Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11240

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,382,513	+		DZA65_RS11235	0.31	-2.5
2,382,514	-		DZA65_RS11235	0.32	+0.1
2,382,514	-		DZA65_RS11235	0.32	+1.3
2,382,533	+		DZA65_RS11235	0.33	+0.1
2,382,533	+		DZA65_RS11235	0.33	-0.7
2,382,534	-		DZA65_RS11235	0.33	-0.7
2,382,556	-		DZA65_RS11235	0.35	+0.4
2,382,556	-		DZA65_RS11235	0.35	+0.2
2,382,556	-		DZA65_RS11235	0.35	+0.3
2,382,556	-		DZA65_RS11235	0.35	-1.1
2,382,556	-		DZA65_RS11235	0.35	+0.1
2,382,567	+		DZA65_RS11235	0.35	-2.0
2,382,567	+		DZA65_RS11235	0.35	-1.1
2,382,567	+		DZA65_RS11235	0.35	+1.0
2,382,567	+		DZA65_RS11235	0.35	+0.1
2,382,568	-		DZA65_RS11235	0.35	+0.5
2,382,568	-		DZA65_RS11235	0.35	-0.2
2,382,568	-		DZA65_RS11235	0.35	-0.1
2,382,568	-		DZA65_RS11235	0.35	-1.7
2,382,568	-		DZA65_RS11235	0.35	+0.8
2,382,568	-		DZA65_RS11235	0.35	-0.1
2,382,568	-		DZA65_RS11235	0.35	+0.5
2,382,568	-		DZA65_RS11235	0.35	+1.0
2,382,568	-		DZA65_RS11235	0.35	+0.3
2,382,568	-		DZA65_RS11235	0.35	+1.3
2,382,573	+		DZA65_RS11235	0.36	-0.4
2,382,573	+		DZA65_RS11235	0.36	+0.6
2,382,573	+		DZA65_RS11235	0.36	+0.3
2,382,573	+		DZA65_RS11235	0.36	-2.2
2,382,573	+		DZA65_RS11235	0.36	+0.3
2,382,573	+		DZA65_RS11235	0.36	+0.2
2,382,574	-		DZA65_RS11235	0.36	+0.2
2,382,574	-		DZA65_RS11235	0.36	+1.0
2,382,592	+		DZA65_RS11235	0.37	-1.0
2,382,643	+		DZA65_RS11235	0.41	+0.3
2,382,644	-		DZA65_RS11235	0.41	+0.6
2,382,666	+		DZA65_RS11235	0.42	-1.4
2,382,666	+		DZA65_RS11235	0.42	+0.3
2,382,666	+		DZA65_RS11235	0.42	-0.3
2,382,820	+		DZA65_RS11235	0.53	+1.6
2,382,820	+		DZA65_RS11235	0.53	-0.8
2,382,820	+		DZA65_RS11235	0.53	-1.4
2,382,821	-		DZA65_RS11235	0.53	+0.7
2,382,821	-		DZA65_RS11235	0.53	+0.3
2,382,821	-		DZA65_RS11235	0.53	-2.0
2,382,821	-		DZA65_RS11235	0.53	+1.9
2,382,821	-		DZA65_RS11235	0.53	-0.3
2,382,853	+		DZA65_RS11235	0.56	-0.7
2,382,853	+		DZA65_RS11235	0.56	-0.1
2,382,853	+		DZA65_RS11235	0.56	+1.1
2,382,854	-				+1.6
2,382,854	-		DZA65_RS11235	0.56	-0.4
2,382,854	-		DZA65_RS11235	0.56	+0.7
2,382,854	-		DZA65_RS11235	0.56	+0.9
2,382,854	-		DZA65_RS11235	0.56	-0.4
2,382,854	-		DZA65_RS11235	0.56	+0.1
2,382,945	-		DZA65_RS11235	0.62	-0.3
2,383,045	-		DZA65_RS11235	0.69	+0.4
2,383,111	+		DZA65_RS11235	0.74	+2.1
2,383,112	-		DZA65_RS11235	0.74	+0.5
2,383,122	+		DZA65_RS11235	0.75	+0.6
2,383,141	-		DZA65_RS11235	0.76	+0.3
2,383,141	-		DZA65_RS11235	0.76	+0.0
