Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12520

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,680,659	-				+0.3
2,680,659	-				+0.7
2,680,701	+				-0.1
2,680,702	-				-1.5
2,680,702	-				-1.3
2,680,702	-				+0.3
2,680,703	+				-0.9
2,680,704	-				+0.2
2,680,725	+				-0.7
2,680,726	-				+0.6
2,680,726	-				+0.6
2,680,726	-				-0.3
2,680,726	-				-0.1
2,680,731	-				-0.0
2,680,746	+				+0.5
2,680,746	+				-0.7
2,680,746	+				+1.9
2,680,747	-				-0.1
2,680,747	-				+0.5
2,680,747	-				+0.3
2,680,795	+		DZA65_RS12515	0.13	-1.1
2,680,795	+		DZA65_RS12515	0.13	-0.6
2,680,795	+		DZA65_RS12515	0.13	-0.3
2,680,795	+		DZA65_RS12515	0.13	-0.6
2,680,795	+		DZA65_RS12515	0.13	+0.3
2,680,906	+		DZA65_RS12515	0.35	-0.3
2,680,907	-		DZA65_RS12515	0.35	+0.4
2,680,912	+		DZA65_RS12515	0.36	-1.3
2,680,912	+		DZA65_RS12515	0.36	+0.4
2,680,912	+		DZA65_RS12515	0.36	-1.3
2,680,912	+		DZA65_RS12515	0.36	-0.9
2,680,913	-		DZA65_RS12515	0.36	-1.7
2,680,913	-		DZA65_RS12515	0.36	+1.7
2,680,913	-		DZA65_RS12515	0.36	+1.3
2,680,913	-		DZA65_RS12515	0.36	-0.3
2,680,945	-		DZA65_RS12515	0.43	+0.4
2,681,031	+		DZA65_RS12515	0.60	-1.7
2,681,032	-		DZA65_RS12515	0.60	-0.3
2,681,032	-		DZA65_RS12515	0.60	+1.0
2,681,093	+		DZA65_RS12515	0.72	-0.9
2,681,152	+		DZA65_RS12515	0.83	-2.3
2,681,203	+				+0.9
2,681,203	+				-0.7
2,681,204	-				+0.0
2,681,204	-				+1.3
2,681,217	-				+0.7
2,681,245	+				+1.0
2,681,246	-				-1.3
2,681,297	+				+0.3
2,681,297	+				-0.0
2,681,298	-				+0.3
2,681,298	-				+0.1
2,681,301	-				-2.9
2,681,321	+				-1.1
2,681,322	-				-0.2
2,681,322	-				+0.7
2,681,322	-				+0.2
2,681,322	-				+0.3
2,681,322	-				-0.0
2,681,382	-				+1.9
2,681,383	+				-0.8
2,681,383	+				-1.3
2,681,383	+				+0.9
2,681,383	+				+0.0
2,681,384	-				+1.5
2,681,466	+				+0.3
2,681,467	-				+0.8
2,681,467	-				+1.0
2,681,498	+				-0.9
2,681,499	-				-1.1
2,681,499	-				-0.5
2,681,503	+				-0.1
2,681,503	+				-1.0
2,681,503	+				-0.7
2,681,504	-				-0.2
2,681,504	-				-0.5
2,681,504	-				-0.1
2,681,504	-				-0.7
2,681,508	+				-1.5
2,681,508	+				-1.3
2,681,509	-				+0.3
2,681,511	+				+0.3
2,681,511	+				-2.4
2,681,511	+				+0.5
2,681,512	-				-0.4
2,681,512	-				-0.8
2,681,512	-				+0.8
2,681,512	-				+0.0
2,681,512	-				+0.9
2,681,512	-				+0.3
2,681,541	+				+0.5
2,681,542	-				+1.0
2,681,551	+				-0.7
2,681,551	+				-0.8
2,681,552	-				+1.0
2,681,554	-				+0.4
