Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12410

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,651,335	+		DZA65_RS12405	0.39	+1.3
2,651,336	-				+2.1
2,651,336	-		DZA65_RS12405	0.39	-0.7
2,651,336	-		DZA65_RS12405	0.39	-0.1
2,651,336	-		DZA65_RS12405	0.39	+0.3
2,651,336	-		DZA65_RS12405	0.39	+0.7
2,651,338	+		DZA65_RS12405	0.40	+0.6
2,651,338	+		DZA65_RS12405	0.40	-2.1
2,651,338	+		DZA65_RS12405	0.40	+0.5
2,651,339	-		DZA65_RS12405	0.40	+0.5
2,651,339	-		DZA65_RS12405	0.40	-0.7
2,651,546	+		DZA65_RS12405	0.56	-0.0
2,651,796	-		DZA65_RS12405	0.76	+0.8
2,651,848	+		DZA65_RS12405	0.80	+1.5
2,651,848	+		DZA65_RS12405	0.80	+0.7
2,651,848	+		DZA65_RS12405	0.80	+0.3
2,651,848	+		DZA65_RS12405	0.80	+0.1
2,651,848	+		DZA65_RS12405	0.80	-0.4
2,651,848	+		DZA65_RS12405	0.80	+0.4
2,651,848	+		DZA65_RS12405	0.80	+0.2
2,651,848	+		DZA65_RS12405	0.80	-0.3
2,651,848	+		DZA65_RS12405	0.80	+0.8
2,651,849	-		DZA65_RS12405	0.80	+1.3
2,651,849	-		DZA65_RS12405	0.80	-0.7
2,651,849	-		DZA65_RS12405	0.80	-0.1
2,651,976	-				+0.6
2,651,976	-				-1.3
2,651,978	-				-0.3
2,651,978	-				-1.1
2,651,978	-				-1.3
2,651,978	-				-0.3
2,652,096	-				-1.7
2,652,096	-				+0.3
2,652,096	-				+0.6
2,652,150	+				-0.2
2,652,167	+				+0.6
2,652,167	+				+0.1
2,652,167	+				+0.7
2,652,168	-				+0.5
2,652,171	+				+2.1
2,652,172	-				-0.3
2,652,172	-				-0.7
2,652,188	+				+0.3
2,652,190	+				+0.1
2,652,191	-				+0.3
2,652,250	+				-0.1
2,652,251	-				-0.5
2,652,304	-				-0.9
2,652,404	+		DZA65_RS12410	0.12	+0.0
2,652,405	-		DZA65_RS12410	0.12	+0.3
2,652,444	+		DZA65_RS12410	0.15	-0.4
2,652,444	+		DZA65_RS12410	0.15	+0.1
2,652,444	+		DZA65_RS12410	0.15	+0.8
2,652,444	+		DZA65_RS12410	0.15	+0.3
2,652,444	+		DZA65_RS12410	0.15	+2.6
2,652,445	-		DZA65_RS12410	0.15	-0.4
2,652,445	-		DZA65_RS12410	0.15	+0.1
2,652,445	-		DZA65_RS12410	0.15	-0.3
2,652,445	-		DZA65_RS12410	0.15	-2.3
2,652,474	+		DZA65_RS12410	0.17	-1.8
2,652,474	+		DZA65_RS12410	0.17	-0.1
2,652,474	+		DZA65_RS12410	0.17	+0.9
2,652,474	+		DZA65_RS12410	0.17	-1.7
2,652,474	+		DZA65_RS12410	0.17	+1.3
2,652,474	+		DZA65_RS12410	0.17	-0.7
2,652,475	-		DZA65_RS12410	0.17	-0.4
2,652,475	-		DZA65_RS12410	0.17	+0.6
2,652,475	-		DZA65_RS12410	0.17	-0.2
2,652,475	-		DZA65_RS12410	0.17	+0.1
2,652,475	-		DZA65_RS12410	0.17	-0.1
2,652,524	+		DZA65_RS12410	0.20	-2.9
