Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11885

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,536,328	+				-1.3
2,536,328	+				+0.9
2,536,328	+				+2.0
2,536,328	+				+0.3
2,536,329	-				-0.3
2,536,329	-				-0.1
2,536,329	-				-0.5
2,536,329	-				-0.6
2,536,329	-				-1.0
2,536,334	+				+0.0
2,536,334	+				-0.7
2,536,334	+				-2.5
2,536,335	-				-0.5
2,536,338	+				+0.3
2,536,338	+				+0.9
2,536,338	+				+0.5
2,536,338	+				+0.7
2,536,339	-				-1.0
2,536,339	-				-2.5
2,536,358	-				+0.2
2,536,523	-				-0.5
2,536,549	-				+0.6
2,536,554	+				+0.8
2,536,562	+				+0.0
2,536,638	+				-2.2
2,536,638	+				-1.0
2,536,649	+				-0.1
2,536,726	+		DZA65_RS11880	0.17	-1.1
2,536,726	+		DZA65_RS11880	0.17	-1.0
2,536,726	+		DZA65_RS11880	0.17	+0.5
2,536,727	-		DZA65_RS11880	0.17	-2.5
2,536,739	-		DZA65_RS11880	0.19	+0.8
2,536,758	+		DZA65_RS11880	0.21	+0.3
2,536,759	-		DZA65_RS11880	0.22	+0.8
2,536,759	-		DZA65_RS11880	0.22	-0.2
2,536,906	+		DZA65_RS11880	0.43	+0.2
2,536,906	+		DZA65_RS11880	0.43	+1.1
2,536,906	+		DZA65_RS11880	0.43	+0.4
2,536,907	-		DZA65_RS11880	0.44	-2.1
2,536,907	-		DZA65_RS11880	0.44	-1.3
2,536,907	-		DZA65_RS11880	0.44	-0.6
2,536,907	-		DZA65_RS11880	0.44	-0.4
2,536,907	-		DZA65_RS11880	0.44	+0.7
2,536,907	-		DZA65_RS11880	0.44	+0.4
2,536,915	-		DZA65_RS11880	0.45	-0.0
2,536,928	+		DZA65_RS11880	0.47	-0.5
2,536,928	+		DZA65_RS11880	0.47	+0.7
2,536,928	+		DZA65_RS11880	0.47	-0.8
2,536,929	-		DZA65_RS11880	0.47	-2.0
2,536,929	-		DZA65_RS11880	0.47	-1.8
2,536,929	-		DZA65_RS11880	0.47	+0.3
2,536,947	+		DZA65_RS11880	0.50	+0.0
2,536,947	+		DZA65_RS11880	0.50	-0.1
2,536,948	-		DZA65_RS11880	0.50	+0.7
2,537,077	+		DZA65_RS11880	0.69	+0.3
2,537,077	+		DZA65_RS11880	0.69	+0.1
2,537,078	-		DZA65_RS11880	0.69	-1.1
2,537,141	+		DZA65_RS11880	0.79	+0.3
2,537,142	-		DZA65_RS11880	0.79	-0.7
2,537,142	-		DZA65_RS11880	0.79	-1.1
2,537,165	+		DZA65_RS11880	0.82	-0.0
2,537,178	+		DZA65_RS11880	0.84	-1.0
2,537,281	+				-0.3
2,537,281	+				+0.6
2,537,281	+				+0.4
2,537,282	-				+0.3
2,537,282	-				+0.3
2,537,285	+				+0.4
2,537,286	-				+0.1
2,537,286	-				+0.6
2,537,299	+				-0.1
2,537,317	-				+0.6
2,537,318	+				-0.1
2,537,319	-				-1.7
2,537,335	+				+1.0
2,537,336	-				-0.1
2,537,336	-				+1.3
2,537,336	-				-0.4
2,537,336	-				-1.3
2,537,338	-				-1.0
2,537,417	+				+0.5
2,537,501	+		DZA65_RS11885	0.12	-0.7
2,537,501	+		DZA65_RS11885	0.12	-1.9
2,537,501	+		DZA65_RS11885	0.12	-0.2
2,537,501	+		DZA65_RS11885	0.12	-0.3
2,537,501	+		DZA65_RS11885	0.12	-0.1
2,537,502	-		DZA65_RS11885	0.12	-0.1
2,537,543	-		DZA65_RS11885	0.15	-1.0
2,537,543	-		DZA65_RS11885	0.15	-0.9
2,537,543	-		DZA65_RS11885	0.15	-1.6
2,537,567	+		DZA65_RS11885	0.16	+1.3
2,537,567	+		DZA65_RS11885	0.16	+1.0
2,537,568	-		DZA65_RS11885	0.16	+0.6
2,537,568	-		DZA65_RS11885	0.16	-1.1
2,537,584	+		DZA65_RS11885	0.18	+0.6
