Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11590

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,472,971	+		DZA65_RS11580	0.53	-0.6
2,472,972	-		DZA65_RS11580	0.54	+0.5
2,472,972	-		DZA65_RS11580	0.54	+1.9
2,473,050	+		DZA65_RS11580	0.82	+2.6
2,473,050	+		DZA65_RS11580	0.82	+1.7
2,473,051	-		DZA65_RS11580	0.82	-1.3
2,473,056	+		DZA65_RS11580	0.84	+0.3
2,473,056	+		DZA65_RS11580	0.84	+0.0
2,473,056	+		DZA65_RS11580	0.84	+0.3
2,473,056	+		DZA65_RS11580	0.84	+0.1
2,473,056	+		DZA65_RS11580	0.84	+1.3
2,473,057	-		DZA65_RS11580	0.84	+1.1
2,473,057	-		DZA65_RS11580	0.84	-0.8
2,473,057	-		DZA65_RS11580	0.84	+1.1
2,473,057	-		DZA65_RS11580	0.84	+0.8
2,473,095	+				+0.3
2,473,095	+				+0.3
2,473,096	-				-0.4
2,473,096	-				+0.8
2,473,096	-				+0.4
2,473,096	-				-0.8
2,473,096	-				-0.1
2,473,096	-				+1.7
2,473,096	-				-1.2
2,473,096	-				-1.5
2,473,138	+				-0.9
2,473,152	+				-1.0
2,473,152	+				+0.5
2,473,152	+				+0.6
2,473,152	+				-0.8
2,473,153	-				+0.7
2,473,153	-				-0.7
2,473,153	-				-0.7
2,473,153	-				+0.3
2,473,153	-				-0.1
2,473,153	-				+0.6
2,473,153	-				+0.0
2,473,154	+				+0.9
2,473,154	+				-0.1
2,473,154	+				+0.3
2,473,155	-				-2.2
2,473,155	-				-1.7
2,473,155	-				+0.6
2,473,155	-				-0.6
2,473,155	-				-0.3
2,473,179	-				+0.3
2,473,179	-				+0.5
2,473,188	+				+0.9
2,473,189	-				+1.2
2,473,189	-				-1.0
2,473,195	+				+0.1
2,473,208	+				+0.7
2,473,209	-				-0.8
2,473,209	-				-0.6
2,473,274	+				-0.4
2,473,274	+				+0.2
2,473,274	+				-0.7
2,473,274	+				+1.3
2,473,274	+				-0.2
2,473,275	-				+0.3
2,473,316	+				+1.5
2,473,421	+		DZA65_RS11585	0.27	+0.3
2,473,421	+		DZA65_RS11585	0.27	-0.3
2,473,498	+		DZA65_RS11585	0.38	-0.7
2,473,499	-		DZA65_RS11585	0.38	+1.3
2,473,502	+		DZA65_RS11585	0.38	+1.2
2,473,502	+		DZA65_RS11585	0.38	+1.6
2,473,503	-		DZA65_RS11585	0.39	-0.8
2,473,526	-		DZA65_RS11585	0.42	-1.1
2,473,528	+		DZA65_RS11585	0.42	-0.7
2,473,529	-		DZA65_RS11585	0.42	+0.7
2,473,596	-		DZA65_RS11585	0.52	+0.6
2,473,662	-		DZA65_RS11585	0.61	-0.4
2,473,718	+		DZA65_RS11585	0.70	+0.1
2,473,718	+		DZA65_RS11585	0.70	-0.5
2,473,718	+		DZA65_RS11585	0.70	-0.1
2,473,718	+		DZA65_RS11585	0.70	-0.2
2,473,718	+		DZA65_RS11585	0.70	-0.4
2,473,719	-		DZA65_RS11585	0.70	-0.1
2,473,719	-		DZA65_RS11585	0.70	+1.7
2,473,723	-		DZA65_RS11585	0.70	-1.3
2,473,857	+		DZA65_RS11585	0.90	-1.7
2,473,912	+				-0.2
2,473,912	+				+0.0
2,473,912	+				-0.0
2,473,913	-				-1.9
2,473,913	-				+0.3
2,473,913	-				-0.4
2,473,913	-				+0.6
2,473,913	-				-0.6
2,473,921	+				-0.6
2,473,921	+				-0.3
2,473,926	+				-0.3
2,473,927	-				-0.0
