Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10340

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,186,178	-		DZA65_RS10335	0.44	+0.1
2,186,193	+		DZA65_RS10335	0.45	-2.9
2,186,214	+		DZA65_RS10335	0.47	-0.5
2,186,214	+		DZA65_RS10335	0.47	+0.3
2,186,214	+		DZA65_RS10335	0.47	-0.4
2,186,214	+		DZA65_RS10335	0.47	-1.9
2,186,214	+		DZA65_RS10335	0.47	-1.0
2,186,215	-		DZA65_RS10335	0.47	-0.8
2,186,215	-		DZA65_RS10335	0.47	+0.4
2,186,215	-		DZA65_RS10335	0.47	+0.7
2,186,215	-		DZA65_RS10335	0.47	+2.1
2,186,278	+		DZA65_RS10335	0.52	+0.9
2,186,278	+		DZA65_RS10335	0.52	+0.5
2,186,279	-		DZA65_RS10335	0.52	-0.5
2,186,370	+		DZA65_RS10335	0.60	+0.4
2,186,370	+		DZA65_RS10335	0.60	+0.9
2,186,370	+		DZA65_RS10335	0.60	-0.3
2,186,371	-		DZA65_RS10335	0.60	+0.4
2,186,371	-		DZA65_RS10335	0.60	-0.4
2,186,371	-		DZA65_RS10335	0.60	-0.4
2,186,371	-		DZA65_RS10335	0.60	+0.5
2,186,432	+		DZA65_RS10335	0.65	+0.2
2,186,433	-		DZA65_RS10335	0.65	-0.9
2,186,433	-		DZA65_RS10335	0.65	+0.4
2,186,783	+				-2.0
2,186,814	+				+1.0
2,186,814	+				-2.0
2,186,815	-				+1.1
2,186,819	-				-0.3
2,186,881	-				-0.4
2,186,891	+				+0.9
2,186,892	-				+0.5
2,186,892	-				-1.2
2,186,892	-				-0.5
2,186,932	+				-0.0
2,186,960	-				-0.2
2,186,975	+				+0.7
2,186,976	-				+0.5
2,187,012	+				+0.4
2,187,013	-				+0.1
2,187,032	+				+0.8
2,187,032	+				-0.9
2,187,033	-				-0.4
2,187,037	+				-0.1
2,187,046	+				+0.7
2,187,046	+				-0.1
2,187,046	+				+0.3
2,187,046	+				+0.5
2,187,047	-				+0.0
2,187,047	-				+0.3
2,187,054	+				+0.1
2,187,054	+				-0.1
2,187,054	+				+1.2
2,187,056	+				+0.1
2,187,056	+				-1.2
2,187,056	+				-0.1
2,187,057	-				+0.1
2,187,057	-				+0.3
2,187,057	-				-0.7
2,187,057	-				-0.1
2,187,057	-				-0.5
2,187,057	-				-0.6
2,187,059	+				+0.3
2,187,077	+				-0.8
2,187,078	-				-0.7
2,187,261	+		DZA65_RS10340	0.17	+0.3
2,187,261	+		DZA65_RS10340	0.17	+1.3
2,187,262	-		DZA65_RS10340	0.17	-0.0
2,187,262	-		DZA65_RS10340	0.17	+0.2
2,187,262	-		DZA65_RS10340	0.17	+0.3
2,187,478	-		DZA65_RS10340	0.54	-0.0
2,187,525	+		DZA65_RS10340	0.62	+0.7
2,187,525	+		DZA65_RS10340	0.62	+0.5
2,187,525	+				-1.3
2,187,525	+		DZA65_RS10340	0.62	-1.3
2,187,525	+		DZA65_RS10340	0.62	+0.7
2,187,525	+		DZA65_RS10340	0.62	-0.5
2,187,526	-		DZA65_RS10340	0.62	-0.3
2,187,526	-		DZA65_RS10340	0.62	+0.3
2,187,526	-		DZA65_RS10340	0.62	-0.3
2,187,526	-		DZA65_RS10340	0.62	-0.2
2,187,552	+		DZA65_RS10340	0.67	+0.1
2,187,552	+		DZA65_RS10340	0.67	-0.4
2,187,553	-		DZA65_RS10340	0.67	+1.6
2,187,553	-		DZA65_RS10340	0.67	-0.0
2,187,553	-		DZA65_RS10340	0.67	+0.2
2,187,572	+		DZA65_RS10340	0.70	-1.5
2,187,572	+		DZA65_RS10340	0.70	+0.8
2,187,572	+		DZA65_RS10340	0.70	+1.0
2,187,572	+		DZA65_RS10340	0.70	+0.6
2,187,572	+		DZA65_RS10340	0.70	+2.0
2,187,572	+		DZA65_RS10340	0.70	-0.6
2,187,572	+		DZA65_RS10340	0.70	-0.7
2,187,572	+		DZA65_RS10340	0.70	-0.6
2,187,572	+		DZA65_RS10340	0.70	+1.1
2,187,572	+		DZA65_RS10340	0.70	-0.6
2,187,572	+				+1.0
2,187,572	+		DZA65_RS10340	0.70	+1.5
2,187,573	-		DZA65_RS10340	0.70	+0.6
2,187,573	-		DZA65_RS10340	0.70	-1.4