2,537,584	+		DZA65_RS11885	0.18	-0.5
2,537,584	+		DZA65_RS11885	0.18	+0.6
2,537,584	+		DZA65_RS11885	0.18	+0.5
2,537,584	+		DZA65_RS11885	0.18	-0.3
2,537,585	-		DZA65_RS11885	0.18	+0.9
2,537,585	-		DZA65_RS11885	0.18	-2.7
2,537,588	+		DZA65_RS11885	0.18	-0.1
2,537,588	+		DZA65_RS11885	0.18	+1.1
2,537,588	+		DZA65_RS11885	0.18	+0.3
2,537,588	+		DZA65_RS11885	0.18	+0.5
2,537,589	-		DZA65_RS11885	0.18	-0.0
2,537,589	-		DZA65_RS11885	0.18	-1.0
2,537,589	-		DZA65_RS11885	0.18	+0.6
2,537,589	-		DZA65_RS11885	0.18	-0.8
2,537,593	+		DZA65_RS11885	0.18	-2.5
2,537,593	+		DZA65_RS11885	0.18	+0.3
2,537,678	+		DZA65_RS11885	0.24	-2.0
2,537,711	-		DZA65_RS11885	0.26	+1.4
2,537,721	+		DZA65_RS11885	0.27	-0.1
2,537,722	-		DZA65_RS11885	0.27	+0.7
2,537,722	-		DZA65_RS11885	0.27	-1.3
2,537,722	-		DZA65_RS11885	0.27	-0.9
2,537,722	-		DZA65_RS11885	0.27	-0.5
2,537,722	-		DZA65_RS11885	0.27	-0.1
2,537,722	-		DZA65_RS11885	0.27	+0.6
2,537,722	-		DZA65_RS11885	0.27	-1.5
2,537,722	-		DZA65_RS11885	0.27	-0.7
2,537,762	+		DZA65_RS11885	0.30	+0.2
2,537,797	+		DZA65_RS11885	0.32	-0.8
2,537,797	+		DZA65_RS11885	0.32	-0.0
2,537,798	-		DZA65_RS11885	0.32	+0.9
2,537,856	+		DZA65_RS11885	0.36	-0.1
2,537,941	-		DZA65_RS11885	0.42	-0.2
2,538,088	+		DZA65_RS11885	0.52	-2.4
2,538,089	-		DZA65_RS11885	0.52	+0.0
2,538,089	-		DZA65_RS11885	0.52	-0.1
2,538,093	+		DZA65_RS11885	0.52	+0.3
2,538,093	+		DZA65_RS11885	0.52	-1.7
2,538,116	+		DZA65_RS11885	0.54	-0.4
2,538,121	+		DZA65_RS11885	0.54	-1.7
2,538,121	+		DZA65_RS11885	0.54	-2.3
2,538,121	+		DZA65_RS11885	0.54	-0.5
2,538,121	+		DZA65_RS11885	0.54	+0.3
2,538,121	+		DZA65_RS11885	0.54	-1.3
2,538,121	+		DZA65_RS11885	0.54	-0.3
2,538,122	-		DZA65_RS11885	0.54	+0.3
2,538,122	-		DZA65_RS11885	0.54	-0.4
2,538,122	-		DZA65_RS11885	0.54	-1.2
2,538,122	-		DZA65_RS11885	0.54	+1.2
2,538,126	-		DZA65_RS11885	0.55	-2.1
2,538,205	+		DZA65_RS11885	0.60	-0.6
2,538,205	+		DZA65_RS11885	0.60	-0.7
2,538,206	-		DZA65_RS11885	0.60	+0.3
2,538,206	-		DZA65_RS11885	0.60	-2.9
2,538,284	+		DZA65_RS11885	0.65	-1.2
2,538,339	+				+1.9
2,538,340	-		DZA65_RS11885	0.69	-2.0
2,538,386	-		DZA65_RS11885	0.72	-0.7
2,538,386	-		DZA65_RS11885	0.72	-0.0
2,538,392	+		DZA65_RS11885	0.73	-0.6
2,538,439	-		DZA65_RS11885	0.76	-0.2
2,538,466	+		DZA65_RS11885	0.78	-0.1
2,538,466	+		DZA65_RS11885	0.78	-1.2
2,538,466	+		DZA65_RS11885	0.78	-0.8
2,538,484	+		DZA65_RS11885	0.79	-0.0
2,538,484	+		DZA65_RS11885	0.79	-0.9
2,538,485	-		DZA65_RS11885	0.79	-1.6
2,538,502	+		DZA65_RS11885	0.80	+0.4
2,538,502	+		DZA65_RS11885	0.80	-1.5
2,538,503	-		DZA65_RS11885	0.80	-0.9
2,538,503	-		DZA65_RS11885	0.80	-1.0
2,538,506	+		DZA65_RS11885	0.81	-0.0
2,538,507	-		DZA65_RS11885	0.81	-0.5
2,538,507	-		DZA65_RS11885	0.81	-1.7
2,538,642	+		DZA65_RS11885	0.90	-3.2
2,538,642	+		DZA65_RS11885	0.90	+0.5
2,538,642	+		DZA65_RS11885	0.90	+0.1