2,681,779	-		DZA65_RS12520	0.19	+0.3
2,681,852	+		DZA65_RS12520	0.25	+1.3
2,681,853	-		DZA65_RS12520	0.25	+1.0
2,681,853	-		DZA65_RS12520	0.25	-0.7
2,681,885	+		DZA65_RS12520	0.28	+0.5
2,681,885	+		DZA65_RS12520	0.28	-2.0
2,681,885	+		DZA65_RS12520	0.28	-1.7
2,681,886	-		DZA65_RS12520	0.28	+0.5
2,681,886	-		DZA65_RS12520	0.28	+0.9
2,681,886	-		DZA65_RS12520	0.28	+0.3
2,681,898	+		DZA65_RS12520	0.29	-0.5
2,681,899	-		DZA65_RS12520	0.29	-0.7
2,681,899	-		DZA65_RS12520	0.29	-0.3
2,681,924	+		DZA65_RS12520	0.31	+1.9
2,681,925	-		DZA65_RS12520	0.31	-0.6
2,681,925	-		DZA65_RS12520	0.31	+0.1
2,681,938	+				-1.7
2,681,938	+		DZA65_RS12520	0.32	-0.1
2,681,939	-		DZA65_RS12520	0.32	-0.0
2,681,939	-		DZA65_RS12520	0.32	+1.0
2,681,939	-		DZA65_RS12520	0.32	+0.3
2,682,028	+		DZA65_RS12520	0.39	+0.3
2,682,028	+		DZA65_RS12520	0.39	+0.4
2,682,028	+		DZA65_RS12520	0.39	+2.3
2,682,028	+		DZA65_RS12520	0.39	-0.1
2,682,028	+		DZA65_RS12520	0.39	-1.4
2,682,029	-		DZA65_RS12520	0.39	-0.2
2,682,029	-		DZA65_RS12520	0.39	-0.3
2,682,029	-		DZA65_RS12520	0.39	+0.6
2,682,029	-		DZA65_RS12520	0.39	-0.3
2,682,029	-		DZA65_RS12520	0.39	-2.5
2,682,057	+		DZA65_RS12520	0.42	+1.4
2,682,058	-		DZA65_RS12520	0.42	+0.2
2,682,306	+		DZA65_RS12520	0.62	-1.3
2,682,307	-		DZA65_RS12520	0.62	+0.3
2,682,307	-		DZA65_RS12520	0.62	+0.3
2,682,307	-		DZA65_RS12520	0.62	+0.8
2,682,388	+		DZA65_RS12520	0.68	+0.7
2,682,432	+		DZA65_RS12520	0.72	+0.3
2,682,432	+		DZA65_RS12520	0.72	+1.0
2,682,432	+		DZA65_RS12520	0.72	-0.7
2,682,432	+		DZA65_RS12520	0.72	+0.9
2,682,432	+		DZA65_RS12520	0.72	-0.3
2,682,432	+		DZA65_RS12520	0.72	+0.3
2,682,432	+		DZA65_RS12520	0.72	-1.0
2,682,433	-		DZA65_RS12520	0.72	+1.3
2,682,433	-		DZA65_RS12520	0.72	-1.5
2,682,433	-		DZA65_RS12520	0.72	-1.1
2,682,433	-		DZA65_RS12520	0.72	-0.4
2,682,433	-		DZA65_RS12520	0.72	-2.7
2,682,433	-		DZA65_RS12520	0.72	-0.3
2,682,433	-		DZA65_RS12520	0.72	+1.4
2,682,509	+		DZA65_RS12520	0.78	+0.3
2,682,509	+		DZA65_RS12520	0.78	-0.1
2,682,509	+		DZA65_RS12520	0.78	+0.4
2,682,509	+		DZA65_RS12520	0.78	-0.2
2,682,509	+		DZA65_RS12520	0.78	-0.7
2,682,510	-		DZA65_RS12520	0.78	-0.2
2,682,510	-		DZA65_RS12520	0.78	-0.3
2,682,510	-		DZA65_RS12520	0.78	-0.1
2,682,510	-		DZA65_RS12520	0.78	-1.3
2,682,510	-		DZA65_RS12520	0.78	-0.8
2,682,510	-		DZA65_RS12520	0.78	-0.7
2,682,510	-		DZA65_RS12520	0.78	-0.2
2,682,592	-		DZA65_RS12520	0.85	+0.6
