Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12430

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,656,098	-				+0.2
2,656,122	+				-1.1
2,656,169	-		DZA65_RS12425	0.10	+0.4
2,656,246	-		DZA65_RS12425	0.18	-0.1
2,656,423	-		DZA65_RS12425	0.36	+0.9
2,656,434	+		DZA65_RS12425	0.37	-0.2
2,656,447	+		DZA65_RS12425	0.38	-1.5
2,656,448	-		DZA65_RS12425	0.39	-1.2
2,656,523	-		DZA65_RS12425	0.46	-0.7
2,656,527	-		DZA65_RS12425	0.47	-1.3
2,656,582	+		DZA65_RS12425	0.52	+0.9
2,656,582	+		DZA65_RS12425	0.52	-0.5
2,656,583	-		DZA65_RS12425	0.52	+0.1
2,656,611	+		DZA65_RS12425	0.55	+1.7
2,656,612	-		DZA65_RS12425	0.55	-2.3
2,656,612	-		DZA65_RS12425	0.55	-2.5
2,656,654	-		DZA65_RS12425	0.60	-0.6
2,656,664	+		DZA65_RS12425	0.61	+0.3
2,656,664	+		DZA65_RS12425	0.61	+0.3
2,656,665	-		DZA65_RS12425	0.61	-1.7
2,656,706	-		DZA65_RS12425	0.65	-0.6
2,656,717	-		DZA65_RS12425	0.66	-1.4
2,656,721	+		DZA65_RS12425	0.66	-0.4
2,656,772	-		DZA65_RS12425	0.72	-0.6
2,656,782	+		DZA65_RS12425	0.73	+1.3
2,656,881	+		DZA65_RS12425	0.83	+0.7
2,656,881	+		DZA65_RS12425	0.83	+0.3
2,656,884	+		DZA65_RS12425	0.83	+0.6
2,656,885	-		DZA65_RS12425	0.83	+0.5
2,657,046	+				-0.2
2,657,046	+				+0.3
2,657,047	-				-0.3
2,657,060	+				-0.8
2,657,061	-				+0.3
2,657,068	+				-1.7
2,657,068	+				+0.1
2,657,072	+				+0.6
2,657,072	+				-1.0
2,657,073	-				-1.9
2,657,073	-				-0.1
2,657,220	+		DZA65_RS12430	0.14	-0.4
2,657,220	+		DZA65_RS12430	0.14	-2.4
2,657,240	+		DZA65_RS12430	0.16	-0.7
2,657,240	+		DZA65_RS12430	0.16	-0.4
2,657,240	+		DZA65_RS12430	0.16	-0.1
2,657,241	-		DZA65_RS12430	0.16	-1.5
2,657,244	-		DZA65_RS12430	0.16	-0.7
2,657,244	-		DZA65_RS12430	0.16	+0.9
2,657,246	+		DZA65_RS12430	0.16	-1.0
2,657,247	-		DZA65_RS12430	0.17	+0.8
2,657,355	+		DZA65_RS12430	0.27	-0.5
2,657,468	-		DZA65_RS12430	0.38	-0.3
2,657,493	-		DZA65_RS12430	0.40	+0.2
2,657,499	+		DZA65_RS12430	0.41	+0.6
2,657,499	+		DZA65_RS12430	0.41	-0.9
2,657,499	+		DZA65_RS12430	0.41	-1.7
2,657,511	+		DZA65_RS12430	0.42	-0.6
2,657,512	-		DZA65_RS12430	0.42	-2.2
2,657,514	-		DZA65_RS12430	0.42	+0.3
2,657,514	-		DZA65_RS12430	0.42	-1.7
2,657,514	-		DZA65_RS12430	0.42	-0.3
2,657,575	+		DZA65_RS12430	0.48	-0.1
2,657,594	+		DZA65_RS12430	0.50	+0.4
2,657,594	+		DZA65_RS12430	0.50	-0.1
2,657,595	-		DZA65_RS12430	0.50	-1.1
2,657,595	-		DZA65_RS12430	0.50	-1.7
2,657,621	+		DZA65_RS12430	0.53	-0.5
2,657,621	+		DZA65_RS12430	0.53	+0.3
2,657,621	+		DZA65_RS12430	0.53	-0.3
2,657,622	-		DZA65_RS12430	0.53	-2.2
2,657,666	-		DZA65_RS12430	0.57	-0.3
2,657,666	-				-1.3
2,657,704	+		DZA65_RS12430	0.61	-1.4
2,657,704	+				+2.6
2,657,704	+		DZA65_RS12430	0.61	-0.7
2,657,704	+		DZA65_RS12430	0.61	-0.1
2,657,704	+		DZA65_RS12430	0.61	+0.3
2,657,704	+		DZA65_RS12430	0.61	+0.7