2,538,643	-		DZA65_RS11885	0.90	-2.3
2,538,696	-				+0.1
2,538,801	+				-1.5
2,538,802	-				-1.4
2,538,802	-				-0.4
2,538,804	+				-0.5
2,538,805	-				-2.7
2,538,805	-				-2.5
2,538,813	-				+0.9
2,538,820	-				-0.9
2,538,820	-				-1.7
2,538,919	+				+1.7
2,538,920	-				-1.7
2,538,920	-				-0.3
2,538,949	+				+0.3
2,538,949	+				+0.7
2,538,950	-				+0.1
2,538,950	-				-0.2
2,538,950	-				-0.9
2,538,951	+				+0.4
2,538,952	-				-0.0
2,538,952	-				+1.9
2,538,952	-				+1.0
2,538,952	-				-0.9
2,538,955	+				+0.5
2,538,956	-				-0.5
2,539,091	+				+0.3
2,539,091	+				+1.9
2,539,197	+		DZA65_RS11890	0.19	-3.0
2,539,197	+		DZA65_RS11890	0.19	-0.0
2,539,198	-		DZA65_RS11890	0.19	+0.6
2,539,198	-		DZA65_RS11890	0.19	+1.3
2,539,371	+		DZA65_RS11890	0.34	+1.4
2,539,371	+		DZA65_RS11890	0.34	-0.7
2,539,378	+		DZA65_RS11890	0.35	-1.3
2,539,378	+		DZA65_RS11890	0.35	+0.3
2,539,378	+		DZA65_RS11890	0.35	-1.3
2,539,378	+		DZA65_RS11890	0.35	+0.9
2,539,378	+		DZA65_RS11890	0.35	+0.2
2,539,378	+		DZA65_RS11890	0.35	-0.7
2,539,378	+		DZA65_RS11890	0.35	+0.1
2,539,379	-		DZA65_RS11890	0.35	+0.3
2,539,379	-		DZA65_RS11890	0.35	-0.5
2,539,379	-		DZA65_RS11890	0.35	-0.6
2,539,379	-		DZA65_RS11890	0.35	-2.5
2,539,379	-		DZA65_RS11890	0.35	-0.7
2,539,379	-		DZA65_RS11890	0.35	-0.6
2,539,379	-		DZA65_RS11890	0.35	+0.9
2,539,379	-		DZA65_RS11890	0.35	-0.3
2,539,382	+		DZA65_RS11890	0.35	+0.7
2,539,383	-		DZA65_RS11890	0.35	-0.0
2,539,524	+		DZA65_RS11890	0.48	-1.6
2,539,524	+		DZA65_RS11890	0.48	+1.0
2,539,524	+		DZA65_RS11890	0.48	+0.9
2,539,524	+		DZA65_RS11890	0.48	+0.6
2,539,525	-		DZA65_RS11890	0.48	+0.3
2,539,525	-		DZA65_RS11890	0.48	-0.2
2,539,525	-		DZA65_RS11890	0.48	+0.9
2,539,526	+		DZA65_RS11890	0.48	-0.3
2,539,527	-		DZA65_RS11890	0.48	+0.1
2,539,527	-		DZA65_RS11890	0.48	-1.7
2,539,527	-		DZA65_RS11890	0.48	+0.0
2,539,527	-				+1.9
2,539,555	-		DZA65_RS11890	0.51	+0.2
2,539,578	+		DZA65_RS11890	0.53	-1.5
2,539,579	-		DZA65_RS11890	0.53	-2.0
2,539,579	-		DZA65_RS11890	0.53	+0.3
2,539,579	-		DZA65_RS11890	0.53	+0.9
2,539,635	+		DZA65_RS11890	0.58	+2.2
2,539,635	+		DZA65_RS11890	0.58	-0.3
2,539,635	+		DZA65_RS11890	0.58	-1.3
2,539,635	+		DZA65_RS11890	0.58	+1.3
2,539,635	+		DZA65_RS11890	0.58	-1.6
2,539,635	+		DZA65_RS11890	0.58	-0.7
2,539,636	-		DZA65_RS11890	0.58	-1.5
2,539,636	-		DZA65_RS11890	0.58	-0.1
2,539,636	-		DZA65_RS11890	0.58	-0.7
2,539,636	-		DZA65_RS11890	0.58	+0.1
2,539,636	-		DZA65_RS11890	0.58	-0.7
2,539,636	-		DZA65_RS11890	0.58	+0.3
2,539,711	+		DZA65_RS11890	0.65	-0.1
2,539,711	+		DZA65_RS11890	0.65	+1.1
2,539,711	+		DZA65_RS11890	0.65	+0.0
2,539,711	+		DZA65_RS11890	0.65	-0.1
2,539,712	-		DZA65_RS11890	0.65	+0.7
2,539,712	-		DZA65_RS11890	0.65	-0.5
2,539,735	+		DZA65_RS11890	0.67	-3.0
2,539,735	+		DZA65_RS11890	0.67	-1.0
2,539,736	-		DZA65_RS11890	0.67	-0.5