2,383,175	+		DZA65_RS11235	0.79	-0.1
2,383,176	-		DZA65_RS11235	0.79	+0.3
2,383,176	-		DZA65_RS11235	0.79	+0.5
2,383,176	-		DZA65_RS11235	0.79	-0.3
2,383,176	-		DZA65_RS11235	0.79	+0.4
2,383,179	+		DZA65_RS11235	0.79	+0.1
2,383,179	+		DZA65_RS11235	0.79	+0.5
2,383,179	+		DZA65_RS11235	0.79	-0.9
2,383,179	+		DZA65_RS11235	0.79	-0.4
2,383,179	+		DZA65_RS11235	0.79	+0.5
2,383,179	+		DZA65_RS11235	0.79	-0.6
2,383,179	+		DZA65_RS11235	0.79	+0.3
2,383,179	+		DZA65_RS11235	0.79	-1.7
2,383,179	+		DZA65_RS11235	0.79	-0.7
2,383,179	+		DZA65_RS11235	0.79	+0.6
2,383,179	+		DZA65_RS11235	0.79	-0.9
2,383,180	-		DZA65_RS11235	0.79	+1.7
2,383,180	-		DZA65_RS11235	0.79	+1.3
2,383,180	-		DZA65_RS11235	0.79	+0.3
2,383,180	-		DZA65_RS11235	0.79	-0.3
2,383,180	-		DZA65_RS11235	0.79	+1.9
2,383,180	-		DZA65_RS11235	0.79	+0.6
2,383,180	-		DZA65_RS11235	0.79	-0.1
2,383,180	-		DZA65_RS11235	0.79	+0.2
2,383,180	-		DZA65_RS11235	0.79	-0.6
2,383,180	-		DZA65_RS11235	0.79	-0.2
2,383,180	-		DZA65_RS11235	0.79	-0.3
2,383,184	-		DZA65_RS11235	0.79	-1.3
2,383,207	+		DZA65_RS11235	0.81	+0.6
2,383,248	+		DZA65_RS11235	0.84	-0.3
2,383,248	+		DZA65_RS11235	0.84	-0.7
2,383,248	+		DZA65_RS11235	0.84	+1.0
2,383,248	+		DZA65_RS11235	0.84	-0.6
2,383,249	-		DZA65_RS11235	0.84	+1.1
2,383,249	-		DZA65_RS11235	0.84	+0.3
2,383,249	-		DZA65_RS11235	0.84	+0.0
2,383,260	+		DZA65_RS11235	0.85	-1.5
2,383,260	+		DZA65_RS11235	0.85	+0.3
2,383,260	+		DZA65_RS11235	0.85	-1.3
2,383,260	+		DZA65_RS11235	0.85	-0.4
2,383,261	-		DZA65_RS11235	0.85	+0.3
2,383,266	+		DZA65_RS11235	0.85	-0.4
2,383,267	-		DZA65_RS11235	0.85	+0.0
2,383,267	-		DZA65_RS11235	0.85	-0.1
2,383,267	-		DZA65_RS11235	0.85	+0.5
2,383,267	-		DZA65_RS11235	0.85	-3.2
2,383,454	+				+2.1
2,383,454	+				+0.7
2,383,455	-				+0.7
2,383,455	-				+0.1
2,383,455	-				+0.3
2,383,455	-				+0.8
2,383,455	-				-2.0
2,383,458	-				+1.1
2,383,489	-				-2.3
2,383,532	-				+1.1
2,383,540	-				-0.3
2,383,540	-				+2.3
2,383,540	-				+0.8
2,383,540	-				-1.7
2,383,597	+				+0.1
2,383,656	+		DZA65_RS11240	0.13	-0.4
2,383,656	+		DZA65_RS11240	0.13	+0.0
2,383,656	+		DZA65_RS11240	0.13	+1.5
2,383,657	-		DZA65_RS11240	0.13	+0.1
2,383,659	+		DZA65_RS11240	0.13	+0.3
2,383,659	+		DZA65_RS11240	0.13	+0.8
2,383,744	+		DZA65_RS11240	0.20	-0.0
2,383,934	+		DZA65_RS11240	0.34	-0.7
2,383,934	+		DZA65_RS11240	0.34	-0.6
2,383,934	+		DZA65_RS11240	0.34	-0.3
2,383,934	+		DZA65_RS11240	0.34	+0.7
2,383,934	+		DZA65_RS11240	0.34	+0.1