2,682,645	+		DZA65_RS12520	0.89	-0.2
2,682,646	-		DZA65_RS12520	0.89	+1.4
2,682,646	-		DZA65_RS12520	0.89	-0.0
2,682,646	-		DZA65_RS12520	0.89	+0.9
2,682,646	-		DZA65_RS12520	0.89	+0.2
2,682,646	-		DZA65_RS12520	0.89	+0.0
2,682,646	-		DZA65_RS12520	0.89	+0.5
2,682,646	-		DZA65_RS12520	0.89	+1.3
2,682,682	-				+0.5
2,682,703	+				+0.5
2,682,703	+				+0.7
2,682,704	-				-0.4
2,682,731	+				-0.9
2,682,731	+				+0.4
2,682,732	-				-0.7
2,682,732	-				-0.7
2,682,732	-				-1.1
2,682,732	-				+0.8
2,682,787	+				-0.2
2,682,800	-				+0.5
2,682,800	-				+0.3
2,682,808	+				+0.7
2,682,808	+				-0.2
2,682,808	+				-0.2
2,682,809	-				-0.5
2,682,809	-				+0.6
2,682,809	-				+0.0
2,682,809	-				+0.7
2,682,809	-				-0.3
2,682,809	-				-0.8
2,682,809	-				-0.3
2,682,932	+				-0.1
2,682,932	+				+0.8
2,682,933	-				+0.0
2,683,035	+				+1.9
2,683,035	+				+0.5
2,683,036	-				-1.9
2,683,036	-				-0.5
2,683,054	+				-0.7
2,683,054	+				+1.0
2,683,055	-				-0.7
2,683,071	+				+2.7
2,683,072	-				-1.3
2,683,072	-				+0.4
2,683,208	+		DZA65_RS12525	0.15	+0.9
2,683,208	+		DZA65_RS12525	0.15	+0.1
2,683,208	+		DZA65_RS12525	0.15	-0.5
2,683,208	+		DZA65_RS12525	0.15	-0.7
2,683,208	+		DZA65_RS12525	0.15	-0.3
2,683,208	+		DZA65_RS12525	0.15	+1.9
2,683,209	-		DZA65_RS12525	0.15	+0.3
2,683,209	-		DZA65_RS12525	0.15	-0.2
2,683,209	-		DZA65_RS12525	0.15	-1.3
2,683,209	-		DZA65_RS12525	0.15	+1.9
2,683,209	-		DZA65_RS12525	0.15	+0.1
2,683,209	-		DZA65_RS12525	0.15	+0.7
2,683,209	-		DZA65_RS12525	0.15	+0.7
2,683,209	-		DZA65_RS12525	0.15	-0.7
2,683,209	-		DZA65_RS12525	0.15	+1.3
2,683,252	+		DZA65_RS12525	0.16	-0.2
2,683,278	-		DZA65_RS12525	0.17	-1.1
2,683,305	+		DZA65_RS12525	0.19	-0.5
2,683,306	-		DZA65_RS12525	0.19	+1.2
2,683,306	-		DZA65_RS12525	0.19	+0.5
2,683,306	-		DZA65_RS12525	0.19	-0.0
2,683,355	+		DZA65_RS12525	0.20	-0.5
2,683,356	-		DZA65_RS12525	0.20	-1.5
2,683,385	+		DZA65_RS12525	0.22	+1.0
2,683,386	-		DZA65_RS12525	0.22	-0.2
2,683,391	+		DZA65_RS12525	0.22	-0.9
2,683,391	+		DZA65_RS12525	0.22	-0.1
2,683,619	+		DZA65_RS12525	0.30	+2.1
2,683,619	+		DZA65_RS12525	0.30	-0.0
2,683,620	-		DZA65_RS12525	0.30	+0.3
2,683,620	-		DZA65_RS12525	0.30	+2.6
2,683,620	-		DZA65_RS12525	0.30	-0.3
2,683,620	-		DZA65_RS12525	0.30	-0.9
2,683,709	-		DZA65_RS12525	0.34	-0.5
2,683,709	-		DZA65_RS12525	0.34	-2.4
2,683,709	-				+0.3
2,683,722	-		DZA65_RS12525	0.34	-1.5