Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10425

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,205,832	-		DZA65_RS10420	0.67	+0.9
2,205,833	+		DZA65_RS10420	0.67	-2.3
2,205,833	+		DZA65_RS10420	0.67	-0.1
2,205,982	+		DZA65_RS10420	0.72	+0.3
2,205,983	-		DZA65_RS10420	0.72	-1.3
2,206,011	+		DZA65_RS10420	0.73	-1.0
2,206,080	-		DZA65_RS10420	0.75	+0.5
2,206,096	-		DZA65_RS10420	0.76	+0.5
2,206,096	-		DZA65_RS10420	0.76	+0.8
2,206,111	+		DZA65_RS10420	0.76	+1.3
2,206,111	+		DZA65_RS10420	0.76	-1.0
2,206,111	+		DZA65_RS10420	0.76	+0.7
2,206,112	-		DZA65_RS10420	0.76	-0.8
2,206,112	-		DZA65_RS10420	0.76	+0.2
2,206,138	+		DZA65_RS10420	0.77	+0.6
2,206,138	+		DZA65_RS10420	0.77	-2.5
2,206,139	-		DZA65_RS10420	0.77	+0.6
2,206,223	+		DZA65_RS10420	0.80	+1.1
2,206,223	+		DZA65_RS10420	0.80	+0.1
2,206,223	+		DZA65_RS10420	0.80	+0.1
2,206,223	+		DZA65_RS10420	0.80	-0.3
2,206,223	+		DZA65_RS10420	0.80	-1.7
2,206,223	+		DZA65_RS10420	0.80	-0.7
2,206,223	+		DZA65_RS10420	0.80	+0.1
2,206,223	+		DZA65_RS10420	0.80	-0.3
2,206,223	+		DZA65_RS10420	0.80	-3.0
2,206,223	+		DZA65_RS10420	0.80	-0.2
2,206,223	+		DZA65_RS10420	0.80	-0.7
2,206,223	+		DZA65_RS10420	0.80	+0.7
2,206,223	+		DZA65_RS10420	0.80	-0.8
2,206,223	+		DZA65_RS10420	0.80	+0.3
2,206,223	+		DZA65_RS10420	0.80	+0.6
2,206,223	+		DZA65_RS10420	0.80	+0.0
2,206,224	-		DZA65_RS10420	0.80	+1.5
2,206,224	-		DZA65_RS10420	0.80	-0.4
2,206,224	-		DZA65_RS10420	0.80	-1.3
2,206,224	-		DZA65_RS10420	0.80	-0.7
2,206,224	-		DZA65_RS10420	0.80	+1.7
2,206,224	-		DZA65_RS10420	0.80	+1.5
2,206,224	-		DZA65_RS10420	0.80	-0.5
2,206,224	-		DZA65_RS10420	0.80	+0.5
2,206,224	-		DZA65_RS10420	0.80	+0.7
2,206,224	-		DZA65_RS10420	0.80	-0.9
2,206,224	-		DZA65_RS10420	0.80	+0.1
2,206,224	-		DZA65_RS10420	0.80	+0.2
2,206,224	-		DZA65_RS10420	0.80	-0.3
2,206,224	-				+1.3
2,206,224	-		DZA65_RS10420	0.80	-0.0
2,206,224	-		DZA65_RS10420	0.80	-0.2
2,206,227	+		DZA65_RS10420	0.80	-0.0
2,206,227	+		DZA65_RS10420	0.80	-1.0
2,206,228	-				+0.3
2,206,228	-		DZA65_RS10420	0.80	-1.7
2,206,228	-		DZA65_RS10420	0.80	+0.7
2,206,228	-		DZA65_RS10420	0.80	+0.1
2,206,228	-		DZA65_RS10420	0.80	+1.3
2,206,264	-		DZA65_RS10420	0.82	+0.3
2,206,264	-		DZA65_RS10420	0.82	+0.3
2,206,264	-		DZA65_RS10420	0.82	+0.5
2,206,326	+		DZA65_RS10420	0.84	-0.0
2,206,326	+		DZA65_RS10420	0.84	-0.7
2,206,326	+		DZA65_RS10420	0.84	+1.0
2,206,326	+		DZA65_RS10420	0.84	+0.8
2,206,326	+		DZA65_RS10420	0.84	+0.4
2,206,326	+		DZA65_RS10420	0.84	+1.0
2,206,326	+		DZA65_RS10420	0.84	-0.7
2,206,327	-		DZA65_RS10420	0.84	+0.6
2,206,327	-		DZA65_RS10420	0.84	+0.1
2,206,331	+		DZA65_RS10420	0.84	+0.0
2,206,370	+		DZA65_RS10420	0.85	+0.9
2,206,370	+		DZA65_RS10420	0.85	-1.2