2,187,573	-		DZA65_RS10340	0.70	-0.7
2,187,573	-		DZA65_RS10340	0.70	-1.5
2,187,573	-		DZA65_RS10340	0.70	-0.0
2,187,573	-		DZA65_RS10340	0.70	+0.4
2,187,573	-		DZA65_RS10340	0.70	-1.1
2,187,573	-		DZA65_RS10340	0.70	+0.3
2,187,573	-		DZA65_RS10340	0.70	+1.9
2,187,573	-		DZA65_RS10340	0.70	-0.6
2,187,573	-		DZA65_RS10340	0.70	+0.1
2,187,590	+		DZA65_RS10340	0.73	-0.2
2,187,590	+		DZA65_RS10340	0.73	+0.9
2,187,591	-		DZA65_RS10340	0.73	+1.1
2,187,591	-		DZA65_RS10340	0.73	+0.1
2,187,591	-		DZA65_RS10340	0.73	+0.5
2,187,591	-		DZA65_RS10340	0.73	-2.4
2,187,591	-		DZA65_RS10340	0.73	+0.3
2,187,594	+		DZA65_RS10340	0.74	-0.0
2,187,594	+		DZA65_RS10340	0.74	+0.6
2,187,594	+		DZA65_RS10340	0.74	+0.9
2,187,594	+		DZA65_RS10340	0.74	-2.3
2,187,594	+		DZA65_RS10340	0.74	+0.6
2,187,594	+		DZA65_RS10340	0.74	+0.9
2,187,594	+		DZA65_RS10340	0.74	+0.3
2,187,594	+		DZA65_RS10340	0.74	+1.2
2,187,594	+		DZA65_RS10340	0.74	-0.5
2,187,594	+		DZA65_RS10340	0.74	-0.3
2,187,594	+		DZA65_RS10340	0.74	-1.7
2,187,594	+		DZA65_RS10340	0.74	+1.5
2,187,595	-		DZA65_RS10340	0.74	+0.7
2,187,595	-		DZA65_RS10340	0.74	+0.4
2,187,595	-		DZA65_RS10340	0.74	-0.7
2,187,595	-		DZA65_RS10340	0.74	+0.7
2,187,595	-		DZA65_RS10340	0.74	+1.3
2,187,595	-		DZA65_RS10340	0.74	+0.6
2,187,595	-		DZA65_RS10340	0.74	-0.1
2,187,595	-		DZA65_RS10340	0.74	+1.4
2,187,595	-		DZA65_RS10340	0.74	-0.0
2,187,596	+		DZA65_RS10340	0.74	+2.5
2,187,596	+		DZA65_RS10340	0.74	-0.4
2,187,596	+		DZA65_RS10340	0.74	-0.8
2,187,597	-		DZA65_RS10340	0.74	+1.1
2,187,597	-		DZA65_RS10340	0.74	+0.4
2,187,597	-		DZA65_RS10340	0.74	+0.2
2,187,670	-		DZA65_RS10340	0.87	+0.1
2,187,722	+				-0.8
2,187,778	+				-1.1
2,187,778	+				+0.0
2,187,778	+				-1.2
2,187,850	+		DZA65_RS10345	0.12	+0.9
2,188,012	+		DZA65_RS10345	0.37	+0.3
2,188,012	+		DZA65_RS10345	0.37	+0.1
2,188,012	+		DZA65_RS10345	0.37	-0.1
2,188,012	+		DZA65_RS10345	0.37	+0.6
2,188,012	+		DZA65_RS10345	0.37	+0.7
2,188,012	+		DZA65_RS10345	0.37	+0.8
2,188,012	+		DZA65_RS10345	0.37	+0.1
2,188,013	-		DZA65_RS10345	0.37	-1.0
2,188,013	-		DZA65_RS10345	0.37	-0.4
2,188,144	+		DZA65_RS10345	0.58	-0.7
2,188,144	+		DZA65_RS10345	0.58	-1.0
2,188,145	-		DZA65_RS10345	0.58	-1.3
2,188,145	-		DZA65_RS10345	0.58	-0.3
2,188,145	-				+3.1
2,188,452	-				-0.1
2,188,465	+				+0.0
2,188,509	+				-0.4
2,188,509	+				+0.7
2,188,509	+				-0.2
2,188,509	+				-2.1
2,188,510	-				-0.3
2,188,510	-				+0.8
2,188,510	-				-0.2
2,188,510	-				+1.0
2,188,517	+				-0.4
2,188,518	-				-1.1
2,188,660	+		DZA65_RS10350	0.22	-0.4
2,188,661	-		DZA65_RS10350	0.22	+0.7
2,188,661	-		DZA65_RS10350	0.22	-0.2
2,188,725	+		DZA65_RS10350	0.29	+0.8
2,188,725	+		DZA65_RS10350	0.29	-0.4
2,188,725	+		DZA65_RS10350	0.29	+0.8
2,188,725	+		DZA65_RS10350	0.29	+0.3
2,188,725	+		DZA65_RS10350	0.29	+1.5
2,188,725	+		DZA65_RS10350	0.29	+0.9
2,188,725	+		DZA65_RS10350	0.29	-0.6
2,188,725	+		DZA65_RS10350	0.29	+0.3
2,188,726	-		DZA65_RS10350	0.29	-0.1
2,188,726	-		DZA65_RS10350	0.29	-0.2
2,188,726	-		DZA65_RS10350	0.29	-0.0
2,188,726	-		DZA65_RS10350	0.29	+0.8
2,188,726	-		DZA65_RS10350	0.29	+0.5
2,188,726	-		DZA65_RS10350	0.29	-1.2