2,652,720	+		DZA65_RS12410	0.33	-0.7
2,652,720	+		DZA65_RS12410	0.33	+0.6
2,652,768	+		DZA65_RS12410	0.36	-1.5
2,652,769	-		DZA65_RS12410	0.36	-0.1
2,652,798	-		DZA65_RS12410	0.38	+0.5
2,652,798	-		DZA65_RS12410	0.38	+0.4
2,652,866	+		DZA65_RS12410	0.43	+0.0
2,652,866	+		DZA65_RS12410	0.43	+0.0
2,653,135	-		DZA65_RS12410	0.61	-0.0
2,653,135	-		DZA65_RS12410	0.61	-0.7
2,653,209	+		DZA65_RS12410	0.66	+0.5
2,653,209	+		DZA65_RS12410	0.66	-0.3
2,653,209	+		DZA65_RS12410	0.66	-2.5
2,653,209	+		DZA65_RS12410	0.66	+0.3
2,653,209	+		DZA65_RS12410	0.66	-0.1
2,653,209	+		DZA65_RS12410	0.66	-0.5
2,653,209	+		DZA65_RS12410	0.66	-0.6
2,653,209	+		DZA65_RS12410	0.66	-0.5
2,653,210	-		DZA65_RS12410	0.66	-0.4
2,653,210	-		DZA65_RS12410	0.66	+0.4
2,653,257	+		DZA65_RS12410	0.69	+0.9
2,653,257	+		DZA65_RS12410	0.69	+2.1
2,653,257	+		DZA65_RS12410	0.69	+0.4
2,653,257	+		DZA65_RS12410	0.69	+0.5
2,653,258	-		DZA65_RS12410	0.69	+0.3
2,653,258	-		DZA65_RS12410	0.69	-0.5
2,653,312	+		DZA65_RS12410	0.73	-1.3
2,653,312	+		DZA65_RS12410	0.73	-1.7
2,653,312	+		DZA65_RS12410	0.73	-0.1
2,653,312	+		DZA65_RS12410	0.73	-1.1
2,653,312	+		DZA65_RS12410	0.73	-1.7
2,653,312	+		DZA65_RS12410	0.73	-0.9
2,653,312	+		DZA65_RS12410	0.73	+2.2
2,653,313	-		DZA65_RS12410	0.73	-1.1
2,653,313	-		DZA65_RS12410	0.73	+0.3
2,653,342	+		DZA65_RS12410	0.75	-1.1
2,653,342	+		DZA65_RS12410	0.75	-0.7
2,653,342	+		DZA65_RS12410	0.75	+0.1
2,653,343	-		DZA65_RS12410	0.75	+2.0
2,653,343	-		DZA65_RS12410	0.75	-0.5
2,653,375	-		DZA65_RS12410	0.77	-0.1
2,653,464	+		DZA65_RS12410	0.83	-0.5
2,653,465	-		DZA65_RS12410	0.83	+2.3
2,653,473	+		DZA65_RS12410	0.84	-0.5
2,653,473	+		DZA65_RS12410	0.84	+1.0
2,653,474	-		DZA65_RS12410	0.84	-0.2
2,653,474	-		DZA65_RS12410	0.84	-2.9
2,653,474	-		DZA65_RS12410	0.84	+0.0
2,653,588	-				+0.4
2,653,588	-				+0.6
2,653,588	-				+1.6
2,653,588	-				-0.4
2,653,588	-				-0.1
2,653,588	-				-0.4
2,653,590	+				-2.4
2,653,590	+				+0.5
2,653,590	+				+0.0
2,653,590	+				+0.5
2,653,591	-				+0.9
2,653,591	-				-0.7
2,653,591	-				-0.6
2,653,667	+				-1.0
2,653,673	-				-1.1
2,653,681	-				-0.5
2,653,760	+				-1.9
2,653,761	-				-0.1
2,653,761	-				-0.7
2,653,761	-				+0.3
2,653,761	-				-0.5
2,653,761	-				+0.3
2,653,764	+				-2.1
2,653,764	+				+0.3
2,653,764	+				-0.1
2,653,764	+				-0.6