2,206,370	+		DZA65_RS10420	0.85	+1.3
2,206,370	+		DZA65_RS10420	0.85	+0.8
2,206,370	+		DZA65_RS10420	0.85	+0.6
2,206,370	+		DZA65_RS10420	0.85	+0.7
2,206,370	+		DZA65_RS10420	0.85	+0.3
2,206,370	+		DZA65_RS10420	0.85	+0.6
2,206,370	+		DZA65_RS10420	0.85	-0.7
2,206,370	+		DZA65_RS10420	0.85	+1.2
2,206,370	+		DZA65_RS10420	0.85	-0.3
2,206,371	-		DZA65_RS10420	0.85	-2.3
2,206,371	-		DZA65_RS10420	0.85	-3.7
2,206,371	-		DZA65_RS10420	0.85	-0.6
2,206,371	-		DZA65_RS10420	0.85	-0.4
2,206,371	-		DZA65_RS10420	0.85	-0.1
2,206,371	-		DZA65_RS10420	0.85	-0.9
2,206,371	-		DZA65_RS10420	0.85	-0.1
2,206,371	-		DZA65_RS10420	0.85	-0.7
2,206,371	-		DZA65_RS10420	0.85	+0.4
2,206,371	-		DZA65_RS10420	0.85	-1.4
2,206,371	-		DZA65_RS10420	0.85	+1.1
2,206,371	-		DZA65_RS10420	0.85	-0.2
2,206,371	-		DZA65_RS10420	0.85	+0.0
2,206,371	-		DZA65_RS10420	0.85	+2.5
2,206,429	+		DZA65_RS10420	0.87	+0.8
2,206,429	+		DZA65_RS10420	0.87	-0.4
2,206,429	+		DZA65_RS10420	0.87	-0.5
2,206,429	+		DZA65_RS10420	0.87	+0.8
2,206,429	+				-0.7
2,206,429	+		DZA65_RS10420	0.87	-1.0
2,206,429	+		DZA65_RS10420	0.87	-1.7
2,206,430	-		DZA65_RS10420	0.87	+0.6
2,206,430	-		DZA65_RS10420	0.87	-2.1
2,206,529	+				-0.7
2,206,529	+				+0.1
2,206,530	-				-0.3
2,206,530	-				-1.7
2,206,530	-				+0.9
2,206,530	-				-0.4
2,206,693	+				+0.5
2,206,763	-				+0.2
2,206,763	-				+0.3
2,206,794	+				+0.6
2,206,794	+				-0.2
2,206,794	+				-1.3
2,206,794	+				-0.0
2,206,794	+				-1.0
2,206,794	+				-0.3
2,206,794	+				+0.1
2,206,795	-				+1.1
2,206,795	-				-1.1
2,206,795	-				+2.0
2,206,795	-				-0.7
2,206,795	-				+0.1
2,206,795	-				+0.6
2,206,795	-				+0.3
2,206,795	-				-1.5
2,206,795	-				-1.7
2,206,795	-				+0.8
2,206,966	-				+1.1
2,207,308	-		DZA65_RS10425	0.15	+0.3
2,207,379	+		DZA65_RS10425	0.17	-0.9
2,207,379	+		DZA65_RS10425	0.17	+0.8
2,207,390	-		DZA65_RS10425	0.17	-0.8
2,207,390	-		DZA65_RS10425	0.17	+1.3
2,207,422	+		DZA65_RS10425	0.18	+2.6
2,207,422	+		DZA65_RS10425	0.18	-1.2
2,207,533	+		DZA65_RS10425	0.22	+0.9
2,207,597	+		DZA65_RS10425	0.23	+0.7
2,207,618	+		DZA65_RS10425	0.24	+0.0
2,207,618	+		DZA65_RS10425	0.24	+0.3
2,208,174	-		DZA65_RS10425	0.40	+1.2
2,208,301	+		DZA65_RS10425	0.44	+1.4
2,208,301	+		DZA65_RS10425	0.44	-1.3
2,208,847	+		DZA65_RS10425	0.60	+0.1
2,208,848	-		DZA65_RS10425	0.60	+0.3
2,208,848	-		DZA65_RS10425	0.60	+0.1
2,208,848	-		DZA65_RS10425	0.60	-0.2
2,208,884	+		DZA65_RS10425	0.61	+1.1
2,208,939	+		DZA65_RS10425	0.63	-0.2
2,208,939	+		DZA65_RS10425	0.63	+1.2
2,208,939	+		DZA65_RS10425	0.63	+0.1
2,208,939	+		DZA65_RS10425	0.63	-0.1
2,208,939	+		DZA65_RS10425	0.63	+1.0
2,208,939	+		DZA65_RS10425	0.63	-0.3
2,208,940	-		DZA65_RS10425	0.63	+2.3