2,473,944	+				-1.7
2,473,945	-				+1.9
2,473,945	-				-0.1
2,473,948	+				-1.7
2,473,948	+				-1.6
2,473,949	-				-0.8
2,473,949	-				-2.0
2,473,969	+				+0.6
2,473,969	+				-0.5
2,473,970	-				-0.7
2,473,978	+				+0.3
2,473,979	-				-0.5
2,474,028	+				-3.3
2,474,041	+		DZA65_RS11590	0.11	+0.1
2,474,120	+		DZA65_RS11590	0.21	+0.3
2,474,121	-		DZA65_RS11590	0.21	+1.2
2,474,121	-		DZA65_RS11590	0.21	-0.1
2,474,172	+		DZA65_RS11590	0.27	-1.9
2,474,173	-		DZA65_RS11590	0.28	-0.4
2,474,173	-		DZA65_RS11590	0.28	-2.5
2,474,179	+		DZA65_RS11590	0.28	+0.5
2,474,180	-				+1.1
2,474,198	+		DZA65_RS11590	0.31	-1.0
2,474,199	-		DZA65_RS11590	0.31	-0.5
2,474,199	-		DZA65_RS11590	0.31	-1.5
2,474,199	-		DZA65_RS11590	0.31	-2.2
2,474,199	-		DZA65_RS11590	0.31	-1.0
2,474,199	-		DZA65_RS11590	0.31	-0.3
2,474,199	-		DZA65_RS11590	0.31	-0.9
2,474,201	-		DZA65_RS11590	0.31	-2.7
2,474,201	-		DZA65_RS11590	0.31	-0.8
2,474,201	-		DZA65_RS11590	0.31	-0.7
2,474,228	-		DZA65_RS11590	0.34	-0.3
2,474,348	+		DZA65_RS11590	0.49	-1.7
2,474,348	+		DZA65_RS11590	0.49	-2.3
2,474,349	-		DZA65_RS11590	0.49	-0.7
2,474,467	+		DZA65_RS11590	0.64	-0.5
2,474,495	+		DZA65_RS11590	0.67	-3.0
2,474,495	+				+1.0
2,474,496	-		DZA65_RS11590	0.67	-0.2
2,474,663	+		DZA65_RS11590	0.88	-0.9
2,474,663	+		DZA65_RS11590	0.88	+0.8
2,474,663	+		DZA65_RS11590	0.88	-1.6
2,474,664	-		DZA65_RS11590	0.88	-0.6
2,474,664	-		DZA65_RS11590	0.88	-2.7
2,475,000	+		DZA65_RS11595	0.83	-0.4
2,475,000	+		DZA65_RS11595	0.83	+0.3
2,475,000	+		DZA65_RS11595	0.83	-0.1
2,475,001	-		DZA65_RS11595	0.84	+1.3
2,475,044	+				+1.0
2,475,044	+				+0.9
2,475,044	+				-0.1
2,475,045	-				+1.9
2,475,045	-				+1.1
2,475,045	-				-0.7
2,475,124	-				-2.3
2,475,331	+		DZA65_RS11600	0.19	-0.6
2,475,331	+		DZA65_RS11600	0.19	-0.2
2,475,331	+		DZA65_RS11600	0.19	+0.5
2,475,331	+		DZA65_RS11600	0.19	-1.2
2,475,331	+		DZA65_RS11600	0.19	-0.8
2,475,331	+				+1.6
2,475,331	+		DZA65_RS11600	0.19	-1.0
2,475,332	-		DZA65_RS11600	0.19	-1.0
2,475,332	-		DZA65_RS11600	0.19	-1.1
2,475,332	-		DZA65_RS11600	0.19	+0.3
2,475,332	-		DZA65_RS11600	0.19	-1.4
2,475,332	-		DZA65_RS11600	0.19	-0.5
2,475,332	-		DZA65_RS11600	0.19	+0.7
2,475,332	-		DZA65_RS11600	0.19	+0.2
2,475,343	-		DZA65_RS11600	0.20	-0.1
2,475,562	+		DZA65_RS11600	0.39	-0.8
2,475,632	+		DZA65_RS11600	0.46	-1.1
2,475,632	+		DZA65_RS11600	0.46	+0.0
2,475,632	+				-0.7
2,475,632	+		DZA65_RS11600	0.46	+1.5
2,475,632	+		DZA65_RS11600	0.46	+0.7
2,475,633	-		DZA65_RS11600	0.46	+0.1
2,475,633	-		DZA65_RS11600	0.46	-1.3
2,475,633	-		DZA65_RS11600	0.46	-0.5
2,475,633	-		DZA65_RS11600	0.46	-0.7