2,383,935	-		DZA65_RS11240	0.34	+0.5
2,383,935	-		DZA65_RS11240	0.34	+1.0
2,383,935	-		DZA65_RS11240	0.34	+3.3
2,384,038	-		DZA65_RS11240	0.42	-0.9
2,384,063	+		DZA65_RS11240	0.44	-1.1
2,384,064	-		DZA65_RS11240	0.44	+0.6
2,384,080	+		DZA65_RS11240	0.46	-1.1
2,384,081	-		DZA65_RS11240	0.46	-1.0
2,384,181	+		DZA65_RS11240	0.53	+2.1
2,384,181	+		DZA65_RS11240	0.53	-1.1
2,384,181	+		DZA65_RS11240	0.53	-1.4
2,384,181	+		DZA65_RS11240	0.53	+0.1
2,384,181	+		DZA65_RS11240	0.53	+0.1
2,384,181	+		DZA65_RS11240	0.53	-0.2
2,384,181	+		DZA65_RS11240	0.53	+0.6
2,384,181	+		DZA65_RS11240	0.53	+0.3
2,384,181	+				+2.1
2,384,181	+		DZA65_RS11240	0.53	+0.3
2,384,182	-		DZA65_RS11240	0.54	-1.0
2,384,182	-		DZA65_RS11240	0.54	+0.2
2,384,182	-		DZA65_RS11240	0.54	-0.1
2,384,182	-		DZA65_RS11240	0.54	+0.9
2,384,182	-		DZA65_RS11240	0.54	+0.3
2,384,182	-		DZA65_RS11240	0.54	-0.2
2,384,182	-		DZA65_RS11240	0.54	-0.9
2,384,182	-		DZA65_RS11240	0.54	+0.3
2,384,182	-		DZA65_RS11240	0.54	+0.3
2,384,182	-		DZA65_RS11240	0.54	+0.5
2,384,182	-		DZA65_RS11240	0.54	+0.3
2,384,185	+		DZA65_RS11240	0.54	-2.7
2,384,185	+		DZA65_RS11240	0.54	+0.9
2,384,186	-		DZA65_RS11240	0.54	+1.9
2,384,354	+		DZA65_RS11240	0.67	-1.1
2,384,354	+		DZA65_RS11240	0.67	+1.3
2,384,354	+		DZA65_RS11240	0.67	+0.3
2,384,354	+		DZA65_RS11240	0.67	-0.1
2,384,354	+		DZA65_RS11240	0.67	-0.7
2,384,354	+		DZA65_RS11240	0.67	+0.8
2,384,354	+		DZA65_RS11240	0.67	-1.3
2,384,355	-		DZA65_RS11240	0.67	+0.7
2,384,355	-		DZA65_RS11240	0.67	-0.9
2,384,355	-		DZA65_RS11240	0.67	+1.2
2,384,355	-		DZA65_RS11240	0.67	+0.5
2,384,490	+		DZA65_RS11240	0.77	+0.7
2,384,490	+		DZA65_RS11240	0.77	+1.0
2,384,490	+		DZA65_RS11240	0.77	+1.1
2,384,491	-		DZA65_RS11240	0.77	-1.0
2,384,491	-		DZA65_RS11240	0.77	+0.8
2,384,816	+				+0.4
2,384,816	+				-0.1
2,384,816	+				+0.3
2,384,817	-				-0.7
2,384,817	-				-0.7
2,384,817	-				+1.6
2,384,817	-				+0.6
2,384,818	+				-0.6
2,384,819	-				-0.9
2,384,819	-				-0.3
2,384,819	-				+0.6
2,384,824	+				-0.1
2,385,130	+		DZA65_RS11245	0.16	+0.0
2,385,130	+		DZA65_RS11245	0.16	+0.3
2,385,130	+		DZA65_RS11245	0.16	-1.0
2,385,131	-		DZA65_RS11245	0.16	+2.5
2,385,131	-		DZA65_RS11245	0.16	+0.3
2,385,131	-		DZA65_RS11245	0.16	-1.3
2,385,131	-		DZA65_RS11245	0.16	-0.3
2,385,208	+		DZA65_RS11245	0.21	-0.7
2,385,324	-		DZA65_RS11245	0.28	+0.7
2,385,349	+		DZA65_RS11245	0.29	+0.9
2,385,350	-		DZA65_RS11245	0.29	-2.3
2,385,528	-		DZA65_RS11245	0.39	-0.7