710,727	+		DZA65_RS12670	0.82	-3.0
2,710,728	-		DZA65_RS12670	0.83	+0.3
2,710,728	-		DZA65_RS12670	0.83	+0.6
2,710,728	-		DZA65_RS12670	0.83	-1.7
2,710,760	+		DZA65_RS12670	0.85	-0.9
2,710,761	-		DZA65_RS12670	0.86	+1.1
2,710,761	-		DZA65_RS12670	0.86	+0.9
2,710,761	-		DZA65_RS12670	0.86	+0.3
2,710,783	+		DZA65_RS12670	0.88	-1.0
2,710,783	+		DZA65_RS12670	0.88	-1.4
2,710,783	+		DZA65_RS12670	0.88	+0.3
2,710,783	+		DZA65_RS12670	0.88	-0.7
2,710,783	+		DZA65_RS12670	0.88	-1.3
2,710,784	-		DZA65_RS12670	0.88	-0.7
2,710,784	-		DZA65_RS12670	0.88	-0.4
2,710,813	+				-1.0
2,710,829	-				+0.3
2,710,835	+				-0.7
2,710,835	+				+1.4
2,710,835	+				+2.6
2,710,835	+				-0.4
2,710,836	-				+0.3
2,710,836	-				-1.4
2,710,836	-				-0.5
2,710,836	-				-0.8
2,710,836	-				+1.3
2,710,859	+				+0.3
2,710,859	+				-0.9
2,710,859	+				-1.0
2,710,859	+				+0.3
2,710,859	+				-1.5
2,710,859	+				+0.1
2,710,860	-				-0.4
2,710,871	-				+1.3
2,710,880	+				-0.1
2,710,881	-				-1.1
2,710,881	-				+0.3
2,710,881	-				-0.4
2,710,881	-				+0.8
2,710,886	+				-1.7
2,710,887	-				+0.5
2,710,887	-				+0.3
2,710,903	+				-0.9
2,710,929	-				-1.3
2,710,948	+				-0.1
2,710,948	+				+0.6
2,710,949	-				-0.5
2,710,949	-				-0.0
2,710,977	+				-0.0
2,711,004	+		DZA65_RS12675	0.15	-2.2
2,711,124	-		DZA65_RS12675	0.39	+0.5
2,711,202	+		DZA65_RS12675	0.55	+0.1
2,711,202	+		DZA65_RS12675	0.55	+1.6
2,711,202	+		DZA65_RS12675	0.55	+0.3
2,711,203	-		DZA65_RS12675	0.55	+0.0
2,711,203	-		DZA65_RS12675	0.55	-0.5
2,711,211	+		DZA65_RS12675	0.57	+0.4
2,711,211	+		DZA65_RS12675	0.57	-2.0
2,711,211	+		DZA65_RS12675	0.57	+1.3
2,711,211	+				+0.7
2,711,211	+		DZA65_RS12675	0.57	-0.7
2,711,211	+		DZA65_RS12675	0.57	+0.3
2,711,211	+		DZA65_RS12675	0.57	-0.6
2,711,211	+		DZA65_RS12675	0.57	+1.7
2,711,211	+		DZA65_RS12675	0.57	+0.2
2,711,211	+		DZA65_RS12675	0.57	+0.7
2,711,211	+		DZA65_RS12675	0.57	+0.9
2,711,212	-		DZA65_RS12675	0.57	-1.5
2,711,212	-		DZA65_RS12675	0.57	-0.7
2,711,212	-		DZA65_RS12675	0.57	-0.0
2,711,212	-		DZA65_RS12675	0.57	+0.1
2,711,212	-		DZA65_RS12675	0.57	-0.1
2,711,212	-		DZA65_RS12675	0.57	-1.0
2,711,212	-		DZA65_RS12675	0.57	+0.2
2,711,212	-		DZA65_RS12675	0.57	-1.0
2,711,212	-		DZA65_RS12675	0.57	+1.0