2,208,940	-		DZA65_RS10425	0.63	+0.2
2,208,940	-		DZA65_RS10425	0.63	+1.2
2,208,940	-		DZA65_RS10425	0.63	-2.0
2,208,940	-		DZA65_RS10425	0.63	+0.1
2,208,940	-		DZA65_RS10425	0.63	-0.9
2,208,940	-		DZA65_RS10425	0.63	+0.6
2,208,940	-		DZA65_RS10425	0.63	+1.2
2,208,940	-		DZA65_RS10425	0.63	+0.3
2,209,343	+		DZA65_RS10425	0.75	+1.3
2,209,359	-		DZA65_RS10425	0.75	+0.5
2,209,376	+		DZA65_RS10425	0.75	+0.5
2,209,377	-		DZA65_RS10425	0.75	-0.1
2,209,377	-		DZA65_RS10425	0.75	-0.2
2,209,756	+		DZA65_RS10425	0.87	-1.7
2,209,756	+		DZA65_RS10425	0.87	+0.5
2,209,757	-		DZA65_RS10425	0.87	+0.2
2,209,757	-		DZA65_RS10425	0.87	+1.3
2,209,840	+		DZA65_RS10425	0.89	+0.6
2,209,841	-		DZA65_RS10425	0.89	+0.9
2,209,849	+		DZA65_RS10425	0.89	-0.7
2,209,849	+		DZA65_RS10425	0.89	-0.1
2,209,967	+				-2.0
2,209,967	+				+0.8
2,209,967	+				+0.1
2,209,968	-				-0.1
2,210,019	-				-0.4
2,210,155	+				-0.1
2,210,155	+				+0.6
2,210,155	+				-0.7
2,210,156	-				-0.3
2,210,194	+				-1.0
2,210,194	+				-0.1
2,210,194	+				+0.4
2,210,194	+				+0.9
2,210,194	+				-0.9
2,210,195	-				+0.8
2,210,195	-				-0.7
2,210,195	-				-0.7
2,210,195	-				-0.7
2,210,195	-				-0.3
2,210,224	+				+0.2
2,210,224	+				-1.4
2,210,224	+				+0.3
2,210,228	+				-0.6
2,210,229	-				-0.8
2,210,229	-				+1.3
2,210,276	+				-0.6
2,210,276	+				+1.6
2,210,277	-				+0.3
2,210,277	-				-0.3
2,210,277	-				+0.5
2,210,334	+				+0.7
2,210,334	+				+0.5
2,210,334	+				-0.1
2,210,334	+				+1.7
2,210,334	+				-1.1
2,210,335	-				-1.2
2,210,335	-				-0.3
2,210,336	+				+0.1
2,210,337	-				-0.1
2,210,367	+				+0.3
2,210,368	-				+0.9
2,210,368	-				+0.7
2,210,368	-				-1.0
2,210,368	-				-0.2
2,210,379	+				+0.6
2,210,379	+				-0.3
2,210,380	-				+0.6
2,210,388	+				+1.1
2,210,391	+				+0.8
2,210,392	-				-0.6
2,210,392	-				+0.8
2,210,465	+		DZA65_RS10430	0.11	+0.7
2,210,493	-		DZA65_RS10430	0.12	-0.5
2,210,733	+		DZA65_RS10430	0.26	+0.0
2,210,733	+		DZA65_RS10430	0.26	-1.2
2,210,734	-		DZA65_RS10430	0.26	+0.6
2,210,734	-		DZA65_RS10430	0.26	+0.2
2,210,734	-		DZA65_RS10430	0.26	+0.9
2,210,734	-		DZA65_RS10430	0.26	+0.3
2,210,915	+		DZA65_RS10430	0.36	+0.5
2,210,916	-		DZA65_RS10430	0.36	+0.3
2,210,964	-		DZA65_RS10430	0.39	-0.8
2,210,964	-		DZA65_RS10430	0.39	+0.3
2,211,053	+		DZA65_RS10430	0.44	-2.5
2,211,053	+		DZA65_RS10430	0.44	-0.1
2,211,053	+		DZA65_RS10430	0.44	-0.1
2,211,112	+		DZA65_RS10430	0.47	+0.9
2,211,112	+		DZA65_RS10430	0.47	+1.3
2,211,112	+		DZA65_RS10430	0.47	-0.3
2,211,112	+				-1.7
2,211,112	+		DZA65_RS10430	0.47	+0.2
2,211,113	-		DZA65_RS10430	0.47	-0.4
2,211,113	-		DZA65_RS10430	0.47	-0.9
2,211,182	+		DZA65_RS10430	0.51	-1.3
2,211,183	-		DZA65_RS10430	0.51	-1.7
2,211,183	-		DZA65_RS10430	0.51	+1.4