2,653,764	+				+0.2
2,653,764	+				+0.3
2,653,764	+				-0.3
2,653,765	-				+1.9
2,653,765	-				-0.2
2,653,765	-				-1.1
2,653,826	-				-1.6
2,653,829	+				-1.3
2,653,860	+				+0.1
2,653,860	+				+0.0
2,653,860	+				-0.9
2,653,860	+				+1.3
2,653,860	+				-0.3
2,653,860	+				+0.2
2,653,861	-				+0.1
2,653,861	-				+0.6
2,653,861	-				-0.8
2,653,876	+				+0.8
2,653,876	+				-0.7
2,653,877	-				+0.8
2,653,877	-				-0.7
2,653,877	-				+0.3
2,653,890	+				+0.3
2,653,890	+				-0.9
2,653,890	+				-2.3
2,653,911	+				+0.3
2,653,911	+				+1.9
2,653,912	-				+0.3
2,653,912	-				-1.0
2,653,912	-				-0.3
2,653,912	-				+0.3
2,653,934	+				+0.9
2,653,934	+				-0.5
2,653,935	-				+0.6
2,653,948	+				-0.7
2,653,948	+				+3.1
2,653,949	-				-0.1
2,653,991	+				-0.3
2,653,991	+				-1.9
2,654,019	+				+0.8
2,654,038	+				+0.6
2,654,055	+				-0.6
2,654,055	+				+0.0
2,654,056	-				+0.8
2,654,056	-				+0.0
2,654,061	+				-0.7
2,654,061	+				+0.3
2,654,061	+				+1.3
2,654,061	+				-3.1
2,654,062	-				-0.1
2,654,062	-				-0.1
2,654,062	-				-0.7
2,654,062	-				+0.8
2,654,062	-				-2.3
2,654,062	-				+0.0
2,654,062	-				-0.1
2,654,065	+				-0.7
2,654,065	+				-0.7
2,654,065	+				-1.0
2,654,066	-				+0.3
2,654,066	-				-2.3
2,654,066	-				-1.8
2,654,085	-				+2.2
2,654,117	+				+0.9
2,654,117	+				+0.8
2,654,117	+				-2.0
2,654,117	+				-0.2
2,654,117	+				-0.1
2,654,117	+				+0.3
2,654,117	+				+1.3
2,654,117	+				+0.3
2,654,117	+				+0.6
2,654,118	-				-1.0
2,654,118	-				-0.6
2,654,118	-				+0.5
2,654,118	-				-0.1
2,654,118	-				+0.0
2,654,118	-				+0.3
2,654,118	-				+0.9
2,654,118	-				-0.6
2,654,122	+				+0.6
2,654,122	+				+0.6
2,654,122	+				+0.0
2,654,122	+				-2.1
2,654,123	-				-0.1
2,654,147	+				-3.4
2,654,363	+		DZA65_RS12415	0.23	-1.0
2,654,363	+		DZA65_RS12415	0.23	-1.2
2,654,363	+		DZA65_RS12415	0.23	+0.3
2,654,363	+		DZA65_RS12415	0.23	-0.7
2,654,364	-		DZA65_RS12415	0.23	+1.3
2,654,364	-		DZA65_RS12415	0.23	+0.3
2,654,669	-		DZA65_RS12415	0.51	+1.0
2,654,669	-		DZA65_RS12415	0.51	+0.3
2,654,678	+		DZA65_RS12415	0.52	-0.1
2,654,678	+		DZA65_RS12415	0.52	-1.6
2,654,678	+		DZA65_RS12415	0.52	-1.1
2,654,678	+		DZA65_RS12415	0.52	+1.3
2,654,679	-		DZA65_RS12415	0.52	-1.4
2,654,679	-		DZA65_RS12415	0.52	+0.0
2,654,679	-		DZA65_RS12415	0.52	-2.3
2,654,679	-		DZA65_RS12415	0.52	+0.9