2,711,212	-		DZA65_RS12675	0.57	+1.0
2,711,212	-		DZA65_RS12675	0.57	+0.3
2,711,212	-		DZA65_RS12675	0.57	-0.1
2,711,358	+		DZA65_RS12675	0.87	-1.3
2,711,359	-		DZA65_RS12675	0.87	+0.0
2,711,425	-				+1.1
2,711,425	-				+0.9
2,711,432	-				+0.4
2,711,475	+				+0.7
2,711,749	+		DZA65_RS12680	0.28	+0.5
2,711,749	+				+1.3
2,711,749	+		DZA65_RS12680	0.28	-0.1
2,711,749	+		DZA65_RS12680	0.28	+1.6
2,711,749	+		DZA65_RS12680	0.28	-0.6
2,711,750	-		DZA65_RS12680	0.28	-1.3
2,711,750	-		DZA65_RS12680	0.28	-1.3
2,711,773	-		DZA65_RS12680	0.30	-2.5
2,711,795	+		DZA65_RS12680	0.32	-0.2
2,711,795	+		DZA65_RS12680	0.32	-2.0
2,711,796	-		DZA65_RS12680	0.32	+0.0
2,711,796	-		DZA65_RS12680	0.32	-0.7
2,711,796	-		DZA65_RS12680	0.32	+0.3
2,711,796	-		DZA65_RS12680	0.32	-0.2
2,711,796	-		DZA65_RS12680	0.32	+0.3
2,711,951	+		DZA65_RS12680	0.45	-1.1
2,711,951	+				+0.3
2,711,952	-				+1.3
2,712,041	+		DZA65_RS12680	0.53	-0.1
2,712,041	+		DZA65_RS12680	0.53	+0.3
2,712,041	+		DZA65_RS12680	0.53	+0.4
2,712,041	+		DZA65_RS12680	0.53	+0.2
2,712,042	-		DZA65_RS12680	0.53	-0.4
2,712,080	-		DZA65_RS12680	0.56	-0.8
2,712,104	-		DZA65_RS12680	0.58	+1.0
2,712,104	-		DZA65_RS12680	0.58	+0.5
2,712,104	-		DZA65_RS12680	0.58	+0.3
2,712,152	-		DZA65_RS12680	0.62	+0.7
2,712,152	-		DZA65_RS12680	0.62	+0.5
2,712,196	-		DZA65_RS12680	0.66	+0.3
2,712,254	+		DZA65_RS12680	0.71	-0.0
2,712,254	+		DZA65_RS12680	0.71	-0.2
2,712,254	+		DZA65_RS12680	0.71	+0.5
2,712,255	-		DZA65_RS12680	0.71	+1.3
2,712,255	-		DZA65_RS12680	0.71	-0.7
2,712,255	-		DZA65_RS12680	0.71	-0.5
2,712,255	-		DZA65_RS12680	0.71	-1.8
2,712,255	-		DZA65_RS12680	0.71	-1.5
2,712,255	-		DZA65_RS12680	0.71	+1.2
2,712,255	-		DZA65_RS12680	0.71	+0.9
2,712,255	-		DZA65_RS12680	0.71	+1.2
2,712,255	-		DZA65_RS12680	0.71	-0.0
2,712,288	+		DZA65_RS12680	0.74	-0.4
2,712,300	-		DZA65_RS12680	0.75	-0.7
2,712,300	-		DZA65_RS12680	0.75	-0.0
2,712,300	-		DZA65_RS12680	0.75	-2.0
2,712,300	-		DZA65_RS12680	0.75	+0.3
2,712,300	-		DZA65_RS12680	0.75	-0.1
2,712,300	-		DZA65_RS12680	0.75	+0.9
2,712,337	+		DZA65_RS12680	0.78	-0.9
2,712,338	-		DZA65_RS12680	0.78	+1.6
2,712,338	-		DZA65_RS12680	0.78	+0.1
2,712,338	-		DZA65_RS12680	0.78	-1.3
2,712,338	-		DZA65_RS12680	0.78	-0.7