2,657,705	-		DZA65_RS12430	0.61	+0.6
2,657,705	-		DZA65_RS12430	0.61	-2.1
2,657,705	-		DZA65_RS12430	0.61	+0.4
2,657,705	-		DZA65_RS12430	0.61	+1.3
2,657,705	-		DZA65_RS12430	0.61	+0.3
2,657,708	+		DZA65_RS12430	0.61	-0.1
2,657,708	+		DZA65_RS12430	0.61	+0.3
2,657,708	+		DZA65_RS12430	0.61	+0.0
2,657,708	+		DZA65_RS12430	0.61	-0.6
2,657,708	+		DZA65_RS12430	0.61	+0.4
2,657,708	+		DZA65_RS12430	0.61	-0.5
2,657,708	+		DZA65_RS12430	0.61	-0.2
2,657,708	+		DZA65_RS12430	0.61	-0.1
2,657,708	+		DZA65_RS12430	0.61	-1.1
2,657,709	-		DZA65_RS12430	0.61	+0.8
2,657,709	-		DZA65_RS12430	0.61	-0.1
2,657,709	-		DZA65_RS12430	0.61	-0.5
2,657,715	+		DZA65_RS12430	0.62	-1.7
2,657,778	+		DZA65_RS12430	0.68	-1.3
2,657,779	-		DZA65_RS12430	0.68	-0.5
2,657,779	-		DZA65_RS12430	0.68	-0.7
2,657,779	-		DZA65_RS12430	0.68	-0.1
2,657,840	+		DZA65_RS12430	0.74	-0.3
2,657,921	+		DZA65_RS12430	0.82	-1.4
2,657,922	-		DZA65_RS12430	0.82	+1.1
2,657,952	-		DZA65_RS12430	0.85	-0.7
2,657,952	-		DZA65_RS12430	0.85	-1.1
2,657,994	+		DZA65_RS12430	0.89	+0.7
2,657,994	+		DZA65_RS12430	0.89	-2.9
2,658,026	-				-0.7
2,658,026	-				-0.2
2,658,105	+				+1.3
2,658,118	+				-1.3
2,658,119	-				+1.3
2,658,120	+				+0.0
2,658,120	+				-0.2
2,658,120	+				+0.5
2,658,121	-				+0.5
2,658,166	+				+0.4
2,658,167	-				+1.9
2,658,289	+				-1.7
2,658,289	+				+1.6
2,658,304	+				-2.3
2,658,308	+				-0.1
2,658,308	+				-0.7
2,658,308	+				-1.6
2,658,336	-				+0.8
2,658,345	-				+0.4
2,658,348	-				+0.3
2,658,349	+				+0.4
2,658,349	+				+1.3
2,658,350	-				+0.0
2,658,350	-				-1.7
2,658,350	-				-0.3
2,658,350	-				+1.4
2,658,397	-				+2.1
2,658,403	+				-0.3
2,658,403	+				-1.4
2,658,404	-				+0.0
2,658,405	+				+0.9
2,658,421	+				+0.5
2,658,422	-				-1.5
2,658,423	+				-0.2
2,658,424	-				-1.3
2,658,447	+		DZA65_RS12435	0.11	-2.1
2,658,448	-		DZA65_RS12435	0.11	+0.9
2,658,612	+		DZA65_RS12435	0.36	-1.1
2,658,625	+		DZA65_RS12435	0.38	-0.3
2,658,645	+		DZA65_RS12435	0.42	-1.4
2,658,675	+		DZA65_RS12435	0.46	-1.0
2,658,675	+		DZA65_RS12435	0.46	+0.4
2,658,678	-		DZA65_RS12435	0.47	-2.2
2,658,678	-		DZA65_RS12435	0.47	-0.5
2,658,726	+		DZA65_RS12435	0.54	-0.4
2,658,726	+		DZA65_RS12435	0.54	-1.5
2,658,726	+		DZA65_RS12435	0.54	-1.6
2,658,730	+		DZA65_RS12435	0.55	-1.2
2,658,730	+		DZA65_RS12435	0.55	-1.1
2,658,731	-		DZA65_RS12435	0.55	-0.3
2,658,744	+		DZA65_RS12435	0.57	-1.5
2,658,744	+		DZA65_RS12435	0.57	-1.3
2,658,758	+		DZA65_RS12435	0.59	-0.5
2,658,759	-		DZA65_RS12435	0.59	-0.3
2,658,764	-		DZA65_RS12435	0.60	-1.1
2,658,805	-		DZA65_RS12435	0.66	+0.0
2,658,805	-		DZA65_RS12435	0.66	+0.8
2,658,805	-		DZA65_RS12435	0.66	-2.2
2,658,862	+		DZA65_RS12435	0.75	-0.5
2,658,908	+		DZA65_RS12435	0.82	-1.3
2,658,949	-		DZA65_RS12435	0.88	-0.5
2,658,972	-				+0.6